Wall clock time and date at job start Tue Mar 31 2020 11:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00306 * 2 1 4 4 H 1.48499 * 109.46868 * 240.00216 * 3 2 1 5 5 H 1.48494 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47159 * 120.00337 * 3 2 1 7 7 C 1.37885 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99392 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00048 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50278 * 299.91831 * 9 7 2 11 11 C 1.53116 * 109.50339 * 59.99981 * 9 7 2 12 12 C 1.53122 * 109.16068 * 177.59777 * 11 9 7 13 13 C 1.53042 * 109.27662 * 302.34587 * 12 11 9 14 14 N 1.46850 * 109.52333 * 59.17786 * 13 12 11 15 15 C 1.46906 * 110.99790 * 174.16398 * 14 13 12 16 16 H 1.08992 * 109.46774 * 179.86058 * 15 14 13 17 17 F 1.39901 * 109.47039 * 59.86160 * 15 14 13 18 18 O 1.42902 * 109.46649 * 299.86150 * 15 14 13 19 19 C 1.35679 * 116.99547 * 194.98465 * 18 15 14 20 20 C 1.39078 * 120.06206 * 174.97269 * 19 18 15 21 21 N 1.31988 * 119.95008 * 180.02562 * 20 19 18 22 22 C 1.32209 * 120.08088 * 359.97438 * 21 20 19 23 23 C 1.38367 * 120.12759 * 0.02562 * 22 21 20 24 24 Cl 1.73596 * 119.97728 * 180.02562 * 23 22 21 25 25 N 1.32331 * 120.04928 * 359.97438 * 23 22 21 26 26 C 1.46846 * 111.19784 * 298.25977 * 14 13 12 27 27 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.52501 * 57.69216 * 11 9 7 29 29 H 1.09003 * 109.52474 * 297.49655 * 11 9 7 30 30 H 1.08997 * 109.50376 * 182.40505 * 12 11 9 31 31 H 1.09005 * 109.53859 * 62.30171 * 12 11 9 32 32 H 1.09006 * 109.46164 * 299.16279 * 13 12 11 33 33 H 1.08995 * 109.46338 * 179.19754 * 13 12 11 34 34 H 1.08002 * 120.02410 * 0.04496 * 20 19 18 35 35 H 1.07997 * 119.93350 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.46419 * 181.76004 * 26 14 13 37 37 H 1.09006 * 109.46463 * 301.72716 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6254 -2.5583 0.8903 11 6 0.3698 -2.5807 -1.2501 12 6 -0.3460 -3.9341 -1.2729 13 6 0.6941 -5.0564 -1.2416 14 7 1.5108 -4.9348 -0.0273 15 6 2.4284 -6.0743 0.1063 16 1 3.0229 -5.9577 1.0123 17 9 3.2767 -6.1226 -1.0051 18 8 1.6748 -7.2860 0.1835 19 6 2.3297 -8.3919 0.6182 20 6 1.6346 -9.5798 0.8178 21 7 2.2737 -10.6542 1.2413 22 6 3.5739 -10.6025 1.4755 23 6 4.2687 -9.4223 1.2780 24 17 5.9759 -9.3589 1.5861 25 7 3.6330 -8.3421 0.8536 26 6 2.2446 -3.6630 -0.0061 27 1 -0.4850 0.8400 0.0004 28 1 0.9906 -2.4820 -2.1406 29 1 -0.3681 -1.7788 -1.2286 30 1 -0.9418 -4.0154 -2.1820 31 1 -0.9970 -4.0170 -0.4025 32 1 1.3355 -4.9817 -2.1198 33 1 0.1873 -6.0214 -1.2433 34 1 0.5726 -9.6233 0.6261 35 1 4.0944 -11.4828 1.8223 36 1 2.8640 -3.6159 0.8895 37 1 2.8788 -3.5948 -0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165076788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:18 Heat of formation + Delta-G solvation = -39.048870 kcal Electronic energy + Delta-G solvation = -24017.496091 eV Core-core repulsion = 20156.761065 eV Total energy + Delta-G solvation = -3860.735026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.70861 -41.68815 -38.82907 -37.79874 -37.19731 -34.52917 -33.54885 -31.72002 -30.96145 -29.97937 -26.38388 -25.09901 -24.84185 -24.16836 -22.12176 -21.48939 -19.12815 -18.74027 -18.58334 -17.32049 -17.19877 -16.81250 -16.13730 -15.81947 -15.65328 -14.75385 -14.59782 -14.10768 -13.99038 -13.54264 -13.28758 -12.96756 -12.79189 -12.61419 -12.50216 -12.43546 -12.23918 -11.95172 -11.79580 -11.28782 -11.08862 -10.97167 -10.79448 -10.76101 -10.21319 -9.94570 -9.84906 -9.61659 -9.26567 -9.17676 -8.84750 -8.45225 -8.26923 -6.04021 -4.10929 0.18802 0.54882 1.17713 2.17741 3.07804 3.29715 3.34524 3.36969 3.54479 3.80580 3.88700 4.12460 4.41028 4.51184 4.65157 4.84457 5.16342 5.26291 5.38369 5.52851 5.71015 5.90504 6.08848 6.18755 6.33286 6.35310 6.54411 6.58588 6.62667 6.75046 7.03319 7.11253 7.13554 7.35999 7.46555 7.68890 7.95217 8.06994 8.36615 8.91807 9.53809 11.02025 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.003111 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.331476 B = 8999.452966 C = 9914.007890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.059 3.941 10 H 0.038 0.962 11 C -0.114 4.114 12 C -0.116 4.116 13 C 0.056 3.944 14 N -0.532 5.532 15 C 0.412 3.588 16 H 0.118 0.882 17 F -0.221 7.221 18 O -0.293 6.293 19 C 0.311 3.689 20 C 0.052 3.948 21 N -0.386 5.386 22 C 0.027 3.973 23 C 0.170 3.830 24 Cl -0.007 7.007 25 N -0.492 5.492 26 C 0.066 3.934 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.190 0.810 35 H 0.184 0.816 36 H 0.067 0.933 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -20.230 1.889 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.041 3.959 10 H 0.056 0.944 11 C -0.152 4.152 12 C -0.153 4.153 13 C -0.071 4.071 14 N -0.262 5.262 15 C 0.250 3.750 16 H 0.136 0.864 17 F -0.204 7.204 18 O -0.199 6.199 19 C 0.127 3.873 20 C -0.112 4.112 21 N -0.100 5.100 22 C -0.133 4.133 23 C 0.003 3.997 24 Cl 0.021 6.979 25 N -0.224 5.224 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.207 0.793 35 H 0.201 0.799 36 H 0.085 0.915 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.409 -20.023 2.200 20.621 hybrid contribution 1.515 1.119 -0.757 2.029 sum 5.924 -18.904 1.443 19.863 Atomic orbital electron populations 1.69869 1.05861 1.26644 1.50165 1.24920 0.94858 0.99017 0.94890 0.86641 0.79594 0.83029 0.78643 1.20296 1.21260 1.20231 1.21047 0.92879 0.90350 1.51457 0.92678 1.18671 0.92354 0.89647 0.95275 0.94390 1.21709 1.00185 0.94845 0.98469 1.21687 0.96958 0.95939 1.00755 1.22100 0.95587 0.99952 0.89481 1.62684 1.21983 1.00972 1.40575 1.23580 0.82621 0.81063 0.87772 0.86441 1.92968 1.72941 1.96020 1.58424 1.86359 1.38296 1.16570 1.78698 1.20791 0.86910 0.88632 0.90963 1.23117 1.02450 0.85892 0.99725 1.68640 1.07934 1.26881 1.06574 1.23449 0.90651 0.97609 1.01542 1.22636 0.89332 0.90541 0.97151 1.98449 1.08057 1.98351 1.93015 1.67427 1.08613 1.31121 1.15208 1.22511 0.97127 0.86220 1.00098 0.92855 0.94807 0.88667 0.92894 0.91782 0.94530 0.91268 0.79327 0.79946 0.91489 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 11.35 55.43 0.63 -24.04 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.86 8.56 -34.44 -0.29 -14.15 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.06 1.44 2.26 -91.70 -0.21 1.23 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.06 1.00 5.15 -3.83 -0.02 0.98 16 14 N -0.53 -9.89 4.81 -239.61 -1.15 -11.04 16 15 C 0.41 6.80 3.26 60.07 0.20 7.00 16 16 H 0.12 1.87 7.64 -51.93 -0.40 1.47 16 17 F -0.22 -3.97 16.27 2.25 0.04 -3.93 16 18 O -0.29 -4.31 9.31 -18.74 -0.17 -4.48 16 19 C 0.31 3.97 7.44 -16.94 -0.13 3.84 16 20 C 0.05 0.53 11.18 -17.17 -0.19 0.34 16 21 N -0.39 -3.82 10.49 -12.90 -0.14 -3.95 16 22 C 0.03 0.23 11.00 -17.34 -0.19 0.04 16 23 C 0.17 1.81 7.28 -17.29 -0.13 1.69 16 24 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 16 25 N -0.49 -6.51 9.08 -10.24 -0.09 -6.61 16 26 C 0.07 1.37 4.52 -3.84 -0.02 1.35 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.44 6.15 -51.93 -0.32 2.12 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 33 H 0.07 1.11 7.39 -51.93 -0.38 0.73 16 34 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 37 H 0.04 0.79 7.95 -51.93 -0.41 0.37 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -28.68 328.18 -8.26 -36.94 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.42 Total: -0.99 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.37 Total: -1.13 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.75 Total: -45.64 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.17 Total: -4.48 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.68 -8.26 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165076788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.111 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds