Wall clock time and date at job start Tue Mar 31 2020 11:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00153 * 299.81307 * 3 2 1 5 5 N 3.51044 * 140.68590 * 299.81833 * 2 1 3 6 6 C 1.41142 * 119.99797 * 119.82123 * 3 2 1 7 7 C 1.38956 * 119.99819 * 5.25244 * 6 3 2 8 8 H 1.07995 * 120.00163 * 338.71389 * 7 6 3 9 9 C 1.40861 * 119.99776 * 158.71876 * 7 6 3 10 10 N 1.30329 * 119.99894 * 350.90824 * 9 7 6 11 11 Si 1.86792 * 119.99885 * 170.91257 * 9 7 6 12 12 H 1.48498 * 109.47457 * 89.99651 * 11 9 7 13 13 H 1.48511 * 109.47033 * 209.99637 * 11 9 7 14 14 H 1.48502 * 109.47195 * 329.99224 * 11 9 7 15 15 N 1.38409 * 119.99815 * 185.25195 * 6 3 2 16 16 C 1.38911 * 119.99778 * 119.61877 * 15 6 3 17 17 C 1.40023 * 118.82323 * 353.62645 * 16 15 6 18 18 C 1.38824 * 119.43148 * 179.97438 * 17 16 15 19 19 C 1.43205 * 121.34722 * 180.02562 * 18 17 16 20 20 N 7.03014 * 111.00655 * 67.55407 * 2 1 3 21 21 C 1.46424 * 117.30203 * 0.02562 * 18 17 16 22 22 C 1.39877 * 121.52327 * 180.02562 * 21 18 17 23 23 C 1.36365 * 119.59771 * 179.97438 * 22 21 18 24 24 C 1.39270 * 120.78857 * 0.02562 * 23 22 21 25 25 C 1.36141 * 121.06906 * 359.96609 * 24 23 22 26 26 C 1.40614 * 119.72777 * 0.02823 * 25 24 23 27 27 N 1.31464 * 118.82116 * 173.60586 * 16 15 6 28 28 H 0.96997 * 119.99979 * 185.05827 * 10 9 7 29 29 H 0.97002 * 119.99689 * 299.61802 * 15 6 3 30 30 H 1.08003 * 120.28583 * 0.02562 * 17 16 15 31 31 H 1.08003 * 120.20073 * 0.02562 * 22 21 18 32 32 H 1.08003 * 119.60848 * 180.27989 * 23 22 21 33 33 H 1.08002 * 119.46609 * 179.97438 * 24 23 22 34 34 H 1.07998 * 120.13941 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.6156 1.0760 5 7 3.8520 -1.1059 1.9297 6 6 3.2734 0.6088 -1.0605 7 6 2.5826 1.3013 -2.0475 8 1 1.5343 1.1018 -2.2140 9 6 3.2496 2.2632 -2.8310 10 7 4.4599 2.6326 -2.5187 11 14 2.3996 3.0096 -4.3174 12 1 1.6550 4.2257 -3.9031 13 1 3.4157 3.3747 -5.3372 14 1 1.4526 2.0216 -4.8940 15 7 4.6532 0.5155 -1.1172 16 6 5.2639 -0.0921 -2.2069 17 6 4.4613 -0.7205 -3.1669 18 6 5.0584 -1.3312 -4.2613 19 6 4.2772 -1.9851 -5.2677 20 7 3.6561 -2.5058 -6.0657 21 6 6.5194 -1.2798 -4.3449 22 6 7.2121 -1.8656 -5.4096 23 6 8.5733 -1.7937 -5.4483 24 6 9.2819 -1.1445 -4.4403 25 6 8.6379 -0.5641 -3.3907 26 6 7.2347 -0.6182 -3.3173 27 7 6.5748 -0.0563 -2.3001 28 1 4.8917 3.3468 -3.0128 29 1 5.1936 0.8744 -0.3961 30 1 3.3869 -0.7292 -3.0574 31 1 6.6721 -2.3710 -6.1966 32 1 9.1081 -2.2420 -6.2726 33 1 10.3598 -1.1007 -4.4922 34 1 9.2023 -0.0642 -2.6174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:45 Heat of formation + Delta-G solvation = 140.039937 kcal Electronic energy + Delta-G solvation = -24077.180911 eV Core-core repulsion = 20553.873489 eV Total energy + Delta-G solvation = -3523.307421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74024 -39.66179 -38.00505 -37.66784 -36.70627 -36.51629 -34.96674 -34.24964 -32.35754 -31.10644 -29.85209 -28.85563 -25.91667 -24.63452 -23.56868 -22.88473 -21.02939 -19.86633 -19.18379 -18.66469 -18.51386 -17.79524 -16.79408 -16.57772 -15.93517 -15.74128 -15.45848 -15.23112 -14.92055 -14.68458 -14.56504 -14.50570 -14.35875 -14.16613 -13.89784 -13.58397 -13.47288 -13.39471 -13.38174 -13.20421 -13.02125 -12.72011 -12.59579 -12.41003 -12.28518 -12.08031 -11.59219 -11.27800 -10.93823 -10.48090 -9.79626 -9.41076 -9.20139 -8.34569 -7.17413 -0.85048 -0.00580 0.57699 0.73080 1.34199 1.35326 1.46766 1.49478 1.95416 2.00859 2.05448 2.16020 2.25126 2.25869 2.50055 2.56882 2.66143 3.26476 3.40106 3.55065 3.72694 3.78190 3.87076 4.15116 4.19074 4.40422 4.48896 4.59398 4.62964 4.66228 4.77028 5.05292 5.15934 5.32299 5.40670 5.50806 5.62065 5.65511 5.93867 6.02390 6.09900 6.19928 6.53242 6.69397 7.16512 7.31194 7.36869 7.66605 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.005421 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.020729 B = 5163.970221 C = 5882.863443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.330 3.670 3 C -0.317 4.317 4 C 0.315 3.685 5 N -0.554 5.554 6 C 0.373 3.627 7 C -0.370 4.370 8 H 0.113 0.887 9 C 0.049 3.951 10 N -0.712 5.712 11 Si 0.961 3.039 12 H -0.252 1.252 13 H -0.259 1.259 14 H -0.253 1.253 15 N -0.630 5.630 16 C 0.458 3.542 17 C -0.135 4.135 18 C 0.040 3.960 19 C 0.280 3.720 20 N -0.424 5.424 21 C -0.129 4.129 22 C -0.097 4.097 23 C -0.124 4.124 24 C -0.081 4.081 25 C -0.118 4.118 26 C 0.165 3.835 27 N -0.547 5.547 28 H 0.314 0.686 29 H 0.409 0.591 30 H 0.155 0.845 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.083 1.149 -11.621 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.023 3.977 3 C -0.336 4.336 4 C 0.009 3.991 5 N -0.237 5.237 6 C 0.269 3.731 7 C -0.397 4.397 8 H 0.131 0.869 9 C -0.183 4.183 10 N -0.329 5.329 11 Si 0.781 3.219 12 H -0.176 1.176 13 H -0.183 1.183 14 H -0.176 1.176 15 N -0.255 5.255 16 C 0.209 3.791 17 C -0.162 4.162 18 C 0.029 3.971 19 C -0.035 4.035 20 N -0.100 5.100 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.142 4.142 24 C -0.100 4.100 25 C -0.138 4.138 26 C 0.044 3.956 27 N -0.267 5.267 28 H 0.127 0.873 29 H 0.247 0.753 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.915 0.077 -11.023 15.513 hybrid contribution -0.502 0.684 -0.413 0.944 sum 10.413 0.761 -11.436 15.485 Atomic orbital electron populations 1.81076 1.12753 1.17646 1.12144 1.24785 0.91395 0.90267 0.91220 1.12868 0.82544 1.35742 1.02404 1.25284 0.92119 0.90239 0.91438 1.81099 1.10387 1.18310 1.13906 1.16668 0.80008 0.86605 0.89836 1.20555 0.98873 1.10155 1.10124 0.86920 1.26916 0.94811 0.96475 1.00142 1.69483 1.11006 1.18410 1.34033 0.85371 0.79744 0.80143 0.76687 1.17554 1.18282 1.17578 1.41212 1.04327 1.59372 1.20583 1.17765 0.87738 0.87578 0.85986 1.22088 1.02477 0.98166 0.93445 1.16929 0.91018 0.97949 0.91184 1.25228 0.92603 0.93065 0.92652 1.81296 1.08854 1.09415 1.10423 1.19434 0.90119 1.04771 0.99090 1.20894 0.95709 0.98636 0.96291 1.21201 0.93200 0.99751 1.00075 1.21242 1.01860 0.94639 0.92242 1.20930 0.90454 1.01843 1.00534 1.18684 0.94788 0.93584 0.88580 1.67004 1.07599 1.25072 1.26981 0.87271 0.75258 0.82781 0.85512 0.82551 0.81996 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.06 18.54 19.00 0.35 -24.70 16 2 C 0.33 14.24 13.91 88.33 1.23 15.46 16 3 C -0.32 -12.90 5.88 -20.07 -0.12 -13.02 16 4 C 0.32 13.61 14.81 88.33 1.31 14.92 16 5 N -0.55 -25.22 18.54 19.01 0.35 -24.87 16 6 C 0.37 14.02 4.90 38.99 0.19 14.21 16 7 C -0.37 -13.38 6.82 23.08 0.16 -13.23 16 8 H 0.11 4.15 7.01 -2.91 -0.02 4.13 16 9 C 0.05 1.63 4.79 85.56 0.41 2.04 16 10 N -0.71 -24.06 11.02 21.98 0.24 -23.82 16 11 Si 0.96 27.09 29.58 68.60 2.03 29.12 16 12 H -0.25 -7.04 7.11 99.48 0.71 -6.33 16 13 H -0.26 -7.09 7.11 99.48 0.71 -6.38 16 14 H -0.25 -7.39 7.11 99.48 0.71 -6.68 16 15 N -0.63 -22.61 3.32 -184.81 -0.61 -23.22 16 16 C 0.46 15.83 6.14 133.59 0.82 16.65 16 17 C -0.14 -4.42 8.29 22.84 0.19 -4.23 16 18 C 0.04 1.19 5.93 -19.76 -0.12 1.07 16 19 C 0.28 8.24 14.37 88.32 1.27 9.51 16 20 N -0.42 -13.32 18.55 19.02 0.35 -12.97 16 21 C -0.13 -3.57 5.90 -19.92 -0.12 -3.69 16 22 C -0.10 -2.12 9.46 22.23 0.21 -1.91 16 23 C -0.12 -2.06 9.97 22.08 0.22 -1.84 16 24 C -0.08 -1.33 9.94 22.03 0.22 -1.11 16 25 C -0.12 -2.70 9.99 22.36 0.22 -2.48 16 26 C 0.17 4.87 6.62 40.28 0.27 5.14 16 27 N -0.55 -18.39 10.28 -186.43 -1.92 -20.31 16 28 H 0.31 9.67 8.29 -92.71 -0.77 8.90 16 29 H 0.41 14.81 8.91 -92.71 -0.83 13.98 16 30 H 0.15 5.10 6.07 -2.91 -0.02 5.08 16 31 H 0.13 2.55 7.35 -2.91 -0.02 2.53 16 32 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -49.67 330.65 7.56 -42.11 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.40 Total: 21.17 kcal Atomic # 6 Polarization: 31.13 SS G_CDS: 6.36 Total: 37.49 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -1.23 Total: -129.89 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: 2.03 Total: 29.12 kcal Total: -49.67 7.56 -42.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.150 kcal (2) G-P(sol) polarization free energy of solvation -49.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds