Wall clock time and date at job start Tue Mar 31 2020 10:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47086 * 42.50899 * 3 2 1 5 5 C 1.34950 * 126.04008 * 125.25869 * 4 3 2 6 6 C 1.35309 * 107.74966 * 180.14483 * 5 4 3 7 7 C 1.50699 * 126.04390 * 179.87239 * 6 5 4 8 8 N 1.46502 * 109.47128 * 269.72101 * 7 6 5 9 9 C 1.34775 * 119.99552 * 179.97438 * 8 7 6 10 10 O 1.21761 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.46244 * 119.99665 * 179.97438 * 9 8 7 12 12 S 1.75662 * 125.22687 * 0.08480 * 11 9 8 13 13 C 1.75475 * 92.08977 * 180.21629 * 12 11 9 14 14 C 1.32762 * 111.36200 * 359.83520 * 13 12 11 15 15 C 1.39544 * 125.22461 * 180.02562 * 11 9 8 16 16 C 1.40530 * 123.72036 * 359.97438 * 15 11 9 17 17 H 1.08002 * 120.00122 * 335.52835 * 16 15 11 18 18 C 1.40309 * 120.00320 * 155.51826 * 16 15 11 19 19 N 1.30640 * 119.99778 * 339.34545 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 159.34138 * 18 16 15 21 21 H 1.48501 * 109.46895 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47086 * 300.00081 * 20 18 16 23 23 H 1.48491 * 109.47072 * 60.00435 * 20 18 16 24 24 C 1.39874 * 107.91814 * 359.61078 * 6 5 4 25 25 N 1.30838 * 108.20574 * 0.24317 * 24 6 5 26 26 H 4.40636 * 5.51322 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47109 * 282.50908 * 3 2 1 28 28 H 1.08999 * 109.46873 * 162.51062 * 3 2 1 29 29 H 1.08006 * 126.12156 * 0.02562 * 5 4 3 30 30 H 1.08996 * 109.47309 * 149.71436 * 7 6 5 31 31 H 1.09005 * 109.46596 * 29.71565 * 7 6 5 32 32 H 0.96997 * 120.00180 * 359.97438 * 8 7 6 33 33 H 1.08005 * 124.31556 * 179.86582 * 13 12 11 34 34 H 1.07997 * 122.78269 * 180.02562 * 14 13 12 35 35 H 0.96999 * 120.00259 * 353.99991 * 19 18 16 36 36 H 1.08004 * 125.89981 * 180.21771 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0173 -0.9333 5 6 3.9932 -0.8119 -1.9541 6 6 4.1884 -1.9986 -2.5741 7 6 5.0718 -2.2390 -3.7711 8 7 4.2912 -2.0602 -4.9979 9 6 4.8780 -2.2253 -6.1999 10 8 6.0569 -2.5225 -6.2663 11 6 4.0987 -2.0473 -7.4246 12 16 2.3965 -1.6183 -7.4890 13 6 2.3888 -1.6504 -9.2434 14 6 3.5862 -1.9588 -9.7267 15 6 4.5933 -2.1912 -8.7214 16 6 5.9251 -2.5303 -9.0153 17 1 6.7069 -2.3164 -8.3015 18 6 6.2391 -3.1468 -10.2359 19 7 5.3093 -3.7659 -10.9132 20 14 7.9868 -3.0824 -10.8923 21 1 8.0554 -3.8031 -12.1889 22 1 8.3889 -1.6669 -11.0915 23 1 8.9052 -3.7256 -9.9188 24 6 3.4299 -2.9641 -1.9040 25 7 2.7979 -2.3770 -0.9203 26 1 -1.0498 -0.0001 -0.0003 27 1 3.0094 -0.2218 1.0033 28 1 3.0089 0.9810 -0.3088 29 1 4.4424 0.1313 -2.2282 30 1 5.4642 -3.2552 -3.7349 31 1 5.8992 -1.5294 -3.7603 32 1 3.3522 -1.8230 -4.9450 33 1 1.5207 -1.4449 -9.8524 34 1 3.7891 -2.0295 -10.7851 35 1 4.4235 -3.8749 -10.5332 36 1 3.3751 -4.0130 -2.1555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156661727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:01 Heat of formation + Delta-G solvation = 116.173636 kcal Electronic energy + Delta-G solvation = -21972.584725 eV Core-core repulsion = 18551.393583 eV Total energy + Delta-G solvation = -3421.191142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33244 -38.24605 -36.42916 -35.26540 -33.78430 -32.99418 -31.95750 -30.51581 -28.99527 -27.79288 -26.06726 -24.45528 -22.38669 -21.50396 -20.49788 -20.00130 -19.02269 -18.66967 -17.82454 -16.86915 -16.31586 -15.71857 -14.92201 -14.76375 -14.55354 -14.25531 -14.08725 -13.87574 -13.75695 -13.39089 -13.11459 -12.88033 -12.47840 -12.08624 -11.99734 -11.75028 -11.37034 -11.06613 -11.00216 -10.76593 -10.67444 -10.52975 -10.42281 -10.06216 -9.72430 -9.57574 -9.14279 -8.80675 -8.29217 -8.18764 -7.74300 -7.32803 -7.28772 -4.55848 1.67128 1.89466 2.05794 2.41624 2.67302 2.93287 2.96775 3.07928 3.12760 3.34164 3.57857 3.70599 3.84975 3.93570 4.37574 4.45488 4.47646 4.70322 4.85780 4.97624 5.13170 5.30479 5.44275 5.52450 5.72746 5.84870 6.06048 6.28595 6.44915 6.55300 6.81278 6.82258 7.00180 7.18209 7.22854 7.30781 7.39776 7.58218 7.80397 7.97090 8.45871 8.55316 8.79438 9.61089 9.79890 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.003009 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.140702 B = 9303.054049 C =10266.160516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.216 4.216 3 C 0.252 3.748 4 N -0.379 5.379 5 C 0.073 3.927 6 C -0.244 4.244 7 C 0.207 3.793 8 N -0.748 5.748 9 C 0.599 3.401 10 O -0.565 6.565 11 C -0.436 4.436 12 S -0.037 6.037 13 C -0.188 4.188 14 C -0.143 4.143 15 C 0.112 3.888 16 C -0.426 4.426 17 H 0.110 0.890 18 C 0.029 3.971 19 N -0.779 5.779 20 Si 1.074 2.926 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.066 3.934 25 N -0.293 5.293 26 H 0.222 0.778 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.177 0.823 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.389 0.611 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.300 0.700 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 6.600 14.195 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.216 4.216 3 C 0.132 3.868 4 N -0.161 5.161 5 C -0.073 4.073 6 C -0.255 4.255 7 C 0.082 3.918 8 N -0.401 5.401 9 C 0.396 3.604 10 O -0.449 6.449 11 C -0.555 4.555 12 S 0.219 5.781 13 C -0.322 4.322 14 C -0.176 4.176 15 C 0.102 3.898 16 C -0.456 4.456 17 H 0.128 0.872 18 C -0.195 4.195 19 N -0.402 5.402 20 Si 0.896 3.104 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.121 4.121 25 N -0.113 5.113 26 H 0.238 0.762 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.194 0.806 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.222 0.778 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.048 6.186 15.008 17.000 hybrid contribution -0.432 0.426 -0.432 0.745 sum -5.480 6.612 14.576 16.918 Atomic orbital electron populations 1.25015 0.95971 0.98192 0.98298 1.22769 0.94270 1.02257 1.02339 1.18354 0.84811 0.89952 0.93711 1.48511 1.35799 1.06879 1.24922 1.22447 0.94660 1.00359 0.89787 1.20262 1.08906 0.92868 1.03508 1.19204 0.91482 1.01355 0.79794 1.45952 1.13408 1.75862 1.04889 1.16792 0.86086 0.76115 0.81388 1.90657 1.16216 1.51351 1.86638 1.22468 0.94149 1.43616 0.95234 1.82800 1.12306 1.79610 1.03356 1.24945 1.00784 1.09024 0.97478 1.21593 0.93116 1.02737 1.00155 1.17893 0.92558 0.90706 0.88673 1.20963 0.94159 1.28078 1.02419 0.87245 1.27545 1.07119 0.91677 0.93171 1.70436 1.05867 1.24899 1.39017 0.83504 0.71822 0.78179 0.76924 1.19711 1.19650 1.19397 1.23924 0.94802 1.00500 0.92918 1.77400 1.23397 0.87618 1.22847 0.76153 0.87574 0.86318 0.80574 0.91548 0.91879 0.77797 0.84207 0.85175 0.88535 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.22 -2.13 13.52 -37.12 -0.50 -2.63 16 3 C 0.25 2.02 6.99 -6.83 -0.05 1.97 16 4 N -0.38 -4.39 3.65 -64.24 -0.23 -4.62 16 5 C 0.07 0.85 11.36 -17.22 -0.20 0.65 16 6 C -0.24 -3.31 5.47 -105.05 -0.57 -3.89 16 7 C 0.21 3.35 6.15 -5.19 -0.03 3.32 16 8 N -0.75 -14.59 5.54 -62.93 -0.35 -14.94 16 9 C 0.60 14.72 7.76 -13.05 -0.10 14.62 16 10 O -0.57 -15.49 14.46 5.13 0.07 -15.42 16 11 C -0.44 -11.03 6.51 -35.88 -0.23 -11.26 16 12 S -0.04 -0.78 22.25 -107.50 -2.39 -3.17 16 13 C -0.19 -3.98 11.07 28.86 0.32 -3.66 16 14 C -0.14 -3.38 8.19 -39.12 -0.32 -3.71 16 15 C 0.11 2.97 5.41 -106.21 -0.57 2.40 16 16 C -0.43 -11.52 8.44 -37.94 -0.32 -11.84 16 17 H 0.11 3.12 6.14 -52.49 -0.32 2.80 16 18 C 0.03 0.71 5.23 -17.28 -0.09 0.62 16 19 N -0.78 -19.73 12.48 55.57 0.69 -19.04 16 20 Si 1.07 21.33 29.99 -169.99 -5.10 16.24 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 C 0.07 0.89 11.96 -17.36 -0.21 0.68 16 25 N -0.29 -4.09 12.39 30.63 0.38 -3.71 16 26 H 0.22 1.21 7.80 -54.10 -0.42 0.79 16 27 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.12 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.18 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.39 7.22 7.54 -40.82 -0.31 6.92 16 33 H 0.14 2.48 8.06 -52.48 -0.42 2.05 16 34 H 0.13 3.03 6.77 -52.49 -0.36 2.68 16 35 H 0.30 7.73 6.22 -40.82 -0.25 7.48 16 36 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.81 340.54 -7.52 -40.33 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -3.41 Total: 12.75 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.31 Total: -13.55 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.49 Total: -42.31 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.07 Total: -15.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.10 Total: 16.24 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.39 Total: -3.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.81 -7.52 -40.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156661727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.506 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds