Wall clock time and date at job start Tue Mar 31 2020 11:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00153 * 299.81307 * 3 2 1 5 5 N 3.51044 * 140.68590 * 299.81833 * 2 1 3 6 6 C 1.41142 * 119.99797 * 119.82123 * 3 2 1 7 7 C 1.38956 * 119.99819 * 5.25244 * 6 3 2 8 8 H 1.07995 * 120.00163 * 338.71389 * 7 6 3 9 9 C 1.40861 * 119.99776 * 158.71876 * 7 6 3 10 10 N 1.30329 * 119.99894 * 350.90824 * 9 7 6 11 11 Si 1.86792 * 119.99885 * 170.91257 * 9 7 6 12 12 H 1.48498 * 109.47457 * 89.99651 * 11 9 7 13 13 H 1.48511 * 109.47033 * 209.99637 * 11 9 7 14 14 H 1.48502 * 109.47195 * 329.99224 * 11 9 7 15 15 N 1.38409 * 119.99815 * 185.25195 * 6 3 2 16 16 C 1.38911 * 119.99778 * 119.61877 * 15 6 3 17 17 C 1.40023 * 118.82323 * 353.62645 * 16 15 6 18 18 C 1.38824 * 119.43148 * 179.97438 * 17 16 15 19 19 C 1.43205 * 121.34722 * 180.02562 * 18 17 16 20 20 N 7.03014 * 111.00655 * 67.55407 * 2 1 3 21 21 C 1.46424 * 117.30203 * 0.02562 * 18 17 16 22 22 C 1.39877 * 121.52327 * 180.02562 * 21 18 17 23 23 C 1.36365 * 119.59771 * 179.97438 * 22 21 18 24 24 C 1.39270 * 120.78857 * 0.02562 * 23 22 21 25 25 C 1.36141 * 121.06906 * 359.96609 * 24 23 22 26 26 C 1.40614 * 119.72777 * 0.02823 * 25 24 23 27 27 N 1.31464 * 118.82116 * 173.60586 * 16 15 6 28 28 H 0.96997 * 119.99979 * 185.05827 * 10 9 7 29 29 H 0.97002 * 119.99689 * 299.61802 * 15 6 3 30 30 H 1.08003 * 120.28583 * 0.02562 * 17 16 15 31 31 H 1.08003 * 120.20073 * 0.02562 * 22 21 18 32 32 H 1.08003 * 119.60848 * 180.27989 * 23 22 21 33 33 H 1.08002 * 119.46609 * 179.97438 * 24 23 22 34 34 H 1.07998 * 120.13941 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.6156 1.0760 5 7 3.8520 -1.1059 1.9297 6 6 3.2734 0.6088 -1.0605 7 6 2.5826 1.3013 -2.0475 8 1 1.5343 1.1018 -2.2140 9 6 3.2496 2.2632 -2.8310 10 7 4.4599 2.6326 -2.5187 11 14 2.3996 3.0096 -4.3174 12 1 1.6550 4.2257 -3.9031 13 1 3.4157 3.3747 -5.3372 14 1 1.4526 2.0216 -4.8940 15 7 4.6532 0.5155 -1.1172 16 6 5.2639 -0.0921 -2.2069 17 6 4.4613 -0.7205 -3.1669 18 6 5.0584 -1.3312 -4.2613 19 6 4.2772 -1.9851 -5.2677 20 7 3.6561 -2.5058 -6.0657 21 6 6.5194 -1.2798 -4.3449 22 6 7.2121 -1.8656 -5.4096 23 6 8.5733 -1.7937 -5.4483 24 6 9.2819 -1.1445 -4.4403 25 6 8.6379 -0.5641 -3.3907 26 6 7.2347 -0.6182 -3.3173 27 7 6.5748 -0.0563 -2.3001 28 1 4.8917 3.3468 -3.0128 29 1 5.1936 0.8744 -0.3961 30 1 3.3869 -0.7292 -3.0574 31 1 6.6721 -2.3710 -6.1966 32 1 9.1081 -2.2420 -6.2726 33 1 10.3598 -1.1007 -4.4922 34 1 9.2023 -0.0642 -2.6174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:46 Heat of formation + Delta-G solvation = 148.757599 kcal Electronic energy + Delta-G solvation = -24076.802885 eV Core-core repulsion = 20553.873489 eV Total energy + Delta-G solvation = -3522.929395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58846 -38.40519 -36.79022 -36.30875 -35.22284 -34.83632 -33.61706 -33.08647 -30.99860 -30.07246 -28.66640 -27.35929 -24.72236 -23.44139 -22.53019 -21.55670 -19.65859 -18.52188 -17.88301 -17.47506 -17.28147 -16.41897 -15.52358 -15.32364 -14.84979 -14.56708 -14.38390 -14.00560 -13.82245 -13.48052 -13.30881 -13.00413 -12.88931 -12.73522 -12.48766 -12.43944 -12.14046 -11.89897 -11.86262 -11.68227 -11.66286 -11.48403 -11.31552 -11.13394 -11.03842 -10.77282 -10.28392 -10.12830 -9.71705 -9.26982 -8.47386 -8.26155 -7.90420 -7.07906 -5.63814 0.29500 1.10933 1.76386 1.95214 2.57529 2.59860 2.66831 2.70862 3.13686 3.26927 3.34162 3.45862 3.72795 3.78451 3.94440 4.01947 4.20065 4.40146 4.64630 4.81117 4.89530 5.01248 5.09914 5.23089 5.37225 5.43298 5.53882 5.64721 5.84391 6.04023 6.10138 6.14104 6.19091 6.43178 6.48389 6.55149 6.83255 6.93574 7.03167 7.40948 7.42949 7.50984 7.90761 8.02509 8.57774 8.83390 8.98811 9.02253 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.005421 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.020729 B = 5163.970221 C = 5882.863443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.323 3.677 3 C -0.302 4.302 4 C 0.306 3.694 5 N -0.525 5.525 6 C 0.371 3.629 7 C -0.378 4.378 8 H 0.117 0.883 9 C 0.067 3.933 10 N -0.710 5.710 11 Si 0.917 3.083 12 H -0.253 1.253 13 H -0.264 1.264 14 H -0.246 1.246 15 N -0.625 5.625 16 C 0.473 3.527 17 C -0.120 4.120 18 C 0.036 3.964 19 C 0.265 3.735 20 N -0.408 5.408 21 C -0.122 4.122 22 C -0.082 4.082 23 C -0.141 4.141 24 C -0.096 4.096 25 C -0.106 4.106 26 C 0.192 3.808 27 N -0.538 5.538 28 H 0.306 0.694 29 H 0.413 0.587 30 H 0.161 0.839 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 0.926 -9.252 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.015 3.985 3 C -0.321 4.321 4 C -0.002 4.002 5 N -0.206 5.206 6 C 0.267 3.733 7 C -0.406 4.406 8 H 0.134 0.866 9 C -0.166 4.166 10 N -0.328 5.328 11 Si 0.737 3.263 12 H -0.177 1.177 13 H -0.188 1.188 14 H -0.169 1.169 15 N -0.249 5.249 16 C 0.223 3.777 17 C -0.147 4.147 18 C 0.025 3.975 19 C -0.050 4.050 20 N -0.083 5.083 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.160 4.160 24 C -0.115 4.115 25 C -0.126 4.126 26 C 0.069 3.931 27 N -0.258 5.258 28 H 0.119 0.881 29 H 0.251 0.749 30 H 0.178 0.822 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.620 -0.135 -8.645 12.209 hybrid contribution -0.059 0.744 -0.954 1.211 sum 8.561 0.609 -9.599 12.876 Atomic orbital electron populations 1.81091 1.12156 1.16287 1.11216 1.24632 0.91236 0.90840 0.91832 1.12842 0.83072 1.34347 1.01798 1.25154 0.92601 0.90733 0.91696 1.81116 1.09593 1.16921 1.13007 1.16751 0.79458 0.86873 0.90205 1.20403 0.98987 1.10783 1.10406 0.86564 1.26513 0.94501 0.96560 0.99014 1.69482 1.10756 1.18668 1.33860 0.86024 0.80549 0.80949 0.78748 1.17749 1.18812 1.16878 1.41332 1.04900 1.58504 1.20179 1.17746 0.87442 0.86772 0.85762 1.22190 1.02787 0.96899 0.92794 1.16901 0.90472 0.98421 0.91698 1.25316 0.93094 0.93551 0.93057 1.81285 1.08408 1.08833 1.09792 1.19258 0.90502 1.04620 0.98453 1.20698 0.94631 0.98168 0.96575 1.20723 0.93888 1.01777 0.99659 1.20790 0.99951 0.96957 0.93826 1.20688 0.91533 1.01098 0.99246 1.18267 0.93574 0.92706 0.88510 1.67036 1.07615 1.24964 1.26175 0.88129 0.74871 0.82198 0.86388 0.86102 0.85795 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.71 18.54 41.84 0.78 -10.93 16 2 C 0.32 6.82 13.91 -22.47 -0.31 6.51 16 3 C -0.30 -6.01 5.88 -104.95 -0.62 -6.63 16 4 C 0.31 6.43 14.81 -22.46 -0.33 6.09 16 5 N -0.52 -11.67 18.54 41.85 0.78 -10.89 16 6 C 0.37 6.84 4.90 -83.53 -0.41 6.43 16 7 C -0.38 -6.82 6.82 -38.32 -0.26 -7.08 16 8 H 0.12 2.13 7.01 -52.49 -0.37 1.76 16 9 C 0.07 1.13 4.79 -17.20 -0.08 1.05 16 10 N -0.71 -12.27 11.02 55.60 0.61 -11.65 16 11 Si 0.92 13.77 29.58 -169.99 -5.03 8.74 16 12 H -0.25 -3.84 7.11 56.52 0.40 -3.44 16 13 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16 14 H -0.25 -3.80 7.11 56.52 0.40 -3.40 16 15 N -0.63 -11.00 3.32 -9.76 -0.03 -11.03 16 16 C 0.47 8.09 6.14 -155.56 -0.96 7.13 16 17 C -0.12 -1.94 8.29 -38.70 -0.32 -2.26 16 18 C 0.04 0.54 5.93 -104.46 -0.62 -0.08 16 19 C 0.27 4.00 14.37 -22.43 -0.32 3.68 16 20 N -0.41 -6.57 18.55 41.89 0.78 -5.80 16 21 C -0.12 -1.79 5.90 -104.71 -0.62 -2.41 16 22 C -0.08 -1.02 9.46 -39.64 -0.38 -1.39 16 23 C -0.14 -1.50 9.97 -39.87 -0.40 -1.90 16 24 C -0.10 -1.00 9.94 -39.95 -0.40 -1.40 16 25 C -0.11 -1.34 9.99 -39.44 -0.39 -1.74 16 26 C 0.19 2.94 6.62 -84.90 -0.56 2.38 16 27 N -0.54 -9.08 10.28 -10.28 -0.11 -9.19 16 28 H 0.31 4.91 8.29 -40.82 -0.34 4.57 16 29 H 0.41 7.25 8.91 -40.82 -0.36 6.89 16 30 H 0.16 2.57 6.07 -52.48 -0.32 2.25 16 31 H 0.12 1.35 7.35 -52.48 -0.39 0.96 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -23.12 330.65 -6.06 -29.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -1.84 Total: 8.21 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -6.98 Total: 8.38 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 2.80 Total: -59.49 kcal Atomic # 14 Polarization: 13.77 SS G_CDS: -5.03 Total: 8.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -23.12 -6.06 -29.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.934 kcal (2) G-P(sol) polarization free energy of solvation -23.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds