Wall clock time and date at job start Tue Mar 31 2020 11:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00082 * 2 1 4 4 H 1.48503 * 109.47070 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.46865 * 119.99954 * 3 2 1 6 6 H 1.48502 * 109.46915 * 240.00256 * 3 2 1 7 7 C 1.37873 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 186.73001 * 7 2 1 9 9 C 1.50702 * 120.00002 * 6.73659 * 7 2 1 10 10 H 1.09000 * 109.50387 * 34.21121 * 9 7 2 11 11 C 1.53117 * 109.50522 * 274.08787 * 9 7 2 12 12 C 1.53111 * 109.16487 * 182.40649 * 11 9 7 13 13 C 1.53039 * 109.27942 * 57.65073 * 12 11 9 14 14 N 1.46848 * 109.52583 * 300.82622 * 13 12 11 15 15 C 1.46895 * 110.99879 * 185.83602 * 14 13 12 16 16 H 1.09003 * 109.47231 * 180.98286 * 15 14 13 17 17 F 1.39908 * 109.47379 * 60.99104 * 15 14 13 18 18 O 1.42895 * 109.47389 * 300.98574 * 15 14 13 19 19 C 1.35681 * 117.00201 * 193.90769 * 18 15 14 20 20 C 1.39076 * 120.06172 * 185.42999 * 19 18 15 21 21 N 1.31995 * 119.94843 * 179.97438 * 20 19 18 22 22 C 1.32201 * 120.08094 * 0.02562 * 21 20 19 23 23 C 1.38370 * 120.12747 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 119.97735 * 180.02562 * 23 22 21 25 25 N 1.32327 * 120.04576 * 359.69981 * 23 22 21 26 26 C 1.46846 * 111.19831 * 61.73722 * 14 13 12 27 27 H 0.97000 * 120.00046 * 175.10043 * 1 2 3 28 28 H 1.09003 * 109.52344 * 302.31396 * 11 9 7 29 29 H 1.09004 * 109.52335 * 62.49592 * 11 9 7 30 30 H 1.09007 * 109.50462 * 297.71493 * 12 11 9 31 31 H 1.08999 * 109.54064 * 177.61340 * 12 11 9 32 32 H 1.09003 * 109.46559 * 180.80215 * 13 12 11 33 33 H 1.08997 * 109.45153 * 60.83689 * 13 12 11 34 34 H 1.07999 * 120.02495 * 0.02562 * 20 19 18 35 35 H 1.07995 * 119.93348 * 179.97438 * 22 21 20 36 36 H 1.08995 * 109.45941 * 178.24189 * 26 14 13 37 37 H 1.09003 * 109.44927 * 58.26923 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0789 -1.1973 0.1101 9 6 1.2588 -2.4947 -0.1520 10 1 0.4041 -2.3489 -0.8125 11 6 0.7708 -2.9681 1.2199 12 6 0.0670 -4.3189 1.0644 13 6 1.0339 -5.3227 0.4323 14 7 1.4712 -4.8246 -0.8781 15 6 2.2911 -5.8247 -1.5746 16 1 2.6161 -5.4235 -2.5346 17 9 1.5351 -6.9829 -1.7852 18 8 3.4351 -6.1408 -0.7787 19 6 4.4400 -6.8200 -1.3868 20 6 5.5320 -7.2592 -0.6460 21 7 6.5082 -7.9201 -1.2398 22 6 6.4492 -8.1646 -2.5376 23 6 5.3647 -7.7282 -3.2780 24 17 5.2910 -8.0519 -4.9819 25 7 4.3807 -7.0699 -2.6869 26 6 2.1912 -3.5513 -0.7488 27 1 -0.4850 -0.8370 -0.0717 28 1 1.6221 -3.0762 1.8921 29 1 0.0723 -2.2385 1.6298 30 1 -0.8069 -4.2024 0.4234 31 1 -0.2458 -4.6820 2.0435 32 1 0.5313 -6.2818 0.3071 33 1 1.9010 -5.4491 1.0806 34 1 5.5809 -7.0603 0.4144 35 1 7.2494 -8.7052 -3.0211 36 1 2.5292 -3.2239 -1.7319 37 1 3.0528 -3.6864 -0.0949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165076786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:14 Heat of formation + Delta-G solvation = -47.115257 kcal Electronic energy + Delta-G solvation = -24209.306211 eV Core-core repulsion = 20348.221401 eV Total energy + Delta-G solvation = -3861.084810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.78489 -41.67270 -39.12876 -37.80863 -37.18924 -34.52568 -33.80817 -31.95614 -30.90586 -29.86775 -26.35768 -24.88223 -24.69338 -24.24402 -22.35687 -21.61984 -19.61631 -18.81872 -18.56155 -17.37783 -17.30118 -16.84258 -16.30270 -16.05864 -15.66826 -14.86678 -14.37059 -14.02456 -13.75217 -13.55746 -13.52739 -13.23192 -13.21726 -12.72988 -12.59507 -12.44492 -12.24424 -11.84962 -11.78497 -11.57590 -11.33933 -11.07267 -10.84230 -10.38302 -10.29252 -10.12895 -9.89334 -9.73040 -9.51480 -9.17718 -8.64133 -8.51947 -8.28843 -6.42030 -4.13359 0.20556 0.56491 1.17728 2.32337 3.09668 3.40284 3.41841 3.56453 3.60694 3.73776 3.90273 3.91110 4.48971 4.59914 4.65167 4.85496 4.96623 5.25035 5.36948 5.43806 5.51570 5.76728 5.89793 5.99888 6.16420 6.29817 6.38011 6.50216 6.52956 6.57557 6.75595 6.82257 7.08372 7.12768 7.18029 7.38180 7.55540 8.15697 8.37186 8.81307 9.59232 10.97909 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.003451 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.460170 B = 8110.939090 C = 8726.789058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.598 4.598 8 H 0.048 0.952 9 C 0.040 3.960 10 H 0.041 0.959 11 C -0.112 4.112 12 C -0.119 4.119 13 C 0.052 3.948 14 N -0.514 5.514 15 C 0.408 3.592 16 H 0.123 0.877 17 F -0.193 7.193 18 O -0.331 6.331 19 C 0.313 3.687 20 C 0.049 3.951 21 N -0.386 5.386 22 C 0.026 3.974 23 C 0.170 3.830 24 Cl -0.008 7.008 25 N -0.494 5.494 26 C 0.069 3.931 27 H 0.272 0.728 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.188 0.812 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -16.747 -4.351 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.067 0.933 9 C 0.021 3.979 10 H 0.059 0.941 11 C -0.151 4.151 12 C -0.157 4.157 13 C -0.075 4.075 14 N -0.245 5.245 15 C 0.246 3.754 16 H 0.140 0.860 17 F -0.175 7.175 18 O -0.236 6.236 19 C 0.129 3.871 20 C -0.115 4.115 21 N -0.101 5.101 22 C -0.133 4.133 23 C 0.004 3.996 24 Cl 0.021 6.979 25 N -0.225 5.225 26 C -0.057 4.057 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.204 0.796 35 H 0.200 0.800 36 H 0.088 0.912 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.525 -14.977 -4.458 18.301 hybrid contribution 0.592 -1.939 -0.053 2.028 sum 10.116 -16.917 -4.510 20.220 Atomic orbital electron populations 1.70793 1.06824 1.31341 1.45332 1.25785 0.96472 1.02475 0.93371 0.83579 0.74960 0.75469 0.76537 1.20755 1.21489 1.21424 1.21829 0.94776 0.91384 1.55700 0.93322 1.18881 0.94996 0.92033 0.92039 0.94060 1.21834 0.98889 0.93698 1.00634 1.21695 0.98321 0.96524 0.99118 1.22097 0.98675 0.98454 0.88265 1.63356 1.34958 1.03090 1.23089 1.23786 0.76435 0.79724 0.95415 0.85973 1.92912 1.77108 1.52222 1.95238 1.86625 1.26420 1.68082 1.42491 1.20718 0.89291 0.89984 0.87090 1.23163 0.88840 0.97192 1.02308 1.68621 1.23815 1.08304 1.09337 1.23444 0.98083 1.01586 0.90152 1.22621 0.91718 0.95973 0.89317 1.98446 1.97965 1.92838 1.08683 1.67345 1.29038 1.16029 1.10125 1.22428 0.96433 0.85832 1.01000 0.91633 0.93685 0.92190 0.91682 0.92438 0.91136 0.93750 0.79557 0.79966 0.91208 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.39 13.63 55.43 0.76 -25.63 16 2 C 0.02 0.66 5.45 -17.82 -0.10 0.57 16 3 Si 1.07 24.38 29.91 -169.99 -5.08 19.29 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.60 -15.95 8.31 -34.44 -0.29 -16.24 16 8 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 9 C 0.04 0.94 1.89 -91.69 -0.17 0.77 16 10 H 0.04 1.08 6.95 -51.93 -0.36 0.72 16 11 C -0.11 -2.42 5.19 -26.61 -0.14 -2.56 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 13 C 0.05 0.89 5.13 -3.83 -0.02 0.87 16 14 N -0.51 -9.33 4.82 -239.62 -1.16 -10.49 16 15 C 0.41 6.64 3.34 60.06 0.20 6.84 16 16 H 0.12 1.95 7.49 -51.93 -0.39 1.56 16 17 F -0.19 -3.24 16.67 2.25 0.04 -3.21 16 18 O -0.33 -5.02 8.90 -18.74 -0.17 -5.19 16 19 C 0.31 4.20 7.44 -16.94 -0.13 4.07 16 20 C 0.05 0.54 11.18 -17.17 -0.19 0.35 16 21 N -0.39 -4.13 10.49 -12.90 -0.14 -4.26 16 22 C 0.03 0.25 11.00 -17.34 -0.19 0.06 16 23 C 0.17 1.88 7.28 -17.29 -0.13 1.75 16 24 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 16 25 N -0.49 -6.67 9.09 -10.24 -0.09 -6.76 16 26 C 0.07 1.40 4.53 -3.83 -0.02 1.38 16 27 H 0.27 7.86 6.33 -40.82 -0.26 7.60 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.41 7.74 -51.93 -0.40 1.01 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.12 7.55 -51.93 -0.39 0.73 16 33 H 0.04 0.74 7.72 -51.93 -0.40 0.34 16 34 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -29.29 328.86 -8.08 -37.36 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.35 Total: -0.06 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.33 Total: -4.43 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.63 Total: -47.15 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.17 Total: -5.19 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.29 -8.08 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165076786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.751 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds