Wall clock time and date at job start Tue Mar 31 2020 11:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00362 * 2 1 4 4 H 1.48496 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47159 * 300.00431 * 3 2 1 6 6 H 1.48503 * 109.46998 * 60.00146 * 3 2 1 7 7 C 1.37880 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00064 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50008 * 299.92328 * 9 7 2 11 11 C 1.53123 * 109.50413 * 59.99457 * 9 7 2 12 12 C 1.53111 * 109.16308 * 177.59455 * 11 9 7 13 13 C 1.53034 * 109.27946 * 302.34907 * 12 11 9 14 14 N 1.46845 * 109.52381 * 59.18058 * 13 12 11 15 15 C 1.46901 * 111.00379 * 174.16396 * 14 13 12 16 16 H 1.08994 * 109.47733 * 179.66782 * 15 14 13 17 17 F 1.39906 * 109.46678 * 299.66582 * 15 14 13 18 18 O 1.42894 * 109.47427 * 59.65992 * 15 14 13 19 19 C 1.35713 * 117.00504 * 163.70885 * 18 15 14 20 20 C 1.39289 * 120.12766 * 176.57701 * 19 18 15 21 21 C 1.38593 * 117.92933 * 180.02562 * 20 19 18 22 22 C 1.38912 * 118.00823 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.02725 * 179.97438 * 22 21 20 24 24 N 1.31889 * 119.94147 * 0.02562 * 22 21 20 25 25 N 1.28348 * 122.24533 * 359.70265 * 24 22 21 26 26 C 1.46858 * 111.19727 * 298.25436 * 14 13 12 27 27 H 0.97007 * 119.99651 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.51814 * 57.69019 * 11 9 7 29 29 H 1.08998 * 109.52135 * 297.50439 * 11 9 7 30 30 H 1.08993 * 109.50935 * 182.40405 * 12 11 9 31 31 H 1.09010 * 109.53303 * 62.30861 * 12 11 9 32 32 H 1.08997 * 109.46525 * 299.15985 * 13 12 11 33 33 H 1.08998 * 109.46360 * 179.18886 * 13 12 11 34 34 H 1.07993 * 121.03403 * 0.03079 * 20 19 18 35 35 H 1.08004 * 121.00082 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46228 * 181.75657 * 26 14 13 37 37 H 1.09002 * 109.45820 * 301.72931 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3707 -2.5813 -1.2497 12 6 -0.3449 -3.9347 -1.2725 13 6 0.6951 -5.0568 -1.2400 14 7 1.5109 -4.9348 -0.0251 15 6 2.4285 -6.0741 0.1097 16 1 3.0247 -5.9555 1.0143 17 9 1.6906 -7.2600 0.1896 18 8 3.2928 -6.1267 -1.0270 19 6 4.4094 -6.8903 -0.9173 20 6 5.2604 -7.0453 -2.0090 21 6 6.3873 -7.8355 -1.8465 22 6 6.5986 -8.4232 -0.6057 23 17 7.9930 -9.4237 -0.3444 24 7 5.7383 -8.2213 0.3734 25 7 4.6962 -7.4861 0.2286 26 6 2.2448 -3.6629 -0.0038 27 1 -0.4850 0.8401 0.0004 28 1 0.9922 -2.4828 -2.1397 29 1 -0.3671 -1.7793 -1.2290 30 1 -0.9401 -4.0164 -2.1819 31 1 -0.9965 -4.0171 -0.4025 32 1 1.3372 -4.9825 -2.1176 33 1 0.1884 -6.0218 -1.2416 34 1 5.0487 -6.5647 -2.9526 35 1 7.0810 -7.9891 -2.6599 36 1 2.8635 -3.6155 0.8923 37 1 2.8796 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165077604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:41 Heat of formation + Delta-G solvation = -31.535890 kcal Electronic energy + Delta-G solvation = -24064.594642 eV Core-core repulsion = 20204.185404 eV Total energy + Delta-G solvation = -3860.409238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.71057 -41.57386 -39.06583 -37.70682 -37.10456 -33.81097 -33.53553 -31.95241 -31.21296 -30.02186 -26.26477 -25.08905 -24.92364 -24.24750 -22.17601 -21.47694 -19.57256 -18.53678 -18.25752 -17.58916 -17.16979 -16.74232 -15.94175 -15.69266 -15.23914 -14.64159 -14.54127 -14.10587 -14.03273 -13.75539 -13.42383 -13.15292 -12.88281 -12.62540 -12.50606 -12.15266 -12.08683 -11.95948 -11.83874 -11.31271 -11.02928 -10.83868 -10.74291 -10.71889 -10.22512 -10.03799 -9.97066 -9.65874 -9.44245 -9.26955 -8.86314 -8.50762 -8.31773 -6.06312 -4.13189 0.24444 0.41797 1.22930 2.39577 2.99753 3.25253 3.33775 3.36723 3.58545 3.83000 3.96047 4.28457 4.33465 4.39647 4.60726 4.91245 5.05269 5.24189 5.25887 5.36291 5.46735 5.64259 5.91488 6.05269 6.15641 6.31778 6.50195 6.58895 6.65068 6.67565 6.98465 7.05722 7.27961 7.41846 7.66847 7.92764 8.04723 8.09930 8.34085 8.90002 9.51829 10.99831 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.003174 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.186202 B = 8820.266211 C = 9811.141487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.056 3.944 10 H 0.038 0.962 11 C -0.114 4.114 12 C -0.117 4.117 13 C 0.051 3.949 14 N -0.510 5.510 15 C 0.405 3.595 16 H 0.125 0.875 17 F -0.193 7.193 18 O -0.332 6.332 19 C 0.283 3.717 20 C -0.116 4.116 21 C -0.072 4.072 22 C 0.078 3.922 23 Cl -0.006 7.006 24 N -0.187 5.187 25 N -0.278 5.278 26 C 0.062 3.938 27 H 0.261 0.739 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -15.772 -5.688 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.037 3.963 10 H 0.056 0.944 11 C -0.152 4.152 12 C -0.155 4.155 13 C -0.076 4.076 14 N -0.242 5.242 15 C 0.244 3.756 16 H 0.143 0.857 17 F -0.174 7.174 18 O -0.236 6.236 19 C 0.096 3.904 20 C -0.146 4.146 21 C -0.100 4.100 22 C -0.096 4.096 23 Cl 0.021 6.979 24 N -0.033 5.033 25 N -0.135 5.135 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.187 0.813 35 H 0.185 0.815 36 H 0.085 0.915 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.820 -15.855 -3.925 19.059 hybrid contribution 1.384 0.921 -1.965 2.574 sum 11.204 -14.935 -5.890 19.577 Atomic orbital electron populations 1.69889 1.05865 1.26435 1.50287 1.24925 0.94851 0.99049 0.94914 0.86538 0.80090 0.83745 0.77626 1.19827 1.21024 1.20953 1.21101 0.92885 0.90326 1.51242 0.92627 1.18699 0.92419 0.89859 0.95280 0.94384 1.21708 1.00190 0.94808 0.98459 1.21698 0.96986 0.95919 1.00872 1.22138 0.95721 1.00076 0.89646 1.63346 1.19521 1.02226 1.39059 1.23891 0.83061 0.79846 0.88826 0.85747 1.92914 1.78954 1.49281 1.96243 1.86602 1.29874 1.61435 1.45686 1.21446 0.87763 0.89381 0.91766 1.21712 0.93234 0.99587 1.00090 1.22120 0.97018 0.93828 0.97082 1.23328 0.94088 0.98954 0.93190 1.98422 1.35895 1.66507 1.97031 1.72689 0.96997 1.07660 1.25931 1.73221 1.11880 1.08525 1.19895 1.22486 0.97129 0.86539 1.00175 0.92951 0.94783 0.88655 0.92803 0.91768 0.93985 0.91366 0.81344 0.81459 0.91461 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 11.35 55.43 0.63 -23.83 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.59 8.56 -34.44 -0.29 -13.88 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.34 2.26 -91.69 -0.21 1.14 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 12 C -0.12 -2.19 6.09 -26.66 -0.16 -2.35 16 13 C 0.05 0.90 5.14 -3.84 -0.02 0.88 16 14 N -0.51 -9.39 4.83 -239.62 -1.16 -10.54 16 15 C 0.40 6.67 3.37 60.07 0.20 6.88 16 16 H 0.13 1.99 7.43 -51.93 -0.39 1.60 16 17 F -0.19 -3.28 16.67 2.25 0.04 -3.24 16 18 O -0.33 -5.09 8.91 -18.84 -0.17 -5.26 16 19 C 0.28 3.83 7.55 -16.96 -0.13 3.70 16 20 C -0.12 -1.12 10.15 -39.06 -0.40 -1.52 16 21 C -0.07 -0.58 9.99 -39.20 -0.39 -0.97 16 22 C 0.08 0.82 7.37 -17.28 -0.13 0.70 16 23 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 24 N -0.19 -2.56 11.48 32.89 0.38 -2.19 16 25 N -0.28 -4.11 10.07 30.50 0.31 -3.80 16 26 C 0.06 1.26 4.48 -3.83 -0.02 1.25 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.41 6.15 -51.93 -0.32 2.09 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.04 0.73 7.74 -51.93 -0.40 0.32 16 33 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 34 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 37 H 0.04 0.79 7.85 -51.93 -0.41 0.38 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -28.70 328.10 -7.73 -36.44 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.40 Total: -1.30 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.77 Total: -5.27 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.16 Total: -40.36 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.17 Total: -5.26 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.70 -7.73 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165077604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.900 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds