Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47402 * 270.00313 * 3 2 1 5 5 H 1.48497 * 109.47349 * 30.00304 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00539 * 3 2 1 7 7 C 1.37881 * 120.00327 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84346 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53721 * 231.32413 * 8 7 2 10 10 C 1.52964 * 109.40243 * 305.37834 * 9 8 7 11 11 H 1.09004 * 109.41042 * 303.55727 * 10 9 8 12 12 N 1.46906 * 109.41217 * 183.70287 * 10 9 8 13 13 C 1.46898 * 110.99888 * 154.99821 * 12 10 9 14 14 H 1.08994 * 109.47384 * 45.00188 * 13 12 10 15 15 F 1.39902 * 109.46991 * 284.99641 * 13 12 10 16 16 O 1.42905 * 109.46886 * 164.99780 * 13 12 10 17 17 C 1.35719 * 116.99514 * 59.99834 * 16 13 12 18 18 C 1.39292 * 120.11616 * 179.72168 * 17 16 13 19 19 C 1.38603 * 117.92376 * 179.73926 * 18 17 16 20 20 C 1.38904 * 118.00900 * 0.52992 * 19 18 17 21 21 Cl 1.73602 * 120.02932 * 179.70709 * 20 19 18 22 22 N 1.31895 * 119.94283 * 359.72503 * 20 19 18 23 23 N 1.28351 * 122.24278 * 0.02562 * 22 20 19 24 24 C 1.52957 * 109.81810 * 63.59623 * 10 9 8 25 25 C 1.51264 * 120.85518 * 179.97438 * 7 2 1 26 26 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.62657 * 111.61483 * 8 7 2 28 28 H 1.08997 * 109.62736 * 351.04238 * 8 7 2 29 29 H 1.08991 * 109.48570 * 185.39741 * 9 8 7 30 30 H 1.09001 * 109.47833 * 65.35023 * 9 8 7 31 31 H 1.00902 * 110.99923 * 278.95762 * 12 10 9 32 32 H 1.08001 * 121.03900 * 359.97438 * 18 17 16 33 33 H 1.08003 * 120.99217 * 180.25330 * 19 18 17 34 34 H 1.09002 * 109.48449 * 56.37980 * 24 10 9 35 35 H 1.08997 * 109.48084 * 176.42181 * 24 10 9 36 36 H 1.08993 * 109.62609 * 248.39030 * 25 7 2 37 37 H 1.09004 * 109.62294 * 8.76677 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8237 -3.3831 1.1332 10 6 3.3406 -3.5074 0.9809 11 1 3.5739 -3.9111 -0.0043 12 7 3.8627 -4.4109 2.0150 13 6 5.1283 -5.0230 1.5889 14 1 5.7721 -4.2598 1.1519 15 9 4.8692 -6.0154 0.6374 16 8 5.7799 -5.6056 2.7195 17 6 5.1082 -6.5806 3.3829 18 6 5.6851 -7.1971 4.4908 19 6 4.9567 -8.1832 5.1374 20 6 3.7022 -8.5033 4.6344 21 17 2.7481 -9.7358 5.3989 22 7 3.2365 -7.8703 3.5750 23 7 3.9057 -6.9532 2.9763 24 6 3.9914 -2.1315 1.1322 25 6 3.5171 -1.2165 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 1.4192 -3.0189 -0.9552 28 1 0.2037 -2.3409 0.1598 29 1 1.3714 -4.3737 1.0880 30 1 1.5913 -2.9205 2.0925 31 1 3.9722 -3.9288 2.8946 32 1 6.6677 -6.9129 4.8374 33 1 5.3546 -8.6906 6.0038 34 1 3.7078 -1.6986 2.0915 35 1 5.0755 -2.2351 1.0862 36 1 3.8771 -1.5998 -0.9558 37 1 3.8982 -0.2074 0.1554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = -33.370242 kcal Electronic energy + Delta-G solvation = -24072.269160 eV Core-core repulsion = 20211.780378 eV Total energy + Delta-G solvation = -3860.488782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.66737 -41.43862 -38.83321 -37.45883 -37.02098 -33.93275 -33.50118 -31.74411 -31.18352 -29.68044 -27.23073 -25.52286 -24.83167 -23.35498 -21.67665 -21.35407 -19.81805 -18.93859 -18.33070 -17.51064 -16.89166 -16.40425 -16.15958 -15.48438 -15.34754 -14.50959 -14.44322 -14.11024 -13.89562 -13.69206 -13.08061 -13.01543 -12.81751 -12.53518 -12.21697 -12.17698 -12.04391 -11.85496 -11.67870 -11.35317 -11.03106 -10.82467 -10.66633 -10.58424 -10.26464 -9.87323 -9.82129 -9.60988 -9.39920 -8.90430 -8.89167 -8.49753 -8.13215 -6.10173 -4.01737 0.38320 0.52204 1.34953 2.40825 3.15448 3.24445 3.31711 3.33379 3.69254 3.93535 4.10465 4.32708 4.35851 4.38455 4.52178 4.87832 5.12345 5.16957 5.29107 5.48027 5.54933 5.75716 6.03002 6.28179 6.41774 6.60461 6.64376 6.74440 6.86467 6.99390 7.17245 7.30030 7.33607 7.49088 7.64990 7.81666 7.87838 8.32642 8.39408 8.97453 9.53319 10.99206 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.003103 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.568206 B = 9020.509358 C = 9622.063796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.488 4.488 8 C 0.009 3.991 9 C -0.089 4.089 10 C 0.104 3.896 11 H 0.073 0.927 12 N -0.709 5.709 13 C 0.422 3.578 14 H 0.126 0.874 15 F -0.188 7.188 16 O -0.310 6.310 17 C 0.262 3.738 18 C -0.120 4.120 19 C -0.080 4.080 20 C 0.078 3.922 21 Cl -0.010 7.010 22 N -0.188 5.188 23 N -0.217 5.217 24 C -0.136 4.136 25 C -0.016 4.016 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.356 0.644 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.017 0.983 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 -14.804 11.446 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.507 4.507 8 C -0.029 4.029 9 C -0.128 4.128 10 C -0.003 4.003 11 H 0.092 0.908 12 N -0.350 5.350 13 C 0.261 3.739 14 H 0.143 0.857 15 F -0.170 7.170 16 O -0.215 6.215 17 C 0.077 3.923 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.094 4.094 21 Cl 0.018 6.982 22 N -0.034 5.034 23 N -0.073 5.073 24 C -0.176 4.176 25 C -0.054 4.054 26 H 0.074 0.926 27 H 0.022 0.978 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.611 -15.012 10.224 21.557 hybrid contribution 1.964 1.374 1.099 2.637 sum 13.575 -13.638 11.323 22.327 Atomic orbital electron populations 1.69838 1.06119 1.26870 1.49742 1.24855 0.94710 0.98481 0.94654 0.86702 0.79875 0.83507 0.78456 1.20441 1.21652 1.19143 1.20045 0.89158 0.91691 1.49837 1.19400 0.98724 0.92674 0.92073 1.21551 0.91438 0.98717 1.01092 1.21569 0.97483 0.88871 0.92364 0.90846 1.60663 1.26375 1.39798 1.08214 1.23228 0.90190 0.84578 0.75942 0.85731 1.92975 1.95212 1.64253 1.64521 1.86650 1.43965 1.48320 1.42607 1.21488 0.90850 0.89248 0.90689 1.21597 1.02622 0.96358 0.94369 1.22045 0.92382 0.96128 1.00321 1.23443 0.92703 0.96606 0.96670 1.98418 1.72048 1.49696 1.78067 1.72931 1.25730 1.00767 1.04014 1.73737 1.03666 1.07444 1.22422 1.22280 0.96045 0.97260 1.01978 1.19738 0.97037 0.95336 0.93331 0.92585 0.97760 0.92264 0.93860 0.93370 0.82166 0.81777 0.81764 0.92480 0.95501 0.96504 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.73 55.43 0.71 -24.82 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.74 27.53 -169.99 -4.68 16.06 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.96 6.11 56.52 0.35 -5.61 16 7 C -0.49 -12.65 5.51 -98.92 -0.55 -13.20 16 8 C 0.01 0.23 5.97 -27.49 -0.16 0.07 16 9 C -0.09 -1.93 5.54 -26.63 -0.15 -2.08 16 10 C 0.10 1.94 2.30 -67.75 -0.16 1.79 16 11 H 0.07 1.43 7.68 -51.93 -0.40 1.03 16 12 N -0.71 -11.36 5.15 -111.11 -0.57 -11.93 16 13 C 0.42 5.98 4.29 60.06 0.26 6.24 16 14 H 0.13 1.50 7.12 -51.93 -0.37 1.13 16 15 F -0.19 -3.13 16.29 2.25 0.04 -3.10 16 16 O -0.31 -3.93 10.31 -18.86 -0.19 -4.12 16 17 C 0.26 3.35 7.20 -16.96 -0.12 3.23 16 18 C -0.12 -1.04 10.16 -39.05 -0.40 -1.44 16 19 C -0.08 -0.64 9.99 -39.20 -0.39 -1.03 16 20 C 0.08 0.88 7.37 -17.28 -0.13 0.75 16 21 Cl -0.01 -0.10 29.13 -51.86 -1.51 -1.61 16 22 N -0.19 -2.80 11.48 32.89 0.38 -2.43 16 23 N -0.22 -3.40 9.08 30.50 0.28 -3.12 16 24 C -0.14 -2.55 5.18 -26.66 -0.14 -2.69 16 25 C -0.02 -0.36 5.59 -27.51 -0.15 -0.52 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.36 5.31 8.48 -39.29 -0.33 4.97 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.42 7.27 -51.93 -0.38 0.05 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.78 4.59 -51.93 -0.24 0.54 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -30.16 323.93 -7.10 -37.26 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.24 Total: -0.13 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.18 Total: -6.94 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.79 Total: -42.30 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.68 Total: 16.06 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.16 -7.10 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.886 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds