Wall clock time and date at job start Tue Mar 31 2020 11:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00060 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00309 * 3 2 1 6 6 H 1.48500 * 109.46913 * 150.00450 * 3 2 1 7 7 C 1.38792 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99830 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00427 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00259 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00122 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99718 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99731 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46980 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46880 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.47125 * 180.02562 * 16 15 14 18 18 C 1.46896 * 111.00044 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47020 * 180.02562 * 18 17 16 20 20 C 1.33635 * 122.75319 * 94.72961 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 0.97003 * 120.00520 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47045 * 59.99855 * 10 9 7 26 26 H 1.08999 * 109.47040 * 300.00229 * 10 9 7 27 27 H 0.96998 * 120.00113 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.46940 * 60.00719 * 14 13 11 29 29 H 1.08999 * 109.47576 * 300.00430 * 14 13 11 30 30 H 1.08991 * 109.47120 * 60.00609 * 15 14 13 31 31 H 1.08999 * 109.47146 * 300.00484 * 15 14 13 32 32 H 1.09004 * 109.47331 * 60.00331 * 16 15 14 33 33 H 1.08999 * 109.47285 * 299.99981 * 16 15 14 34 34 H 1.00897 * 110.99470 * 303.95499 * 17 16 15 35 35 H 1.09000 * 109.47401 * 59.99871 * 18 17 16 36 36 H 1.09002 * 109.46966 * 299.99612 * 18 17 16 37 37 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 38 38 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9844 -0.0009 11 6 5.5731 -3.2323 -0.0008 12 8 6.3441 -2.2961 -0.0014 13 7 6.0458 -4.4945 -0.0001 14 6 7.4908 -4.7355 -0.0006 15 6 7.7565 -6.2424 -0.0002 16 6 9.2656 -6.4940 0.0000 17 7 9.5208 -7.9408 -0.0003 18 6 10.9628 -8.2210 0.0005 19 6 11.1848 -9.7116 -0.0005 20 6 11.3838 -10.4122 -1.1209 21 16 11.5984 -12.1026 -0.6726 22 6 11.3911 -11.7004 0.9762 23 7 11.1923 -10.4319 1.1031 24 1 -0.4851 0.8400 0.0004 25 1 3.6434 -3.4316 -0.8906 26 1 3.6440 -3.4312 0.8893 27 1 5.4292 -5.2433 0.0000 28 1 7.9340 -4.2879 0.8890 29 1 7.9334 -4.2891 -0.8910 30 1 7.3134 -6.6896 -0.8899 31 1 7.3138 -6.6892 0.8900 32 1 9.7085 -6.0468 0.8899 33 1 9.7086 -6.0472 -0.8901 34 1 9.0653 -8.3883 0.7809 35 1 11.4170 -7.7861 0.8908 36 1 11.4180 -7.7857 -0.8892 37 1 11.4095 -10.0126 -2.1239 38 1 11.4222 -12.4060 1.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154819202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:21 Heat of formation + Delta-G solvation = -25.265037 kcal Electronic energy + Delta-G solvation = -19580.632177 eV Core-core repulsion = 16288.751746 eV Total energy + Delta-G solvation = -3291.880431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82050 -40.63807 -37.79067 -35.96220 -34.67176 -33.17586 -31.54046 -30.26578 -27.88990 -27.43120 -25.71645 -24.28627 -22.59393 -21.71423 -20.52407 -19.86749 -18.94517 -17.83868 -17.44074 -17.28208 -17.04489 -16.83878 -16.27870 -16.04867 -15.72150 -15.40317 -14.95623 -14.93397 -14.80743 -14.49925 -14.11953 -13.88672 -13.37263 -13.34942 -13.14406 -13.01205 -12.91570 -12.60130 -12.44511 -12.20284 -11.85987 -11.83921 -11.16967 -11.01810 -10.63850 -10.53718 -10.39379 -10.13422 -9.87399 -9.43971 -8.99676 -8.51402 -6.22426 -0.19247 0.51109 0.81365 0.99346 1.31714 1.47129 1.56196 1.56583 1.75123 2.22823 2.27161 2.71926 2.86847 3.17305 3.42886 3.84688 3.95532 4.07898 4.14786 4.19814 4.23856 4.26414 4.46442 4.47677 4.54038 4.60103 4.68027 4.77054 4.82360 5.15175 5.16224 5.19463 5.43496 5.70766 5.92586 6.11431 6.28997 6.47820 6.77644 6.93782 7.19764 8.60938 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.052634 B = 0.001529 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.847173 B =18311.335351 C =18588.694063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.712 5.712 14 C 0.123 3.877 15 C -0.113 4.113 16 C 0.065 3.935 17 N -0.686 5.686 18 C 0.136 3.864 19 C 0.043 3.957 20 C -0.242 4.242 21 S 0.154 5.846 22 C 0.013 3.987 23 N -0.502 5.502 24 H 0.277 0.723 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.417 0.583 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.344 0.656 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.193 0.807 38 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.030 -27.524 -1.048 37.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.263 4.263 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.366 5.366 14 C -0.001 4.001 15 C -0.151 4.151 16 C -0.064 4.064 17 N -0.317 5.317 18 C 0.004 3.996 19 C -0.089 4.089 20 C -0.383 4.383 21 S 0.406 5.594 22 C -0.285 4.285 23 N -0.217 5.217 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.210 0.790 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 27.206 -26.698 -1.709 38.156 hybrid contribution -1.409 0.458 0.991 1.783 sum 25.797 -26.240 -0.717 36.804 Atomic orbital electron populations 1.70015 1.07296 1.29027 1.49118 1.25561 0.95271 1.02251 0.92852 0.85864 0.80659 0.79588 0.80231 1.18667 1.18292 1.16123 1.22470 0.90261 0.96733 1.58319 0.91938 1.84707 1.06432 1.06324 1.97595 1.23278 0.95923 0.99543 1.07520 1.19968 0.89403 0.83435 0.75307 1.90686 1.59363 1.43911 1.50376 1.45739 1.08915 1.06765 1.75174 1.21321 0.79842 0.97068 1.01905 1.21591 0.96559 0.92824 1.04174 1.21816 0.95373 0.87647 1.01597 1.60510 1.09949 1.10815 1.50444 1.20400 0.89307 0.87610 1.02252 1.20320 1.03302 0.98117 0.87113 1.27171 1.10215 0.96266 1.04605 1.84001 1.64578 1.07394 1.03412 1.28861 1.02690 0.95236 1.01666 1.66153 1.16997 1.06126 1.32449 0.91362 0.86769 0.86790 0.74573 0.92329 0.91992 0.89724 0.90421 0.94544 0.89980 0.83869 0.93939 0.88126 0.78996 0.76011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.18 27.74 68.60 1.90 47.08 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 7 C -0.53 -31.02 10.04 67.95 0.68 -30.33 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 10 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 11 C 0.53 18.26 7.85 87.66 0.69 18.95 16 12 O -0.56 -24.24 15.86 -3.02 -0.05 -24.28 16 13 N -0.71 -16.34 5.56 -463.05 -2.57 -18.91 16 14 C 0.12 2.39 5.67 86.38 0.49 2.88 16 15 C -0.11 -1.45 5.59 30.60 0.17 -1.28 16 16 C 0.07 0.81 5.69 86.30 0.49 1.30 16 17 N -0.69 -9.07 6.49 -517.92 -3.36 -12.43 16 18 C 0.14 1.75 6.12 85.56 0.52 2.27 16 19 C 0.04 0.62 6.25 41.52 0.26 0.88 16 20 C -0.24 -2.67 11.11 66.77 0.74 -1.93 16 21 S 0.15 1.25 23.22 -56.49 -1.31 -0.07 16 22 C 0.01 0.13 12.23 130.65 1.60 1.73 16 23 N -0.50 -7.99 10.53 -191.54 -2.02 -10.01 16 24 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 26 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 27 H 0.42 6.85 8.47 -92.71 -0.79 6.07 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.34 4.82 8.72 -89.70 -0.78 4.04 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.22 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -76.32 356.11 -2.12 -78.44 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.52 Total: 11.98 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 6.55 Total: -6.11 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -7.65 Total: -96.99 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -2.36 Total: -10.11 kcal Total: -76.32 -2.12 -78.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154819202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.175 kcal (2) G-P(sol) polarization free energy of solvation -76.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds