Wall clock time and date at job start Tue Mar 31 2020 10:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 C 1.52993 * 109.47431 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47261 * 180.02562 * 4 3 2 6 6 C 1.32711 * 120.00264 * 93.76938 * 5 4 3 7 7 H 1.08005 * 119.99661 * 7.23747 * 6 5 4 8 8 C 1.46800 * 120.00544 * 186.97135 * 6 5 4 9 9 N 1.29323 * 119.99552 * 353.68826 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 173.69419 * 8 6 5 11 11 H 1.48498 * 109.47160 * 89.99679 * 10 8 6 12 12 H 1.48501 * 109.46831 * 209.99694 * 10 8 6 13 13 H 1.48502 * 109.46983 * 329.99475 * 10 8 6 14 14 C 1.39065 * 120.00110 * 273.76375 * 5 4 3 15 15 C 1.39102 * 119.69991 * 86.59224 * 14 5 4 16 16 C 1.38435 * 119.13340 * 179.75387 * 15 14 5 17 17 N 1.48015 * 120.73669 * 180.28359 * 16 15 14 18 18 O 1.31699 * 119.99733 * 180.22937 * 17 16 15 19 19 O 1.31699 * 119.99863 * 0.23162 * 17 16 15 20 20 C 1.38761 * 118.52534 * 0.50830 * 16 15 14 21 21 C 1.38368 * 119.32125 * 359.75433 * 20 16 15 22 22 Cl 1.73606 * 119.59100 * 179.97438 * 21 20 16 23 23 N 1.32003 * 120.82515 * 359.97438 * 21 20 16 24 24 O 1.41598 * 119.20319 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.47228 * 59.99828 * 1 2 3 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46822 * 299.99965 * 1 2 3 28 28 H 1.08998 * 109.46822 * 240.00034 * 2 1 3 29 29 H 1.09001 * 109.47228 * 120.00172 * 2 1 3 30 30 H 1.09003 * 109.47022 * 59.99788 * 3 2 1 31 31 H 1.09001 * 109.47111 * 300.00244 * 3 2 1 32 32 H 1.09003 * 109.47151 * 59.99915 * 4 3 2 33 33 H 1.09001 * 109.47212 * 300.00231 * 4 3 2 34 34 H 0.97002 * 120.00346 * 180.02562 * 9 8 6 35 35 H 1.08001 * 120.43170 * 0.02562 * 15 14 5 36 36 H 1.07999 * 120.33975 * 179.76756 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3503 3.4238 1.1484 7 1 4.3406 2.8608 2.0700 8 6 4.6920 4.8514 1.1638 9 7 4.8282 5.4957 0.0508 10 14 4.9303 5.7372 2.7910 11 1 6.3549 5.6462 3.2002 12 1 4.5494 7.1643 2.6380 13 1 4.0759 5.1053 3.8283 14 6 4.2161 3.5059 -1.2002 15 6 3.1366 4.1874 -1.7527 16 6 3.3081 4.8670 -2.9465 17 7 2.1853 5.6089 -3.5627 18 8 2.3635 6.2467 -4.7011 19 8 1.0082 5.6314 -2.9725 20 6 4.5547 4.8331 -3.5551 21 6 5.5837 4.1309 -2.9531 22 17 7.1460 4.0834 -3.7087 23 7 5.3925 3.4965 -1.8114 24 8 6.4696 2.7880 -1.2258 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 5.0544 6.4389 0.0609 35 1 2.1783 4.1900 -1.2545 36 1 4.7200 5.3499 -4.4889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:04 Heat of formation + Delta-G solvation = 99.446787 kcal Electronic energy + Delta-G solvation = -24961.685247 eV Core-core repulsion = 21094.583054 eV Total energy + Delta-G solvation = -3867.102193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.53432 -37.99310 -36.95886 -35.90448 -35.13543 -33.51937 -33.06900 -32.67746 -30.17479 -29.14666 -28.74910 -25.85703 -25.51616 -23.77303 -22.61001 -21.65850 -20.97236 -19.43620 -17.36372 -17.01675 -16.78733 -16.04159 -15.86590 -15.55386 -15.35056 -14.90858 -14.51948 -14.33112 -14.13943 -13.78175 -13.14645 -12.91901 -12.78235 -12.53201 -12.33276 -11.95937 -11.69608 -11.50747 -11.32023 -11.17131 -11.14235 -11.01650 -10.62069 -10.57884 -10.52319 -10.05219 -9.71962 -9.56016 -9.30530 -9.30071 -8.74516 -8.03092 -7.86880 -7.30715 -4.04291 -0.18514 1.55261 1.92322 2.21373 2.43639 2.47842 2.57893 2.88777 3.01026 3.36268 3.50802 3.90040 4.10737 4.81583 4.88591 5.04199 5.18825 5.37383 5.48808 5.52328 5.55647 5.58820 5.61365 5.77284 5.79370 5.86717 5.91184 5.98901 6.12289 6.20161 6.32738 6.52610 6.57837 6.81796 7.32533 7.49707 7.78431 7.96685 8.51510 8.52850 8.87899 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008398 B = 0.006874 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.344862 B = 4072.300993 C = 4926.101393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.112 3.888 5 N -0.411 5.411 6 C -0.013 4.013 7 H 0.152 0.848 8 C -0.051 4.051 9 N -0.687 5.687 10 Si 0.968 3.032 11 H -0.258 1.258 12 H -0.262 1.262 13 H -0.251 1.251 14 C 0.353 3.647 15 C -0.030 4.030 16 C -0.038 4.038 17 N 0.038 4.962 18 O -0.343 6.343 19 O -0.343 6.343 20 C -0.120 4.120 21 C 0.155 3.845 22 Cl -0.028 7.028 23 N -0.183 5.183 24 O -0.572 6.572 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.319 0.681 35 H 0.151 0.849 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -6.649 8.193 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.182 4.182 4 C -0.010 4.010 5 N -0.111 5.111 6 C -0.160 4.160 7 H 0.169 0.831 8 C -0.272 4.272 9 N -0.326 5.326 10 Si 0.788 3.212 11 H -0.183 1.183 12 H -0.186 1.186 13 H -0.174 1.174 14 C 0.141 3.859 15 C -0.058 4.058 16 C -0.149 4.149 17 N 0.436 4.564 18 O -0.481 6.481 19 O -0.480 6.480 20 C -0.147 4.147 21 C 0.013 3.987 22 Cl 0.001 6.999 23 N 0.109 4.891 24 O -0.620 6.620 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.324 -6.797 7.974 10.561 hybrid contribution 0.441 0.968 0.337 1.116 sum -0.883 -5.828 8.311 10.190 Atomic orbital electron populations 1.21761 0.95615 1.01420 1.02165 1.21432 0.96114 0.96105 1.02155 1.22121 0.94711 0.97632 1.03710 1.21974 0.94141 0.80533 1.04348 1.41943 1.54301 1.12582 1.02299 1.23314 1.13986 0.91120 0.87558 0.83123 1.27651 1.01293 0.95975 1.02235 1.68662 1.20463 1.14048 1.29385 0.85151 0.80601 0.78984 0.76482 1.18291 1.18586 1.17404 1.16504 0.84822 0.98755 0.85826 1.20670 0.97222 0.95528 0.92407 1.18899 0.87483 1.10120 0.98399 1.49159 1.02365 1.02369 1.02495 1.96079 1.92060 1.50394 1.09534 1.96065 1.09666 1.75543 1.66751 1.20104 0.89585 1.02404 1.02612 1.20568 0.88197 1.01416 0.88542 1.98343 1.25653 1.97420 1.78533 1.43002 1.11000 1.26069 1.08994 1.97411 1.28580 1.60693 1.75334 0.92482 0.92893 0.92671 0.91810 0.91846 0.90764 0.90978 0.89824 0.89173 0.86503 0.83180 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.14 -1.65 5.53 -26.74 -0.15 -1.79 16 4 C 0.11 1.53 5.63 -4.05 -0.02 1.50 16 5 N -0.41 -7.28 1.97 -113.51 -0.22 -7.50 16 6 C -0.01 -0.21 9.95 -13.71 -0.14 -0.35 16 7 H 0.15 1.87 7.85 -52.48 -0.41 1.45 16 8 C -0.05 -0.90 5.61 -15.15 -0.09 -0.99 16 9 N -0.69 -14.00 9.82 56.00 0.55 -13.45 16 10 Si 0.97 13.25 29.65 -169.99 -5.04 8.21 16 11 H -0.26 -3.74 7.11 56.52 0.40 -3.34 16 12 H -0.26 -3.75 7.11 56.52 0.40 -3.35 16 13 H -0.25 -3.06 7.11 56.52 0.40 -2.66 16 14 C 0.35 7.41 3.41 -154.82 -0.53 6.88 16 15 C -0.03 -0.64 8.25 -39.19 -0.32 -0.96 16 16 C -0.04 -0.89 6.93 -79.68 -0.55 -1.44 16 17 N 0.04 0.98 4.98 34.09 0.17 1.15 16 18 O -0.34 -9.32 19.25 -31.57 -0.61 -9.93 16 19 O -0.34 -9.15 19.25 -31.57 -0.61 -9.76 16 20 C -0.12 -2.65 9.42 -39.34 -0.37 -3.02 16 21 C 0.16 3.50 7.17 -17.43 -0.13 3.38 16 22 Cl -0.03 -0.57 28.25 -51.86 -1.46 -2.03 16 23 N -0.18 -4.34 3.23 -9.47 -0.03 -4.37 16 24 O -0.57 -15.71 18.91 -11.47 -0.22 -15.92 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 32 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.32 6.12 8.26 -40.82 -0.34 5.79 16 35 H 0.15 3.00 7.41 -52.49 -0.39 2.61 16 36 H 0.15 3.19 7.67 -52.49 -0.40 2.79 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -32.95 337.91 -8.55 -41.51 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.09 Total: 6.11 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.08 Total: 0.91 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.47 Total: -24.18 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.43 Total: -35.61 kcal Atomic # 14 Polarization: 13.25 SS G_CDS: -5.04 Total: 8.21 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.46 Total: -2.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.95 -8.55 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.954 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds