Wall clock time and date at job start Tue Mar 31 2020 11:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47402 * 270.00313 * 3 2 1 5 5 H 1.48497 * 109.47349 * 30.00304 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00539 * 3 2 1 7 7 C 1.37881 * 120.00327 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84346 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53721 * 231.32413 * 8 7 2 10 10 C 1.52964 * 109.40243 * 305.37834 * 9 8 7 11 11 H 1.09004 * 109.41042 * 303.55727 * 10 9 8 12 12 N 1.46906 * 109.41217 * 183.70287 * 10 9 8 13 13 C 1.46898 * 110.99888 * 154.99821 * 12 10 9 14 14 H 1.08994 * 109.47384 * 45.00188 * 13 12 10 15 15 F 1.39902 * 109.46991 * 284.99641 * 13 12 10 16 16 O 1.42905 * 109.46886 * 164.99780 * 13 12 10 17 17 C 1.35719 * 116.99514 * 59.99834 * 16 13 12 18 18 C 1.39292 * 120.11616 * 179.72168 * 17 16 13 19 19 C 1.38603 * 117.92376 * 179.73926 * 18 17 16 20 20 C 1.38904 * 118.00900 * 0.52992 * 19 18 17 21 21 Cl 1.73602 * 120.02932 * 179.70709 * 20 19 18 22 22 N 1.31895 * 119.94283 * 359.72503 * 20 19 18 23 23 N 1.28351 * 122.24278 * 0.02562 * 22 20 19 24 24 C 1.52957 * 109.81810 * 63.59623 * 10 9 8 25 25 C 1.51264 * 120.85518 * 179.97438 * 7 2 1 26 26 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.62657 * 111.61483 * 8 7 2 28 28 H 1.08997 * 109.62736 * 351.04238 * 8 7 2 29 29 H 1.08991 * 109.48570 * 185.39741 * 9 8 7 30 30 H 1.09001 * 109.47833 * 65.35023 * 9 8 7 31 31 H 1.00902 * 110.99923 * 278.95762 * 12 10 9 32 32 H 1.08001 * 121.03900 * 359.97438 * 18 17 16 33 33 H 1.08003 * 120.99217 * 180.25330 * 19 18 17 34 34 H 1.09002 * 109.48449 * 56.37980 * 24 10 9 35 35 H 1.08997 * 109.48084 * 176.42181 * 24 10 9 36 36 H 1.08993 * 109.62609 * 248.39030 * 25 7 2 37 37 H 1.09004 * 109.62294 * 8.76677 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8237 -3.3831 1.1332 10 6 3.3406 -3.5074 0.9809 11 1 3.5739 -3.9111 -0.0043 12 7 3.8627 -4.4109 2.0150 13 6 5.1283 -5.0230 1.5889 14 1 5.7721 -4.2598 1.1519 15 9 4.8692 -6.0154 0.6374 16 8 5.7799 -5.6056 2.7195 17 6 5.1082 -6.5806 3.3829 18 6 5.6851 -7.1971 4.4908 19 6 4.9567 -8.1832 5.1374 20 6 3.7022 -8.5033 4.6344 21 17 2.7481 -9.7358 5.3989 22 7 3.2365 -7.8703 3.5750 23 7 3.9057 -6.9532 2.9763 24 6 3.9914 -2.1315 1.1322 25 6 3.5171 -1.2165 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 1.4192 -3.0189 -0.9552 28 1 0.2037 -2.3409 0.1598 29 1 1.3714 -4.3737 1.0880 30 1 1.5913 -2.9205 2.0925 31 1 3.9722 -3.9288 2.8946 32 1 6.6677 -6.9129 4.8374 33 1 5.3546 -8.6906 6.0038 34 1 3.7078 -1.6986 2.0915 35 1 5.0755 -2.2351 1.0862 36 1 3.8771 -1.5998 -0.9558 37 1 3.8982 -0.2074 0.1554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:23 Heat of formation + Delta-G solvation = -56.159644 kcal Electronic energy + Delta-G solvation = -24073.257382 eV Core-core repulsion = 20211.780378 eV Total energy + Delta-G solvation = -3861.477005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.84252 -42.30571 -39.87567 -38.95981 -37.82904 -35.53658 -34.35642 -33.19015 -32.41913 -31.47543 -28.85758 -26.61533 -25.68373 -24.48333 -23.36149 -23.11587 -21.31923 -20.13796 -19.23395 -18.31424 -18.17242 -17.81502 -17.35396 -16.65940 -16.43094 -16.35773 -15.60531 -15.15440 -14.87629 -14.74167 -14.59156 -14.50069 -14.16714 -14.07520 -13.98095 -13.70593 -13.04471 -12.86098 -12.78140 -12.76945 -12.59363 -12.48238 -12.38534 -11.93431 -11.71002 -11.35966 -11.34699 -10.82506 -10.71691 -10.62580 -10.54722 -10.30553 -9.52072 -8.14780 -6.10308 -0.35069 -0.29434 0.54509 1.40464 1.41346 1.48697 1.50462 2.29610 2.41613 2.63497 2.96731 3.12886 3.30357 3.42176 3.68786 3.78155 3.98812 4.02458 4.18641 4.24178 4.48704 4.62230 4.71827 4.82851 4.95957 5.00832 5.04350 5.06524 5.24427 5.33359 5.46927 5.58702 5.62794 5.75284 5.81409 5.88046 6.28842 6.39139 6.97248 7.44711 7.47653 8.96503 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.003103 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.568206 B = 9020.509358 C = 9622.063796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.498 4.498 8 C 0.007 3.993 9 C -0.078 4.078 10 C 0.121 3.879 11 H 0.067 0.933 12 N -0.715 5.715 13 C 0.422 3.578 14 H 0.157 0.843 15 F -0.207 7.207 16 O -0.300 6.300 17 C 0.239 3.761 18 C -0.101 4.101 19 C -0.064 4.064 20 C 0.074 3.926 21 Cl -0.001 7.001 22 N -0.238 5.238 23 N -0.264 5.264 24 C -0.128 4.128 25 C -0.020 4.020 26 H 0.261 0.739 27 H -0.004 1.004 28 H 0.021 0.979 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.364 0.636 32 H 0.207 0.793 33 H 0.211 0.789 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.981 -15.244 13.352 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.166 1.166 7 C -0.517 4.517 8 C -0.031 4.031 9 C -0.117 4.117 10 C 0.012 3.988 11 H 0.085 0.915 12 N -0.357 5.357 13 C 0.260 3.740 14 H 0.173 0.827 15 F -0.188 7.188 16 O -0.205 6.205 17 C 0.054 3.946 18 C -0.130 4.130 19 C -0.092 4.092 20 C -0.100 4.100 21 Cl 0.027 6.973 22 N -0.083 5.083 23 N -0.118 5.118 24 C -0.167 4.167 25 C -0.058 4.058 26 H 0.071 0.929 27 H 0.014 0.986 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.187 0.813 32 H 0.224 0.776 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.458 -15.477 12.137 25.016 hybrid contribution 0.741 1.329 0.575 1.627 sum 16.199 -14.148 12.712 24.983 Atomic orbital electron populations 1.70007 1.07968 1.27412 1.52235 1.25721 0.95370 1.02154 0.94944 0.85744 0.79427 0.79125 0.78570 1.20200 1.22288 1.16631 1.20683 0.91579 0.91488 1.47965 1.19343 0.96915 0.93856 0.93015 1.21320 0.94313 0.97227 0.98811 1.21162 0.94967 0.89727 0.92896 0.91515 1.60359 1.28514 1.39088 1.07747 1.23457 0.89601 0.84673 0.76238 0.82726 1.92943 1.95342 1.65205 1.65340 1.86658 1.43267 1.48491 1.42111 1.21879 0.90859 0.89857 0.92053 1.22083 1.03815 0.94921 0.92224 1.22553 0.90565 0.95276 1.00806 1.23786 0.93967 0.96225 0.95990 1.98421 1.72196 1.49153 1.77560 1.72760 1.27186 1.02170 1.06171 1.73541 1.05390 1.08753 1.24107 1.22156 0.98520 0.95887 1.00126 1.19772 0.94275 0.96663 0.95127 0.92948 0.98606 0.96045 0.94553 0.94465 0.81268 0.77633 0.77189 0.92764 0.91265 0.95899 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 12.73 21.45 0.27 -55.74 16 2 C 0.02 0.86 5.46 84.66 0.46 1.33 16 3 Si 0.95 42.47 27.53 68.60 1.89 44.36 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.24 -9.86 6.11 99.48 0.61 -9.25 16 7 C -0.50 -26.03 5.51 -16.17 -0.09 -26.12 16 8 C 0.01 0.35 5.97 30.11 0.18 0.53 16 9 C -0.08 -3.46 5.54 30.66 0.17 -3.29 16 10 C 0.12 4.35 2.30 44.89 0.10 4.46 16 11 H 0.07 2.52 7.68 -2.39 -0.02 2.50 16 12 N -0.71 -21.84 5.15 -605.63 -3.12 -24.95 16 13 C 0.42 10.97 4.29 127.69 0.55 11.52 16 14 H 0.16 3.10 7.12 -2.39 -0.02 3.08 16 15 F -0.21 -6.68 16.29 44.97 0.73 -5.95 16 16 O -0.30 -6.77 10.31 -90.41 -0.93 -7.70 16 17 C 0.24 5.61 7.20 84.88 0.61 6.22 16 18 C -0.10 -1.37 10.16 22.61 0.23 -1.14 16 19 C -0.06 -0.78 9.99 22.52 0.23 -0.56 16 20 C 0.07 1.54 7.37 84.84 0.62 2.17 16 21 Cl 0.00 -0.02 29.13 -2.72 -0.08 -0.10 16 22 N -0.24 -7.07 11.48 -49.85 -0.57 -7.64 16 23 N -0.26 -8.14 9.08 -170.23 -1.55 -9.69 16 24 C -0.13 -4.41 5.18 30.64 0.16 -4.26 16 25 C -0.02 -0.87 5.59 30.09 0.17 -0.70 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.00 -0.24 8.14 -2.38 -0.02 -0.25 16 28 H 0.02 1.24 7.07 -2.39 -0.02 1.22 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.36 10.13 8.48 -89.69 -0.76 9.37 16 32 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.21 0.55 8.06 -2.91 -0.02 0.52 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.86 7.27 -2.39 -0.02 1.84 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.04 1.64 4.59 -2.38 -0.01 1.63 16 Total: -1.00 -69.97 323.93 0.30 -69.67 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.27 Total: 7.57 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 3.39 Total: -9.83 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.96 Total: -98.02 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.93 Total: -7.70 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.73 Total: -5.95 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.89 Total: 44.36 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -69.97 0.30 -69.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.511 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds