Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39064 * 120.32107 * 238.01228 * 3 2 1 5 5 Cl 1.73601 * 120.97166 * 0.25356 * 4 3 2 6 6 C 1.40798 * 118.06408 * 180.28162 * 4 3 2 7 7 C 1.40457 * 121.09407 * 179.97438 * 6 4 3 8 8 C 1.36189 * 119.65233 * 180.02562 * 7 6 4 9 9 C 1.39287 * 120.81593 * 0.02562 * 8 7 6 10 10 C 1.36166 * 121.06173 * 359.92783 * 9 8 7 11 11 C 1.40516 * 119.82807 * 0.09727 * 10 9 8 12 12 N 1.33864 * 120.70521 * 179.90019 * 11 10 9 13 13 C 1.31556 * 121.69816 * 180.02562 * 12 11 10 14 14 N 1.38300 * 119.33849 * 180.02562 * 13 12 11 15 15 C 1.46502 * 119.99507 * 359.97438 * 14 13 12 16 16 C 1.52997 * 109.46681 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47182 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47260 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00342 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00282 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99710 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00497 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46773 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47134 * 120.00024 * 22 20 18 25 25 H 1.48501 * 109.47337 * 240.00008 * 22 20 18 26 26 H 1.08007 * 120.17289 * 0.04766 * 7 6 4 27 27 H 1.08001 * 119.59500 * 179.97438 * 8 7 6 28 28 H 1.07999 * 119.47128 * 179.97438 * 9 8 7 29 29 H 1.07996 * 120.08937 * 180.02562 * 10 9 8 30 30 H 0.96995 * 119.99839 * 179.97438 * 14 13 12 31 31 H 1.08996 * 109.46815 * 299.99734 * 15 14 13 32 32 H 1.08999 * 109.46966 * 60.00345 * 15 14 13 33 33 H 1.09004 * 109.47424 * 300.00043 * 16 15 14 34 34 H 1.08999 * 109.47525 * 59.99528 * 16 15 14 35 35 H 1.09000 * 109.46901 * 299.99734 * 17 16 15 36 36 H 1.08991 * 109.47029 * 59.99755 * 17 16 15 37 37 H 0.96998 * 120.00251 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 0.6369 1.0181 5 17 2.4356 1.4375 2.3131 6 6 4.6767 0.6133 0.9679 7 6 5.4486 1.2359 1.9625 8 6 6.8076 1.1955 1.8846 9 6 7.4428 0.5444 0.8297 10 6 6.7251 -0.0702 -0.1507 11 6 5.3208 -0.0501 -0.1061 12 7 4.5979 -0.6469 -1.0617 13 6 3.2826 -0.6397 -1.0395 14 7 2.5843 -1.2722 -2.0519 15 6 3.3097 -1.9409 -3.1350 16 6 2.3089 -2.5548 -4.1160 17 6 3.0664 -3.2538 -5.2468 18 6 2.0806 -3.8579 -6.2133 19 1 1.0199 -3.7542 -6.0384 20 6 2.5328 -4.5431 -7.3210 21 7 3.8245 -4.6699 -7.5338 22 14 1.3110 -5.2927 -8.5188 23 1 -0.0718 -5.0116 -8.0560 24 1 1.5116 -4.7006 -9.8659 25 1 1.5219 -6.7610 -8.5871 26 1 4.9668 1.7438 2.7851 27 1 7.4002 1.6749 2.6497 28 1 8.5218 0.5261 0.7892 29 1 7.2338 -0.5708 -0.9612 30 1 1.6144 -1.2731 -2.0449 31 1 3.9318 -1.2147 -3.6580 32 1 3.9400 -2.7268 -2.7190 33 1 1.6863 -3.2809 -3.5931 34 1 1.6787 -1.7687 -4.5318 35 1 3.6892 -2.5280 -5.7697 36 1 3.6961 -4.0399 -4.8305 37 1 4.1426 -5.1516 -8.3132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157642199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = 52.136628 kcal Electronic energy + Delta-G solvation = -21861.998887 eV Core-core repulsion = 18435.987186 eV Total energy + Delta-G solvation = -3426.011701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05337 -39.31246 -38.35783 -37.64121 -36.91010 -35.32324 -34.26835 -33.32452 -31.56882 -30.49321 -28.34374 -26.06006 -25.17902 -23.75750 -23.10589 -22.18501 -20.86637 -19.48246 -18.79140 -18.36307 -17.08009 -16.76660 -16.71039 -16.51055 -15.91446 -15.77227 -15.50574 -15.21263 -14.80196 -14.65069 -14.41106 -14.29941 -14.14644 -14.03588 -13.70323 -13.50475 -12.98752 -12.72925 -12.66562 -12.59416 -12.46765 -12.36802 -12.25484 -11.70450 -11.51430 -11.20822 -11.19363 -10.74199 -10.71655 -10.56025 -9.53538 -8.74288 -8.20680 -6.31276 -1.09557 -0.26876 0.42433 0.73004 1.30728 1.39694 1.40340 1.53025 1.53717 1.93679 2.16833 2.40723 2.47317 3.02721 3.13028 3.22190 3.51715 3.67540 3.81817 3.96040 4.17667 4.22942 4.26117 4.37412 4.53403 4.56833 4.71614 4.96247 5.00828 5.08596 5.13646 5.25275 5.40307 5.49733 5.55013 5.70982 5.74779 5.83850 5.94032 6.10145 6.15830 6.23567 6.85298 6.98948 7.37882 8.91305 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.002762 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.359575 B =10133.827576 C =11664.435161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.268 3.732 3 C -0.136 4.136 4 C 0.116 3.884 5 Cl -0.010 7.010 6 C -0.161 4.161 7 C -0.073 4.073 8 C -0.127 4.127 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.200 3.800 12 N -0.556 5.556 13 C 0.463 3.537 14 N -0.703 5.703 15 C 0.146 3.854 16 C -0.109 4.109 17 C 0.029 3.971 18 C -0.543 4.543 19 H 0.059 0.941 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.151 0.849 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.140 0.860 30 H 0.411 0.589 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H -0.002 1.002 36 H -0.002 1.002 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 14.881 23.919 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.047 4.047 3 C -0.147 4.147 4 C 0.078 3.922 5 Cl 0.020 6.980 6 C -0.166 4.166 7 C -0.092 4.092 8 C -0.146 4.146 9 C -0.072 4.072 10 C -0.158 4.158 11 C 0.075 3.925 12 N -0.278 5.278 13 C 0.211 3.789 14 N -0.333 5.333 15 C 0.023 3.977 16 C -0.147 4.147 17 C -0.008 4.008 18 C -0.581 4.581 19 H 0.077 0.923 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.787 3.213 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.158 0.842 30 H 0.248 0.752 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.030 14.372 23.096 27.863 hybrid contribution -1.109 -0.242 -0.377 1.196 sum 4.920 14.130 22.719 27.203 Atomic orbital electron populations 1.81280 1.11912 1.09059 1.07565 1.25094 0.91956 0.93641 0.94005 1.16106 0.85161 1.12809 1.00595 1.21360 0.92007 0.90663 0.88156 1.98425 1.77027 1.76566 1.46013 1.18487 0.90286 1.07222 1.00612 1.21251 0.94873 0.96547 0.96545 1.21300 0.94035 0.99781 0.99440 1.21457 1.02176 0.92045 0.91476 1.20959 0.89938 1.03026 1.01847 1.18979 0.94994 0.90743 0.87757 1.67666 1.04110 1.26684 1.29295 1.18111 0.88119 0.87194 0.85498 1.44787 1.08749 1.56269 1.23529 1.21285 0.94336 0.95894 0.86223 1.21657 0.97843 0.99279 0.95947 1.18881 0.95006 0.94385 0.92563 1.21690 0.93715 1.34348 1.08388 0.92282 1.25934 0.97030 0.96781 0.99944 1.70091 1.14653 1.43079 1.29218 0.85435 0.79238 0.78082 0.78507 1.18823 1.20363 1.20357 0.83151 0.81648 0.81694 0.84188 0.75193 0.91866 0.91854 0.92256 0.92253 0.98372 0.98363 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -12.12 18.54 19.00 0.35 -11.77 16 2 C 0.27 6.95 13.17 88.33 1.16 8.12 16 3 C -0.14 -3.31 5.77 -21.04 -0.12 -3.43 16 4 C 0.12 2.38 6.42 23.09 0.15 2.52 16 5 Cl -0.01 -0.17 26.76 -2.72 -0.07 -0.24 16 6 C -0.16 -3.11 5.74 -21.25 -0.12 -3.24 16 7 C -0.07 -0.93 9.46 22.33 0.21 -0.72 16 8 C -0.13 -1.13 9.96 22.04 0.22 -0.91 16 9 C -0.05 -0.55 9.94 22.04 0.22 -0.33 16 10 C -0.14 -2.45 9.97 22.34 0.22 -2.23 16 11 C 0.20 4.60 6.61 40.25 0.27 4.87 16 12 N -0.56 -15.75 9.45 -185.50 -1.75 -17.51 16 13 C 0.46 12.87 7.49 134.13 1.00 13.87 16 14 N -0.70 -20.57 5.61 -344.24 -1.93 -22.50 16 15 C 0.15 4.95 5.65 86.38 0.49 5.44 16 16 C -0.11 -4.32 5.27 30.59 0.16 -4.15 16 17 C 0.03 1.51 4.97 29.85 0.15 1.66 16 18 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.00 0.06 5.46 84.65 0.46 0.53 16 21 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 22 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H 0.15 1.33 7.03 -2.91 -0.02 1.31 16 27 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 28 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.41 11.33 7.26 -92.71 -0.67 10.65 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.19 342.85 4.06 -63.14 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.45 Total: 6.95 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 4.70 Total: -8.44 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.05 Total: -107.68 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.07 Total: -0.24 kcal Total: -67.19 4.06 -63.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.272 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds