Wall clock time and date at job start Tue Mar 31 2020 11:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00306 * 2 1 4 4 H 1.48499 * 109.46868 * 240.00216 * 3 2 1 5 5 H 1.48494 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47159 * 120.00337 * 3 2 1 7 7 C 1.37885 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99392 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00048 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.50278 * 299.91831 * 9 7 2 11 11 C 1.53116 * 109.50339 * 59.99981 * 9 7 2 12 12 C 1.53122 * 109.16068 * 177.59777 * 11 9 7 13 13 C 1.53042 * 109.27662 * 302.34587 * 12 11 9 14 14 N 1.46850 * 109.52333 * 59.17786 * 13 12 11 15 15 C 1.46906 * 110.99790 * 174.16398 * 14 13 12 16 16 H 1.08992 * 109.46774 * 179.86058 * 15 14 13 17 17 F 1.39901 * 109.47039 * 59.86160 * 15 14 13 18 18 O 1.42902 * 109.46649 * 299.86150 * 15 14 13 19 19 C 1.35679 * 116.99547 * 194.98465 * 18 15 14 20 20 C 1.39078 * 120.06206 * 174.97269 * 19 18 15 21 21 N 1.31988 * 119.95008 * 180.02562 * 20 19 18 22 22 C 1.32209 * 120.08088 * 359.97438 * 21 20 19 23 23 C 1.38367 * 120.12759 * 0.02562 * 22 21 20 24 24 Cl 1.73596 * 119.97728 * 180.02562 * 23 22 21 25 25 N 1.32331 * 120.04928 * 359.97438 * 23 22 21 26 26 C 1.46846 * 111.19784 * 298.25977 * 14 13 12 27 27 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.52501 * 57.69216 * 11 9 7 29 29 H 1.09003 * 109.52474 * 297.49655 * 11 9 7 30 30 H 1.08997 * 109.50376 * 182.40505 * 12 11 9 31 31 H 1.09005 * 109.53859 * 62.30171 * 12 11 9 32 32 H 1.09006 * 109.46164 * 299.16279 * 13 12 11 33 33 H 1.08995 * 109.46338 * 179.19754 * 13 12 11 34 34 H 1.08002 * 120.02410 * 0.04496 * 20 19 18 35 35 H 1.07997 * 119.93350 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.46419 * 181.76004 * 26 14 13 37 37 H 1.09006 * 109.46463 * 301.72716 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6254 -2.5583 0.8903 11 6 0.3698 -2.5807 -1.2501 12 6 -0.3460 -3.9341 -1.2729 13 6 0.6941 -5.0564 -1.2416 14 7 1.5108 -4.9348 -0.0273 15 6 2.4284 -6.0743 0.1063 16 1 3.0229 -5.9577 1.0123 17 9 3.2767 -6.1226 -1.0051 18 8 1.6748 -7.2860 0.1835 19 6 2.3297 -8.3919 0.6182 20 6 1.6346 -9.5798 0.8178 21 7 2.2737 -10.6542 1.2413 22 6 3.5739 -10.6025 1.4755 23 6 4.2687 -9.4223 1.2780 24 17 5.9759 -9.3589 1.5861 25 7 3.6330 -8.3421 0.8536 26 6 2.2446 -3.6630 -0.0061 27 1 -0.4850 0.8400 0.0004 28 1 0.9906 -2.4820 -2.1406 29 1 -0.3681 -1.7788 -1.2286 30 1 -0.9418 -4.0154 -2.1820 31 1 -0.9970 -4.0170 -0.4025 32 1 1.3355 -4.9817 -2.1198 33 1 0.1873 -6.0214 -1.2433 34 1 0.5726 -9.6233 0.6261 35 1 4.0944 -11.4828 1.8223 36 1 2.8640 -3.6159 0.8895 37 1 2.8788 -3.5948 -0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165076788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:17 Heat of formation + Delta-G solvation = -59.792026 kcal Electronic energy + Delta-G solvation = -24018.395581 eV Core-core repulsion = 20156.761065 eV Total energy + Delta-G solvation = -3861.634516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.06293 -42.53582 -40.05111 -39.21441 -37.96083 -35.52652 -35.26111 -33.32953 -31.98897 -31.68706 -27.57400 -27.01161 -25.79613 -25.21785 -23.69378 -23.09290 -20.49537 -20.15892 -19.57969 -18.60766 -18.35562 -18.03268 -17.48101 -17.01285 -16.67029 -16.49619 -15.89065 -15.58737 -15.52717 -14.75271 -14.53679 -14.42904 -14.18687 -14.14991 -13.95972 -13.53411 -13.36987 -13.10872 -12.87417 -12.76597 -12.63595 -12.59545 -12.42810 -11.98654 -11.92456 -11.81128 -11.47763 -11.03560 -10.76670 -10.67615 -10.41430 -10.01049 -9.88300 -8.09869 -6.23940 -0.60089 -0.28951 0.41115 1.07220 1.43388 1.43896 1.51641 2.27366 2.41510 2.57902 2.79880 3.08488 3.11948 3.17935 3.30443 3.77382 3.85568 4.00635 4.18616 4.20257 4.30302 4.48464 4.56996 4.65663 4.79375 4.83845 4.99549 4.99841 5.25106 5.34060 5.42220 5.61620 5.71747 5.81065 5.85761 5.98865 6.11420 6.30781 6.36045 6.85954 7.43914 8.94831 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.003111 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.331476 B = 8999.452966 C = 9914.007890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.058 3.942 10 H 0.007 0.993 11 C -0.108 4.108 12 C -0.107 4.107 13 C 0.061 3.939 14 N -0.538 5.538 15 C 0.420 3.580 16 H 0.122 0.878 17 F -0.230 7.230 18 O -0.297 6.297 19 C 0.283 3.717 20 C 0.066 3.934 21 N -0.392 5.392 22 C 0.048 3.952 23 C 0.154 3.846 24 Cl 0.000 7.000 25 N -0.517 5.517 26 C 0.080 3.920 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.215 0.785 35 H 0.219 0.781 36 H 0.070 0.930 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -22.124 1.995 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.025 0.975 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.066 4.066 14 N -0.268 5.268 15 C 0.257 3.743 16 H 0.139 0.861 17 F -0.213 7.213 18 O -0.204 6.204 19 C 0.100 3.900 20 C -0.096 4.096 21 N -0.107 5.107 22 C -0.111 4.111 23 C -0.012 4.012 24 Cl 0.029 6.971 25 N -0.249 5.249 26 C -0.046 4.046 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.861 -21.947 2.309 22.597 hybrid contribution 1.418 1.572 -0.737 2.242 sum 6.279 -20.375 1.572 21.378 Atomic orbital electron populations 1.70002 1.07070 1.27304 1.50718 1.25669 0.95669 1.02191 0.94594 0.85676 0.78431 0.79142 0.78785 1.19827 1.20884 1.19642 1.21420 0.93070 0.91851 1.51502 0.92883 1.18567 0.92684 0.90418 0.94444 0.97494 1.21524 0.99317 0.96437 0.97323 1.21580 0.97084 0.93952 1.01814 1.22091 0.95101 1.00482 0.88958 1.62559 1.22325 1.00839 1.41075 1.23317 0.82124 0.81375 0.87451 0.86140 1.92948 1.73228 1.96156 1.58940 1.86308 1.38089 1.16342 1.79643 1.21037 0.87232 0.88667 0.93035 1.23516 1.03421 0.84727 0.97958 1.68790 1.08393 1.26457 1.07034 1.24035 0.90274 0.97892 0.98888 1.22899 0.89814 0.90643 0.97810 1.98450 1.07404 1.98330 1.92962 1.67302 1.09219 1.32680 1.15684 1.22147 0.96080 0.86557 0.99864 0.92898 0.95719 0.91601 0.90399 0.92239 0.94979 0.88759 0.76833 0.76425 0.91169 0.95319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.88 11.35 21.45 0.24 -51.63 16 2 C 0.02 0.99 5.30 84.66 0.45 1.44 16 3 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.48 8.56 25.60 0.22 -29.26 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.06 2.88 2.26 -11.49 -0.03 2.85 16 10 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 11 C -0.11 -5.06 5.02 30.67 0.15 -4.91 16 12 C -0.11 -3.98 6.09 30.65 0.19 -3.80 16 13 C 0.06 2.09 5.15 86.33 0.44 2.53 16 14 N -0.54 -19.79 4.81 ******* -4.86 -24.66 16 15 C 0.42 13.59 3.26 127.69 0.42 14.01 16 16 H 0.12 3.80 7.64 -2.39 -0.02 3.78 16 17 F -0.23 -8.13 16.27 44.97 0.73 -7.40 16 18 O -0.30 -8.33 9.31 -89.97 -0.84 -9.17 16 19 C 0.28 6.81 7.44 84.79 0.63 7.44 16 20 C 0.07 1.19 11.18 84.87 0.95 2.13 16 21 N -0.39 -6.63 10.49 -194.71 -2.04 -8.67 16 22 C 0.05 0.71 11.00 84.67 0.93 1.64 16 23 C 0.15 3.02 7.28 84.65 0.62 3.64 16 24 Cl 0.00 0.00 29.13 -2.72 -0.08 -0.08 16 25 N -0.52 -13.08 9.08 -299.04 -2.72 -15.80 16 26 C 0.08 3.36 4.52 86.33 0.39 3.75 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 3.48 6.15 -2.39 -0.01 3.46 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.03 1.14 7.85 -2.38 -0.02 1.12 16 33 H 0.09 2.81 7.39 -2.39 -0.02 2.80 16 34 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.07 2.87 8.08 -2.39 -0.02 2.85 16 37 H 0.03 1.24 7.95 -2.38 -0.02 1.23 16 Total: -1.00 -62.41 328.18 -1.08 -63.49 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.10 Total: 7.25 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.36 Total: 1.48 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -9.38 Total: -100.76 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.84 Total: -9.17 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.73 Total: -7.40 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -62.41 -1.08 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165076788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.695 kcal (2) G-P(sol) polarization free energy of solvation -62.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds