Wall clock time and date at job start Tue Mar 31 2020 11:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00362 * 2 1 4 4 H 1.48496 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47159 * 300.00431 * 3 2 1 6 6 H 1.48503 * 109.46998 * 60.00146 * 3 2 1 7 7 C 1.37880 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00064 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50008 * 299.92328 * 9 7 2 11 11 C 1.53123 * 109.50413 * 59.99457 * 9 7 2 12 12 C 1.53111 * 109.16308 * 177.59455 * 11 9 7 13 13 C 1.53034 * 109.27946 * 302.34907 * 12 11 9 14 14 N 1.46845 * 109.52381 * 59.18058 * 13 12 11 15 15 C 1.46901 * 111.00379 * 174.16396 * 14 13 12 16 16 H 1.08994 * 109.47733 * 179.66782 * 15 14 13 17 17 F 1.39906 * 109.46678 * 299.66582 * 15 14 13 18 18 O 1.42894 * 109.47427 * 59.65992 * 15 14 13 19 19 C 1.35713 * 117.00504 * 163.70885 * 18 15 14 20 20 C 1.39289 * 120.12766 * 176.57701 * 19 18 15 21 21 C 1.38593 * 117.92933 * 180.02562 * 20 19 18 22 22 C 1.38912 * 118.00823 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.02725 * 179.97438 * 22 21 20 24 24 N 1.31889 * 119.94147 * 0.02562 * 22 21 20 25 25 N 1.28348 * 122.24533 * 359.70265 * 24 22 21 26 26 C 1.46858 * 111.19727 * 298.25436 * 14 13 12 27 27 H 0.97007 * 119.99651 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.51814 * 57.69019 * 11 9 7 29 29 H 1.08998 * 109.52135 * 297.50439 * 11 9 7 30 30 H 1.08993 * 109.50935 * 182.40405 * 12 11 9 31 31 H 1.09010 * 109.53303 * 62.30861 * 12 11 9 32 32 H 1.08997 * 109.46525 * 299.15985 * 13 12 11 33 33 H 1.08998 * 109.46360 * 179.18886 * 13 12 11 34 34 H 1.07993 * 121.03403 * 0.03079 * 20 19 18 35 35 H 1.08004 * 121.00082 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46228 * 181.75657 * 26 14 13 37 37 H 1.09002 * 109.45820 * 301.72931 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3707 -2.5813 -1.2497 12 6 -0.3449 -3.9347 -1.2725 13 6 0.6951 -5.0568 -1.2400 14 7 1.5109 -4.9348 -0.0251 15 6 2.4285 -6.0741 0.1097 16 1 3.0247 -5.9555 1.0143 17 9 1.6906 -7.2600 0.1896 18 8 3.2928 -6.1267 -1.0270 19 6 4.4094 -6.8903 -0.9173 20 6 5.2604 -7.0453 -2.0090 21 6 6.3873 -7.8355 -1.8465 22 6 6.5986 -8.4232 -0.6057 23 17 7.9930 -9.4237 -0.3444 24 7 5.7383 -8.2213 0.3734 25 7 4.6962 -7.4861 0.2286 26 6 2.2448 -3.6629 -0.0038 27 1 -0.4850 0.8401 0.0004 28 1 0.9922 -2.4828 -2.1397 29 1 -0.3671 -1.7793 -1.2290 30 1 -0.9401 -4.0164 -2.1819 31 1 -0.9965 -4.0171 -0.4025 32 1 1.3372 -4.9825 -2.1176 33 1 0.1884 -6.0218 -1.2416 34 1 5.0487 -6.5647 -2.9526 35 1 7.0810 -7.9891 -2.6599 36 1 2.8635 -3.6155 0.8923 37 1 2.8796 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165077604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:40 Heat of formation + Delta-G solvation = -52.031624 kcal Electronic energy + Delta-G solvation = -24065.483404 eV Core-core repulsion = 20204.185404 eV Total energy + Delta-G solvation = -3861.298000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.03017 -42.47866 -40.34663 -39.05529 -37.90346 -35.45144 -34.51249 -33.41317 -32.36657 -31.79228 -27.47209 -27.00019 -25.89710 -25.27807 -23.69413 -23.08767 -20.88821 -20.00369 -19.28843 -18.60976 -18.37126 -18.18365 -17.52409 -16.81265 -16.51185 -16.30555 -15.53435 -15.50558 -15.20349 -14.79489 -14.70956 -14.58307 -14.50685 -14.19672 -14.08719 -13.56691 -13.03953 -13.00297 -12.88521 -12.79592 -12.63672 -12.54661 -12.44807 -11.90038 -11.80725 -11.48696 -11.46293 -11.03491 -10.90820 -10.73586 -10.42305 -10.38746 -9.88790 -8.09301 -6.23227 -0.52077 -0.44001 0.43875 1.32082 1.41693 1.44399 1.54692 2.12725 2.35917 2.51249 2.68770 3.13993 3.18927 3.39063 3.58560 3.66787 3.71539 3.96031 4.10076 4.17611 4.35395 4.50322 4.52242 4.58476 4.72736 4.80287 4.84829 4.98997 5.00923 5.29054 5.38882 5.54237 5.61709 5.67443 5.80248 5.99262 6.13133 6.36291 6.87566 7.20468 7.44965 8.95851 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.003174 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.186202 B = 8820.266211 C = 9811.141487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.002 0.998 11 C -0.106 4.106 12 C -0.109 4.109 13 C 0.057 3.943 14 N -0.524 5.524 15 C 0.414 3.586 16 H 0.126 0.874 17 F -0.196 7.196 18 O -0.337 6.337 19 C 0.257 3.743 20 C -0.107 4.107 21 C -0.052 4.052 22 C 0.078 3.922 23 Cl 0.010 6.990 24 N -0.224 5.224 25 N -0.310 5.310 26 C 0.080 3.920 27 H 0.261 0.739 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.199 0.801 35 H 0.215 0.785 36 H 0.066 0.934 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.681 -16.699 -7.476 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.020 0.980 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.070 4.070 14 N -0.255 5.255 15 C 0.253 3.747 16 H 0.143 0.857 17 F -0.178 7.178 18 O -0.242 6.242 19 C 0.070 3.930 20 C -0.136 4.136 21 C -0.080 4.080 22 C -0.097 4.097 23 Cl 0.038 6.962 24 N -0.069 5.069 25 N -0.166 5.166 26 C -0.046 4.046 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.216 0.784 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.735 -16.809 -5.701 21.278 hybrid contribution 0.917 1.098 -1.428 2.022 sum 12.651 -15.711 -7.130 21.395 Atomic orbital electron populations 1.70027 1.07141 1.27122 1.50985 1.25682 0.95633 1.02255 0.94695 0.85565 0.79107 0.79783 0.77539 1.19119 1.20570 1.20871 1.21455 0.93069 0.91703 1.51061 0.92727 1.18603 0.92789 0.90758 0.94332 0.97991 1.21509 0.99319 0.96114 0.97499 1.21592 0.97137 0.94208 1.01689 1.22110 0.95318 1.00074 0.89510 1.63208 1.20333 1.02010 1.39989 1.23533 0.82831 0.78922 0.89423 0.85737 1.92904 1.79162 1.49364 1.96353 1.86531 1.30632 1.62450 1.44611 1.21785 0.87971 0.90156 0.93050 1.22100 0.92451 0.99135 0.99945 1.22618 0.96713 0.91584 0.97068 1.23692 0.93804 0.98515 0.93664 1.98433 1.34698 1.65978 1.97067 1.72580 0.97785 1.08822 1.27675 1.73089 1.12896 1.09531 1.21066 1.22101 0.95982 0.86378 1.00164 0.92977 0.95073 0.91776 0.90260 0.92812 0.93347 0.89712 0.78369 0.76810 0.91529 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.64 11.35 21.45 0.24 -51.40 16 2 C 0.02 0.89 5.30 84.66 0.45 1.34 16 3 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.53 -28.58 8.56 25.60 0.22 -28.36 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.65 2.26 -11.49 -0.03 2.62 16 10 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 11 C -0.11 -4.87 5.02 30.67 0.15 -4.71 16 12 C -0.11 -4.02 6.09 30.64 0.19 -3.83 16 13 C 0.06 1.91 5.14 86.32 0.44 2.35 16 14 N -0.52 -19.15 4.83 ******* -4.88 -24.04 16 15 C 0.41 13.49 3.37 127.69 0.43 13.92 16 16 H 0.13 4.03 7.43 -2.39 -0.02 4.01 16 17 F -0.20 -6.59 16.67 44.97 0.75 -5.84 16 18 O -0.34 -9.96 8.91 -90.34 -0.80 -10.77 16 19 C 0.26 6.61 7.55 84.88 0.64 7.25 16 20 C -0.11 -1.73 10.15 22.61 0.23 -1.50 16 21 C -0.05 -0.64 9.99 22.52 0.23 -0.42 16 22 C 0.08 1.47 7.37 84.85 0.62 2.10 16 23 Cl 0.01 0.16 29.13 -2.72 -0.08 0.08 16 24 N -0.22 -5.97 11.48 -49.85 -0.57 -6.54 16 25 N -0.31 -9.04 10.07 -170.23 -1.71 -10.75 16 26 C 0.08 3.26 4.48 86.32 0.39 3.65 16 27 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 3.34 6.15 -2.39 -0.01 3.33 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.05 1.58 7.74 -2.39 -0.02 1.56 16 33 H 0.08 2.61 7.53 -2.39 -0.02 2.59 16 34 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.22 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16 37 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 Total: -1.00 -64.02 328.10 0.02 -64.00 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.10 Total: 6.24 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 3.96 Total: -5.58 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -6.93 Total: -92.73 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.80 Total: -10.77 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.75 Total: -5.84 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -0.08 Total: 0.08 kcal Total: -64.02 0.02 -64.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165077604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.966 kcal (2) G-P(sol) polarization free energy of solvation -64.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds