Wall clock time and date at job start Tue Mar 31 2020 10:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 C 1.52993 * 109.47431 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47261 * 180.02562 * 4 3 2 6 6 C 1.32711 * 120.00264 * 93.76938 * 5 4 3 7 7 H 1.08005 * 119.99661 * 7.23747 * 6 5 4 8 8 C 1.46800 * 120.00544 * 186.97135 * 6 5 4 9 9 N 1.29323 * 119.99552 * 353.68826 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 173.69419 * 8 6 5 11 11 H 1.48498 * 109.47160 * 89.99679 * 10 8 6 12 12 H 1.48501 * 109.46831 * 209.99694 * 10 8 6 13 13 H 1.48502 * 109.46983 * 329.99475 * 10 8 6 14 14 C 1.39065 * 120.00110 * 273.76375 * 5 4 3 15 15 C 1.39102 * 119.69991 * 86.59224 * 14 5 4 16 16 C 1.38435 * 119.13340 * 179.75387 * 15 14 5 17 17 N 1.48015 * 120.73669 * 180.28359 * 16 15 14 18 18 O 1.31699 * 119.99733 * 180.22937 * 17 16 15 19 19 O 1.31699 * 119.99863 * 0.23162 * 17 16 15 20 20 C 1.38761 * 118.52534 * 0.50830 * 16 15 14 21 21 C 1.38368 * 119.32125 * 359.75433 * 20 16 15 22 22 Cl 1.73606 * 119.59100 * 179.97438 * 21 20 16 23 23 N 1.32003 * 120.82515 * 359.97438 * 21 20 16 24 24 O 1.41598 * 119.20319 * 179.97438 * 23 21 20 25 25 H 1.09001 * 109.47228 * 59.99828 * 1 2 3 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46822 * 299.99965 * 1 2 3 28 28 H 1.08998 * 109.46822 * 240.00034 * 2 1 3 29 29 H 1.09001 * 109.47228 * 120.00172 * 2 1 3 30 30 H 1.09003 * 109.47022 * 59.99788 * 3 2 1 31 31 H 1.09001 * 109.47111 * 300.00244 * 3 2 1 32 32 H 1.09003 * 109.47151 * 59.99915 * 4 3 2 33 33 H 1.09001 * 109.47212 * 300.00231 * 4 3 2 34 34 H 0.97002 * 120.00346 * 180.02562 * 9 8 6 35 35 H 1.08001 * 120.43170 * 0.02562 * 15 14 5 36 36 H 1.07999 * 120.33975 * 179.76756 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3503 3.4238 1.1484 7 1 4.3406 2.8608 2.0700 8 6 4.6920 4.8514 1.1638 9 7 4.8282 5.4957 0.0508 10 14 4.9303 5.7372 2.7910 11 1 6.3549 5.6462 3.2002 12 1 4.5494 7.1643 2.6380 13 1 4.0759 5.1053 3.8283 14 6 4.2161 3.5059 -1.2002 15 6 3.1366 4.1874 -1.7527 16 6 3.3081 4.8670 -2.9465 17 7 2.1853 5.6089 -3.5627 18 8 2.3635 6.2467 -4.7011 19 8 1.0082 5.6314 -2.9725 20 6 4.5547 4.8331 -3.5551 21 6 5.5837 4.1309 -2.9531 22 17 7.1460 4.0834 -3.7087 23 7 5.3925 3.4965 -1.8114 24 8 6.4696 2.7880 -1.2258 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 5.0544 6.4389 0.0609 35 1 2.1783 4.1900 -1.2545 36 1 4.7200 5.3499 -4.4889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:03 Heat of formation + Delta-G solvation = 61.681743 kcal Electronic energy + Delta-G solvation = -24963.322863 eV Core-core repulsion = 21094.583054 eV Total energy + Delta-G solvation = -3868.739808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.64170 -40.00731 -37.65438 -37.13691 -37.06207 -35.60351 -34.28596 -32.95652 -31.79235 -30.97102 -30.22463 -27.94959 -26.62516 -25.25259 -24.30348 -23.45904 -22.10995 -21.03318 -19.16615 -18.86631 -18.36685 -17.66261 -16.98725 -16.90813 -16.46379 -16.40318 -15.93722 -15.80698 -15.54908 -14.85125 -14.63958 -14.42667 -14.37569 -14.18864 -13.70270 -13.59453 -12.97774 -12.89493 -12.84661 -12.39120 -12.23313 -12.15424 -12.01656 -11.87162 -11.54348 -11.50722 -11.33317 -10.71683 -10.28353 -10.18927 -10.05581 -9.89265 -9.82746 -9.29792 -6.27535 -1.40384 -0.02298 0.37022 0.46694 0.78805 0.92638 1.08398 1.60402 1.91871 1.98954 2.28687 2.43465 2.53341 2.61821 3.16281 3.54352 3.59871 4.00313 4.01894 4.03443 4.23648 4.27025 4.40401 4.41718 4.55712 4.66362 4.70131 4.75914 4.93292 4.97306 5.04888 5.26200 5.27100 5.35088 5.47976 5.66580 6.24684 6.27912 6.86579 7.37389 8.32861 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008398 B = 0.006874 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.344862 B = 4072.300993 C = 4926.101393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.060 3.940 5 N -0.339 5.339 6 C 0.372 3.628 7 H 0.321 0.679 8 C -0.105 4.105 9 N -0.581 5.581 10 Si 1.051 2.949 11 H -0.236 1.236 12 H -0.277 1.277 13 H -0.156 1.156 14 C 0.316 3.684 15 C -0.149 4.149 16 C 0.038 3.962 17 N -0.054 5.054 18 O -0.661 6.661 19 O -0.650 6.650 20 C -0.204 4.204 21 C 0.206 3.794 22 Cl -0.018 7.018 23 N -0.238 5.238 24 O -0.653 6.653 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.196 0.804 34 H 0.364 0.636 35 H 0.132 0.868 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 -15.052 31.637 35.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C -0.182 4.182 4 C -0.056 4.056 5 N -0.001 5.001 6 C 0.190 3.810 7 H 0.336 0.664 8 C -0.340 4.340 9 N -0.202 5.202 10 Si 0.857 3.143 11 H -0.159 1.159 12 H -0.202 1.202 13 H -0.075 1.075 14 C 0.110 3.890 15 C -0.180 4.180 16 C -0.101 4.101 17 N 0.240 4.760 18 O -0.729 6.729 19 O -0.719 6.719 20 C -0.234 4.234 21 C 0.062 3.938 22 Cl 0.010 6.990 23 N 0.043 4.957 24 O -0.696 6.696 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.213 0.787 34 H 0.185 0.815 35 H 0.149 0.851 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.735 -15.006 30.782 34.901 hybrid contribution -0.030 1.441 -2.006 2.470 sum 6.705 -13.565 28.776 32.512 Atomic orbital electron populations 1.21807 0.96008 1.02255 1.01596 1.21406 0.95771 0.93757 1.04032 1.22208 0.91191 1.00503 1.04336 1.23617 0.96600 0.75034 1.10396 1.44749 1.35771 1.15032 1.04504 1.29158 0.67138 0.92780 0.91942 0.66449 1.31256 0.97829 0.96489 1.08472 1.69083 0.99272 1.17580 1.34233 0.84301 0.83607 0.77606 0.68816 1.15873 1.20206 1.07500 1.16254 0.85536 0.99190 0.88009 1.19382 0.96883 1.04393 0.97330 1.18911 0.86747 1.06428 0.97969 1.47406 1.01860 1.20129 1.06645 1.95625 1.93567 1.66241 1.17476 1.95563 1.14319 1.89726 1.72249 1.19654 0.91098 1.09093 1.03557 1.20112 0.87737 0.97714 0.88216 1.98311 1.24589 1.97319 1.78735 1.41142 1.08027 1.33735 1.12801 1.97305 1.29494 1.66254 1.76499 0.95430 0.91513 0.91177 0.92708 0.87147 0.86767 0.94590 0.89093 0.78699 0.81548 0.85068 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.11 -0.97 5.93 30.59 0.18 -0.79 16 3 C -0.14 -1.63 5.53 30.59 0.17 -1.46 16 4 C 0.06 0.58 5.63 86.38 0.49 1.06 16 5 N -0.34 -6.15 1.97 -513.03 -1.01 -7.16 16 6 C 0.37 1.92 9.95 86.80 0.86 2.79 16 7 H 0.32 -5.45 7.85 -2.91 -0.02 -5.47 16 8 C -0.10 -1.30 5.61 87.30 0.49 -0.81 16 9 N -0.58 -16.00 9.82 23.26 0.23 -15.78 16 10 Si 1.05 2.46 29.65 68.60 2.03 4.49 16 11 H -0.24 -0.86 7.11 99.48 0.71 -0.15 16 12 H -0.28 -2.69 7.11 99.48 0.71 -1.98 16 13 H -0.16 1.12 7.11 99.48 0.71 1.83 16 14 C 0.32 11.72 3.41 132.98 0.45 12.18 16 15 C -0.15 -7.24 8.25 22.52 0.19 -7.05 16 16 C 0.04 2.42 6.93 36.55 0.25 2.67 16 17 N -0.05 -4.42 4.98 -46.05 -0.23 -4.65 16 18 O -0.66 -59.00 19.25 3.52 0.07 -58.93 16 19 O -0.65 -55.05 19.25 3.52 0.07 -54.98 16 20 C -0.20 -12.02 9.42 22.43 0.21 -11.81 16 21 C 0.21 10.37 7.17 84.70 0.61 10.98 16 22 Cl -0.02 -0.80 28.25 -2.72 -0.08 -0.88 16 23 N -0.24 -10.63 3.23 -183.89 -0.59 -11.22 16 24 O -0.65 -30.34 18.91 -38.78 -0.73 -31.07 16 25 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.04 0.84 7.48 -2.39 -0.02 0.82 16 32 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.20 -1.08 7.92 -2.39 -0.02 -1.09 16 34 H 0.36 9.38 8.26 -92.71 -0.77 8.62 16 35 H 0.13 6.33 7.41 -2.91 -0.02 6.31 16 36 H 0.11 7.19 7.67 -2.91 -0.02 7.17 16 Total: -1.00 -158.62 337.91 5.48 -153.14 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 1.12 Total: 20.56 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.62 Total: 6.48 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -1.61 Total: -38.81 kcal Atomic # 8 Polarization: -144.38 SS G_CDS: -0.60 Total: -144.98 kcal Atomic # 14 Polarization: 2.46 SS G_CDS: 2.03 Total: 4.49 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -158.62 5.48 -153.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.818 kcal (2) G-P(sol) polarization free energy of solvation -158.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -153.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds