Wall clock time and date at job start Tue Mar 31 2020 11:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48509 * 109.47054 * 240.00188 * 3 2 1 5 5 H 1.48498 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47394 * 120.00096 * 3 2 1 7 7 C 1.39873 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99599 * 163.21856 * 7 2 1 9 9 C 1.41189 * 120.00164 * 343.21332 * 7 2 1 10 10 C 1.40792 * 120.56736 * 155.70753 * 9 7 2 11 11 N 1.31472 * 120.39088 * 180.02562 * 10 9 7 12 12 C 1.32748 * 121.73891 * 359.97438 * 11 10 9 13 13 N 1.38403 * 119.43232 * 179.97438 * 12 11 10 14 14 C 1.47955 * 111.00482 * 359.97438 * 13 12 11 15 15 C 1.53935 * 86.18289 * 222.41663 * 14 13 12 16 16 C 1.50705 * 113.73396 * 138.07597 * 15 14 13 17 17 C 1.38668 * 120.41672 * 121.90038 * 16 15 14 18 18 C 1.38624 * 118.42005 * 179.97438 * 17 16 15 19 19 C 1.38230 * 119.16078 * 0.25085 * 18 17 16 20 20 N 1.31857 * 120.76213 * 359.50568 * 19 18 17 21 21 C 1.31885 * 121.72561 * 0.48549 * 20 19 18 22 22 C 1.48192 * 111.06846 * 260.55963 * 13 12 11 23 23 C 1.39794 * 121.12643 * 0.25289 * 12 11 10 24 24 Cl 1.73595 * 120.26063 * 179.72673 * 23 12 11 25 25 C 1.36669 * 119.47274 * 359.49478 * 23 12 11 26 26 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.80495 * 0.04492 * 10 9 7 28 28 H 1.09000 * 113.75718 * 108.10240 * 14 13 12 29 29 H 1.09004 * 113.75790 * 336.74016 * 14 13 12 30 30 H 1.08999 * 113.73527 * 269.25590 * 15 14 13 31 31 H 1.07998 * 120.78907 * 359.95768 * 17 16 15 32 32 H 1.07998 * 120.42346 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.61461 * 179.74445 * 19 18 17 34 34 H 1.07998 * 119.61723 * 179.75800 * 21 20 19 35 35 H 1.08997 * 113.75950 * 23.24795 * 22 13 12 36 36 H 1.09002 * 113.82659 * 251.81316 * 22 13 12 37 37 H 1.08001 * 120.79542 * 180.22602 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2126 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0082 -1.2114 -0.0005 8 1 3.0538 -1.2312 -0.2706 9 6 1.3474 -2.4082 0.3521 10 6 1.8240 -3.6511 -0.1065 11 7 1.2056 -4.7634 0.2236 12 6 0.1230 -4.7590 0.9917 13 7 -0.4905 -5.9583 1.3092 14 6 0.2219 -7.0984 0.6914 15 6 -1.1732 -7.6536 0.3525 16 6 -1.2720 -8.2422 -1.0314 17 6 -1.6535 -9.5638 -1.2065 18 6 -1.7313 -10.0624 -2.4976 19 6 -1.4231 -9.2331 -3.5597 20 7 -1.0683 -7.9797 -3.3557 21 6 -0.9840 -7.4716 -2.1416 22 6 -1.6689 -6.1994 0.4436 23 6 -0.4113 -3.5633 1.4807 24 17 -1.8322 -3.5831 2.4777 25 6 0.1968 -2.3790 1.1715 26 1 -0.4850 0.8401 -0.0004 27 1 2.7030 -3.6911 -0.7327 28 1 0.7760 -7.7086 1.4048 29 1 0.8109 -6.8256 -0.1844 30 1 -1.5844 -8.3066 1.1222 31 1 -1.8843 -10.1898 -0.3573 32 1 -2.0247 -11.0872 -2.6714 33 1 -1.4773 -9.6152 -4.5684 34 1 -0.6861 -6.4414 -2.0136 35 1 -1.6341 -5.6634 -0.5049 36 1 -2.6233 -6.0925 0.9592 37 1 -0.1957 -1.4430 1.5407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167069549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:11 Heat of formation + Delta-G solvation = 83.695741 kcal Electronic energy + Delta-G solvation = -22906.627424 eV Core-core repulsion = 19481.984229 eV Total energy + Delta-G solvation = -3424.643195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08722 -40.75859 -39.30937 -37.23106 -36.01573 -33.97354 -32.84908 -32.47407 -31.53540 -29.06325 -27.18871 -26.42527 -24.74025 -24.22664 -23.54071 -22.44015 -20.50693 -19.43027 -18.62159 -17.76539 -17.50774 -17.28374 -16.87871 -16.31966 -16.01775 -15.62870 -15.21609 -14.95431 -14.80222 -14.32340 -14.12757 -13.96607 -13.88583 -13.57709 -13.46801 -13.13088 -12.94777 -12.73046 -12.67092 -12.38662 -12.16001 -12.00345 -11.83077 -11.60227 -11.21709 -10.67705 -10.61790 -10.35391 -10.08617 -10.03930 -9.84599 -9.15331 -8.77023 -6.47795 0.15724 0.38530 0.50929 0.82260 1.38740 1.43829 1.48516 1.52252 2.14954 2.53201 2.81847 2.96223 3.46181 3.50437 3.63927 3.77547 3.92798 4.02410 4.09606 4.15394 4.29209 4.38489 4.53990 4.62463 4.66063 4.70928 4.77253 4.88058 4.88237 5.00465 5.08768 5.16162 5.22724 5.23570 5.32603 5.44505 5.70422 5.81461 5.82308 6.19506 6.42705 6.64924 6.66870 7.06150 7.44839 8.15233 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.003669 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.970462 B = 7630.023277 C = 8486.961751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.095 0.905 9 C 0.044 3.956 10 C -0.022 4.022 11 N -0.473 5.473 12 C 0.126 3.874 13 N -0.420 5.420 14 C 0.026 3.974 15 C -0.053 4.053 16 C -0.125 4.125 17 C -0.066 4.066 18 C -0.162 4.162 19 C 0.077 3.923 20 N -0.519 5.519 21 C 0.085 3.915 22 C 0.021 3.979 23 C -0.042 4.042 24 Cl -0.078 7.078 25 C -0.141 4.141 26 H 0.295 0.705 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -13.660 -1.104 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.113 0.887 9 C 0.039 3.961 10 C -0.184 4.184 11 N -0.184 5.184 12 C -0.104 4.104 13 N -0.140 5.140 14 C -0.102 4.102 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.092 4.092 18 C -0.181 4.181 19 C -0.080 4.080 20 N -0.228 5.228 21 C -0.071 4.071 22 C -0.107 4.107 23 C -0.073 4.073 24 Cl -0.050 7.050 25 C -0.168 4.168 26 H 0.106 0.894 27 H 0.163 0.837 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.195 0.805 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.288 -13.722 -1.333 14.438 hybrid contribution -0.085 1.706 0.197 1.719 sum -4.374 -12.017 -1.136 12.838 Atomic orbital electron populations 1.69840 1.09212 1.31544 1.32989 1.26895 0.95519 1.04975 0.90855 0.85123 0.78710 0.74894 0.80379 1.17926 1.19283 1.18245 1.19833 0.98580 0.91357 1.39712 0.88718 1.18719 0.92100 0.94795 0.90497 1.22652 1.03249 0.87398 1.05088 1.67085 1.08295 1.31924 1.11068 1.19460 0.96875 0.90922 1.03144 1.66128 1.05349 0.99363 1.43114 1.23840 0.95702 0.91076 0.99576 1.21897 0.96351 0.95134 0.93889 1.20734 1.00759 0.95864 0.95418 1.21904 0.94525 0.93617 0.99155 1.22538 1.00236 1.02732 0.92589 1.23336 0.94554 0.88638 1.01463 1.67652 1.13997 1.16030 1.25100 1.22426 0.96824 0.99605 0.88264 1.24017 0.96008 0.95184 0.95466 1.21145 0.91939 0.94806 0.99373 1.98247 1.39077 1.98945 1.68685 1.21320 0.98951 0.96108 1.00393 0.89399 0.83652 0.88685 0.90517 0.84629 0.81415 0.80925 0.80480 0.86006 0.93313 0.88451 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.88 10.91 21.82 0.24 -39.64 16 2 C 0.04 1.64 5.18 85.23 0.44 2.08 16 3 Si 0.99 35.31 29.59 68.60 2.03 37.34 16 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 5 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.47 -23.18 9.07 23.39 0.21 -22.97 16 8 H 0.09 4.40 7.90 -2.91 -0.02 4.38 16 9 C 0.04 2.27 5.59 -21.18 -0.12 2.15 16 10 C -0.02 -1.05 10.97 85.37 0.94 -0.11 16 11 N -0.47 -22.12 8.14 -191.08 -1.56 -23.68 16 12 C 0.13 5.71 5.90 133.32 0.79 6.50 16 13 N -0.42 -15.68 5.69 -712.05 -4.05 -19.73 16 14 C 0.03 0.85 7.11 86.41 0.61 1.46 16 15 C -0.05 -1.36 4.17 -10.90 -0.05 -1.41 16 16 C -0.13 -3.12 5.31 -19.77 -0.11 -3.23 16 17 C -0.07 -1.18 9.87 22.46 0.22 -0.96 16 18 C -0.16 -2.57 10.11 22.36 0.23 -2.34 16 19 C 0.08 1.63 11.18 84.69 0.95 2.58 16 20 N -0.52 -15.64 10.36 -195.84 -2.03 -17.67 16 21 C 0.08 2.64 9.73 84.67 0.82 3.46 16 22 C 0.02 0.68 6.79 86.35 0.59 1.26 16 23 C -0.04 -2.00 6.25 22.28 0.14 -1.86 16 24 Cl -0.08 -3.16 28.01 -2.72 -0.08 -3.24 16 25 C -0.14 -7.24 8.52 22.65 0.19 -7.05 16 26 H 0.30 13.12 8.30 -92.70 -0.77 12.35 16 27 H 0.15 6.49 8.06 -2.91 -0.02 6.47 16 28 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 2.84 6.19 -2.38 -0.01 2.83 16 30 H 0.14 2.66 8.10 -2.39 -0.02 2.64 16 31 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.12 4.46 6.77 -2.91 -0.02 4.44 16 35 H 0.05 1.82 6.20 -2.39 -0.01 1.80 16 36 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.13 6.69 6.20 -2.91 -0.02 6.67 16 Total: -1.00 -60.55 327.96 1.52 -59.03 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.11 Total: 28.03 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 5.86 Total: -20.43 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -7.40 Total: -100.73 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.08 Total: -3.24 kcal Total: -60.55 1.52 -59.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167069549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.721 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds