Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99868 * 228.78785 * 3 2 1 5 5 N 3.51033 * 140.68843 * 228.79460 * 2 1 3 6 6 C 1.41129 * 120.00471 * 48.79603 * 3 2 1 7 7 C 1.38955 * 119.99909 * 353.81905 * 6 3 2 8 8 H 1.08000 * 119.99725 * 332.09755 * 7 6 3 9 9 C 1.40867 * 120.00090 * 152.09665 * 7 6 3 10 10 N 1.30314 * 119.99832 * 352.06773 * 9 7 6 11 11 Si 1.86796 * 119.99812 * 172.06634 * 9 7 6 12 12 H 1.48503 * 109.47279 * 60.00017 * 11 9 7 13 13 H 1.48504 * 109.47078 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47294 * 299.99759 * 11 9 7 15 15 N 1.38428 * 120.00272 * 173.82426 * 6 3 2 16 16 C 1.38486 * 119.99834 * 122.94832 * 15 6 3 17 17 N 1.31983 * 120.14672 * 0.51615 * 16 15 6 18 18 C 1.32552 * 122.59953 * 179.75281 * 17 16 15 19 19 C 1.36197 * 122.03379 * 0.53863 * 18 17 16 20 20 C 1.40724 * 118.92083 * 359.74134 * 19 18 17 21 21 C 1.40387 * 121.92352 * 180.02562 * 20 19 18 22 22 C 1.35865 * 119.84289 * 180.02562 * 21 20 19 23 23 C 1.40665 * 120.82752 * 359.95133 * 22 21 20 24 24 C 1.43201 * 119.72925 * 180.02562 * 23 22 21 25 25 N 9.26034 * 164.89380 * 135.69364 * 2 1 3 26 26 C 1.38797 * 120.54279 * 359.97438 * 23 22 21 27 27 C 1.39773 * 119.32849 * 0.02562 * 26 23 22 28 28 H 0.97003 * 120.00105 * 185.03638 * 10 9 7 29 29 H 0.96993 * 119.99502 * 302.66928 * 15 6 3 30 30 H 1.08005 * 118.98488 * 180.27991 * 18 17 16 31 31 H 1.08000 * 120.54495 * 179.71670 * 19 18 17 32 32 H 1.08001 * 120.07774 * 0.04093 * 21 20 19 33 33 H 1.07999 * 119.58941 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.33527 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.8181 0.9330 5 7 3.8521 1.4650 1.6732 6 6 3.2741 -0.8041 -0.9195 7 6 2.5859 -1.6924 -1.7370 8 1 1.6455 -2.1102 -1.4091 9 6 3.1147 -2.0479 -2.9933 10 7 4.1651 -1.4309 -3.4562 11 14 2.3104 -3.4036 -3.9954 12 1 0.9031 -3.0325 -4.2906 13 1 3.0526 -3.5846 -5.2689 14 1 2.3365 -4.6718 -3.2234 15 7 4.6523 -0.7087 -1.0070 16 6 5.4377 -1.8336 -0.8179 17 7 4.8746 -3.0000 -0.5641 18 6 5.5787 -4.1079 -0.3799 19 6 6.9398 -4.1155 -0.4297 20 6 7.6180 -2.9103 -0.6902 21 6 9.0188 -2.8461 -0.7560 22 6 9.6301 -1.6596 -1.0098 23 6 8.8765 -0.4887 -1.2096 24 6 9.5451 0.7493 -1.4761 25 7 10.0764 1.7270 -1.6857 26 6 7.4902 -0.5237 -1.1516 27 6 6.8462 -1.7366 -0.8914 28 1 4.4858 -1.6240 -4.3511 29 1 5.0677 0.1451 -1.2049 30 1 5.0572 -5.0323 -0.1800 31 1 7.4897 -5.0315 -0.2714 32 1 9.6092 -3.7379 -0.6056 33 1 10.7080 -1.6148 -1.0592 34 1 6.9149 0.3772 -1.3059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 144.916584 kcal Electronic energy + Delta-G solvation = -24093.000847 eV Core-core repulsion = 20569.904893 eV Total energy + Delta-G solvation = -3523.095954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78024 -38.19155 -37.18002 -36.01463 -35.32100 -34.77065 -33.98233 -32.26744 -31.34090 -30.24355 -28.64199 -27.15938 -24.56194 -23.85678 -22.28338 -21.18427 -19.78199 -18.89438 -18.18944 -17.34754 -16.43860 -16.34130 -15.87075 -15.58317 -14.84477 -14.44241 -14.18221 -13.99108 -13.86564 -13.62874 -13.50247 -12.89933 -12.72452 -12.63964 -12.61803 -12.34012 -11.94419 -11.83325 -11.73066 -11.69518 -11.61101 -11.52594 -11.26321 -11.09153 -10.96429 -10.84113 -10.36201 -10.06970 -9.21073 -9.03376 -8.97098 -8.09116 -7.74849 -6.92991 -5.44256 0.46596 0.88118 1.93521 2.25009 2.70073 2.70398 2.73138 2.75157 2.89093 3.39428 3.51029 3.61426 3.82455 3.89578 4.01935 4.21988 4.28105 4.40765 4.60815 4.68207 4.88173 5.07071 5.11579 5.15894 5.31418 5.43788 5.59917 5.73956 5.85712 5.96525 5.98516 6.20114 6.20543 6.28626 6.46605 6.63328 6.80231 7.03256 7.24002 7.48942 7.50603 7.70866 7.91050 8.16452 8.69555 8.90280 9.10474 9.18416 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.005544 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.552264 B = 5049.425717 C = 6174.379822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.327 3.673 3 C -0.307 4.307 4 C 0.306 3.694 5 N -0.533 5.533 6 C 0.380 3.620 7 C -0.343 4.343 8 H 0.112 0.888 9 C 0.080 3.920 10 N -0.736 5.736 11 Si 0.926 3.074 12 H -0.254 1.254 13 H -0.271 1.271 14 H -0.249 1.249 15 N -0.620 5.620 16 C 0.486 3.514 17 N -0.536 5.536 18 C 0.166 3.834 19 C -0.260 4.260 20 C 0.042 3.958 21 C -0.127 4.127 22 C -0.055 4.055 23 C -0.068 4.068 24 C 0.263 3.737 25 N -0.431 5.431 26 C 0.003 3.997 27 C -0.155 4.155 28 H 0.302 0.698 29 H 0.408 0.592 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 -10.019 -3.657 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.019 3.981 3 C -0.325 4.325 4 C -0.001 4.001 5 N -0.215 5.215 6 C 0.276 3.724 7 C -0.371 4.371 8 H 0.130 0.870 9 C -0.151 4.151 10 N -0.356 5.356 11 Si 0.748 3.252 12 H -0.178 1.178 13 H -0.196 1.196 14 H -0.172 1.172 15 N -0.241 5.241 16 C 0.238 3.762 17 N -0.255 5.255 18 C 0.017 3.983 19 C -0.284 4.284 20 C 0.037 3.963 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.073 4.073 24 C -0.052 4.052 25 N -0.106 5.106 26 C -0.021 4.021 27 C -0.161 4.161 28 H 0.114 0.886 29 H 0.246 0.754 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.191 -7.611 -2.929 12.288 hybrid contribution 0.895 -0.781 -0.969 1.533 sum 10.087 -8.392 -3.899 13.688 Atomic orbital electron populations 1.81063 1.12190 1.14958 1.13123 1.24607 0.91226 0.91036 0.91272 1.12850 0.83173 1.22288 1.14201 1.25253 0.92548 0.91049 0.91241 1.81070 1.09873 1.16130 1.14418 1.16642 0.79506 0.88919 0.87294 1.20088 1.04509 1.15404 0.97055 0.87026 1.26472 0.93383 0.96260 0.98941 1.69388 1.16425 1.32202 1.17563 0.85973 0.80512 0.80557 0.78206 1.17759 1.19577 1.17213 1.41607 1.05049 1.07992 1.69468 1.18177 0.85281 0.87180 0.85527 1.67327 1.39451 0.97267 1.21420 1.22010 0.90905 0.95383 0.90050 1.21400 0.95763 0.97539 1.13656 1.17995 0.93285 0.92333 0.92730 1.20710 0.92934 0.97939 1.02966 1.20704 0.99687 0.90936 0.96228 1.15754 0.91976 0.87844 1.11693 1.25564 0.93483 0.92858 0.93280 1.81073 1.08637 1.10956 1.09963 1.21160 0.92549 0.97169 0.91173 1.18216 0.92904 0.94428 1.10514 0.88591 0.75352 0.83371 0.85225 0.84672 0.85337 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.42 18.54 41.84 0.78 -11.64 16 2 C 0.33 7.31 14.06 -22.47 -0.32 7.00 16 3 C -0.31 -6.48 5.88 -104.95 -0.62 -7.10 16 4 C 0.31 6.68 14.82 -22.49 -0.33 6.34 16 5 N -0.53 -12.12 18.53 41.82 0.78 -11.35 16 6 C 0.38 7.51 5.50 -83.52 -0.46 7.05 16 7 C -0.34 -6.75 7.32 -38.32 -0.28 -7.03 16 8 H 0.11 2.25 7.31 -52.49 -0.38 1.87 16 9 C 0.08 1.44 4.90 -17.20 -0.08 1.36 16 10 N -0.74 -13.16 11.42 55.60 0.63 -12.52 16 11 Si 0.93 14.48 29.58 -169.99 -5.03 9.45 16 12 H -0.25 -4.09 7.11 56.52 0.40 -3.69 16 13 H -0.27 -4.14 7.11 56.52 0.40 -3.74 16 14 H -0.25 -3.91 7.11 56.52 0.40 -3.51 16 15 N -0.62 -11.01 3.31 -9.42 -0.03 -11.04 16 16 C 0.49 8.20 6.32 -155.02 -0.98 7.22 16 17 N -0.54 -9.16 8.51 -12.39 -0.11 -9.27 16 18 C 0.17 2.28 11.06 -17.98 -0.20 2.08 16 19 C -0.26 -3.11 9.86 -39.38 -0.39 -3.50 16 20 C 0.04 0.54 5.75 -106.75 -0.61 -0.07 16 21 C -0.13 -1.28 9.77 -39.62 -0.39 -1.67 16 22 C -0.05 -0.55 9.65 -39.52 -0.38 -0.93 16 23 C -0.07 -0.83 5.73 -106.85 -0.61 -1.44 16 24 C 0.26 3.55 15.28 -22.59 -0.35 3.20 16 25 N -0.43 -6.66 18.51 41.70 0.77 -5.89 16 26 C 0.00 0.03 9.24 -38.80 -0.36 -0.32 16 27 C -0.15 -2.27 5.75 -106.72 -0.61 -2.88 16 28 H 0.30 4.99 8.29 -40.82 -0.34 4.66 16 29 H 0.41 6.73 6.96 -40.82 -0.28 6.45 16 30 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.70 6.50 -52.49 -0.34 1.36 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -25.49 331.91 -6.01 -31.50 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -1.83 Total: 6.45 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: -6.97 Total: 9.30 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 2.82 Total: -61.71 kcal Atomic # 14 Polarization: 14.48 SS G_CDS: -5.03 Total: 9.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.49 -6.01 -31.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.417 kcal (2) G-P(sol) polarization free energy of solvation -25.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds