Wall clock time and date at job start Tue Mar 31 2020 11:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48509 * 109.47054 * 240.00188 * 3 2 1 5 5 H 1.48498 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47394 * 120.00096 * 3 2 1 7 7 C 1.39873 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99599 * 163.21856 * 7 2 1 9 9 C 1.41189 * 120.00164 * 343.21332 * 7 2 1 10 10 C 1.40792 * 120.56736 * 155.70753 * 9 7 2 11 11 N 1.31472 * 120.39088 * 180.02562 * 10 9 7 12 12 C 1.32748 * 121.73891 * 359.97438 * 11 10 9 13 13 N 1.38403 * 119.43232 * 179.97438 * 12 11 10 14 14 C 1.47955 * 111.00482 * 359.97438 * 13 12 11 15 15 C 1.53935 * 86.18289 * 222.41663 * 14 13 12 16 16 C 1.50705 * 113.73396 * 138.07597 * 15 14 13 17 17 C 1.38668 * 120.41672 * 121.90038 * 16 15 14 18 18 C 1.38624 * 118.42005 * 179.97438 * 17 16 15 19 19 C 1.38230 * 119.16078 * 0.25085 * 18 17 16 20 20 N 1.31857 * 120.76213 * 359.50568 * 19 18 17 21 21 C 1.31885 * 121.72561 * 0.48549 * 20 19 18 22 22 C 1.48192 * 111.06846 * 260.55963 * 13 12 11 23 23 C 1.39794 * 121.12643 * 0.25289 * 12 11 10 24 24 Cl 1.73595 * 120.26063 * 179.72673 * 23 12 11 25 25 C 1.36669 * 119.47274 * 359.49478 * 23 12 11 26 26 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.80495 * 0.04492 * 10 9 7 28 28 H 1.09000 * 113.75718 * 108.10240 * 14 13 12 29 29 H 1.09004 * 113.75790 * 336.74016 * 14 13 12 30 30 H 1.08999 * 113.73527 * 269.25590 * 15 14 13 31 31 H 1.07998 * 120.78907 * 359.95768 * 17 16 15 32 32 H 1.07998 * 120.42346 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.61461 * 179.74445 * 19 18 17 34 34 H 1.07998 * 119.61723 * 179.75800 * 21 20 19 35 35 H 1.08997 * 113.75950 * 23.24795 * 22 13 12 36 36 H 1.09002 * 113.82659 * 251.81316 * 22 13 12 37 37 H 1.08001 * 120.79542 * 180.22602 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2126 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0082 -1.2114 -0.0005 8 1 3.0538 -1.2312 -0.2706 9 6 1.3474 -2.4082 0.3521 10 6 1.8240 -3.6511 -0.1065 11 7 1.2056 -4.7634 0.2236 12 6 0.1230 -4.7590 0.9917 13 7 -0.4905 -5.9583 1.3092 14 6 0.2219 -7.0984 0.6914 15 6 -1.1732 -7.6536 0.3525 16 6 -1.2720 -8.2422 -1.0314 17 6 -1.6535 -9.5638 -1.2065 18 6 -1.7313 -10.0624 -2.4976 19 6 -1.4231 -9.2331 -3.5597 20 7 -1.0683 -7.9797 -3.3557 21 6 -0.9840 -7.4716 -2.1416 22 6 -1.6689 -6.1994 0.4436 23 6 -0.4113 -3.5633 1.4807 24 17 -1.8322 -3.5831 2.4777 25 6 0.1968 -2.3790 1.1715 26 1 -0.4850 0.8401 -0.0004 27 1 2.7030 -3.6911 -0.7327 28 1 0.7760 -7.7086 1.4048 29 1 0.8109 -6.8256 -0.1844 30 1 -1.5844 -8.3066 1.1222 31 1 -1.8843 -10.1898 -0.3573 32 1 -2.0247 -11.0872 -2.6714 33 1 -1.4773 -9.6152 -4.5684 34 1 -0.6861 -6.4414 -2.0136 35 1 -1.6341 -5.6634 -0.5049 36 1 -2.6233 -6.0925 0.9592 37 1 -0.1957 -1.4430 1.5407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167069549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:12 Heat of formation + Delta-G solvation = 97.620475 kcal Electronic energy + Delta-G solvation = -22906.023603 eV Core-core repulsion = 19481.984229 eV Total energy + Delta-G solvation = -3424.039373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80822 -39.49720 -37.73682 -35.50136 -34.29585 -32.82868 -31.77096 -30.69738 -29.98962 -27.58217 -25.81616 -24.86323 -23.67423 -23.00437 -21.81929 -20.87240 -19.26091 -17.63559 -17.42258 -16.45944 -16.31976 -15.80272 -15.20303 -15.01106 -14.58290 -14.34022 -13.98081 -13.58516 -13.35566 -13.06300 -12.84109 -12.59437 -12.33609 -12.17461 -11.91554 -11.61893 -11.43299 -11.33468 -11.04535 -10.87508 -10.74937 -10.54123 -10.39959 -9.92597 -9.74190 -9.55087 -9.39726 -8.97638 -8.83026 -8.32247 -8.25679 -7.41580 -7.03837 -4.64781 1.11072 1.28847 2.28764 2.65826 2.93261 2.94581 3.00661 3.22121 3.71774 3.79705 4.19582 4.38380 4.54007 4.73117 4.88117 4.92493 4.96603 5.07628 5.28493 5.31717 5.54948 5.61675 5.72735 5.83954 5.91000 6.05627 6.08686 6.12307 6.25982 6.42453 6.51427 6.55233 6.73668 6.74238 6.79706 6.91149 7.01954 7.49904 7.65933 7.94071 8.02237 8.18740 8.44475 8.46142 9.26058 9.85702 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.003669 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.970462 B = 7630.023277 C = 8486.961751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.438 4.438 8 H 0.088 0.912 9 C 0.068 3.932 10 C -0.009 4.009 11 N -0.470 5.470 12 C 0.121 3.879 13 N -0.410 5.410 14 C 0.030 3.970 15 C -0.083 4.083 16 C -0.116 4.116 17 C -0.074 4.074 18 C -0.176 4.176 19 C 0.086 3.914 20 N -0.482 5.482 21 C 0.109 3.891 22 C 0.022 3.978 23 C -0.028 4.028 24 Cl -0.101 7.101 25 C -0.124 4.124 26 H 0.288 0.712 27 H 0.134 0.866 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -11.327 -1.337 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.063 3.937 10 C -0.172 4.172 11 N -0.180 5.180 12 C -0.109 4.109 13 N -0.130 5.130 14 C -0.099 4.099 15 C -0.103 4.103 16 C -0.118 4.118 17 C -0.100 4.100 18 C -0.196 4.196 19 C -0.071 4.071 20 N -0.190 5.190 21 C -0.048 4.048 22 C -0.105 4.105 23 C -0.058 4.058 24 Cl -0.073 7.073 25 C -0.151 4.151 26 H 0.100 0.900 27 H 0.152 0.848 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.574 -11.376 -1.566 12.027 hybrid contribution -0.199 1.166 0.304 1.222 sum -3.774 -10.209 -1.263 10.958 Atomic orbital electron populations 1.69787 1.07755 1.30321 1.32452 1.26044 0.94882 1.01946 0.91956 0.86201 0.80096 0.79351 0.80311 1.18628 1.20044 1.18500 1.19538 0.98046 0.90620 1.38454 0.89367 1.18431 0.91517 0.93892 0.89829 1.22413 1.02668 0.87380 1.04722 1.66984 1.07863 1.32260 1.10930 1.19082 0.97439 0.89786 1.04627 1.66142 1.04299 1.00161 1.42405 1.23819 0.94153 0.91674 1.00215 1.22049 0.99142 0.96530 0.92561 1.20836 0.99602 0.94661 0.96744 1.21488 0.96308 0.94753 0.97420 1.22097 1.02539 1.01281 0.93654 1.22755 0.95452 0.89576 0.99308 1.67739 1.12421 1.13865 1.24946 1.22770 0.94685 1.00338 0.86987 1.24036 0.96596 0.93028 0.96877 1.20982 0.91081 0.94822 0.98919 1.98259 1.40562 1.98971 1.69495 1.21360 0.98192 0.96026 0.99487 0.90045 0.84811 0.90094 0.88365 0.87784 0.84964 0.85082 0.83113 0.82699 0.91107 0.89439 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.59 10.91 55.54 0.61 -17.98 16 2 C 0.07 1.65 5.18 -17.34 -0.09 1.56 16 3 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.51 9.07 -37.85 -0.34 -10.86 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.07 1.69 5.59 -106.65 -0.60 1.09 16 10 C -0.01 -0.20 10.97 -16.74 -0.18 -0.39 16 11 N -0.47 -10.59 8.14 -11.75 -0.10 -10.68 16 12 C 0.12 2.65 5.90 -155.06 -0.91 1.74 16 13 N -0.41 -7.70 5.69 -176.41 -1.00 -8.71 16 14 C 0.03 0.49 7.11 -2.76 -0.02 0.47 16 15 C -0.08 -1.14 4.17 -90.85 -0.38 -1.52 16 16 C -0.12 -1.54 5.31 -104.48 -0.55 -2.09 16 17 C -0.07 -0.80 9.87 -39.28 -0.39 -1.19 16 18 C -0.18 -1.77 10.11 -39.44 -0.40 -2.17 16 19 C 0.09 1.01 11.18 -17.54 -0.20 0.81 16 20 N -0.48 -7.25 10.36 -13.25 -0.14 -7.38 16 21 C 0.11 1.65 9.73 -17.55 -0.17 1.48 16 22 C 0.02 0.36 6.79 -2.65 -0.02 0.35 16 23 C -0.03 -0.64 6.25 -39.57 -0.25 -0.88 16 24 Cl -0.10 -2.04 28.01 -51.86 -1.45 -3.49 16 25 C -0.12 -3.06 8.52 -38.99 -0.33 -3.39 16 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.77 6.19 -51.93 -0.32 1.45 16 30 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.16 2.58 6.77 -52.49 -0.36 2.22 16 35 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.14 3.52 6.20 -52.49 -0.33 3.20 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -26.49 327.96 -10.83 -37.32 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.83 Total: 8.85 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -4.83 Total: -14.98 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.63 Total: -44.75 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.45 Total: -3.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.49 -10.83 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167069549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.945 kcal (2) G-P(sol) polarization free energy of solvation -26.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds