Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47301 * 240.00639 * 3 2 1 5 5 H 1.48501 * 109.47456 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47173 * 120.00721 * 3 2 1 7 7 C 1.39913 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99640 * 183.52864 * 7 2 1 9 9 C 1.41016 * 119.99628 * 3.53204 * 7 2 1 10 10 C 1.40739 * 120.29457 * 325.46440 * 9 7 2 11 11 C 1.36402 * 119.96621 * 179.97438 * 10 9 7 12 12 C 1.39054 * 120.57894 * 359.97275 * 11 10 9 13 13 Cl 1.73602 * 119.70688 * 180.02562 * 12 11 10 14 14 C 1.38323 * 120.59194 * 359.79729 * 12 11 10 15 15 C 1.38676 * 120.01261 * 0.45961 * 14 12 11 16 16 N 1.38746 * 120.28261 * 179.79424 * 15 14 12 17 17 C 1.46501 * 120.00120 * 5.42646 * 16 15 14 18 18 C 1.50701 * 115.54804 * 66.04756 * 17 16 15 19 19 C 1.38600 * 120.08061 * 29.28659 * 18 17 16 20 20 C 1.38888 * 117.97097 * 180.02562 * 19 18 17 21 21 C 1.38604 * 117.96733 * 359.97438 * 20 19 18 22 22 N 1.31931 * 119.84768 * 0.02562 * 21 20 19 23 23 N 1.28351 * 122.18339 * 359.71665 * 22 21 20 24 24 C 1.52996 * 117.50073 * 211.71151 * 17 16 15 25 25 C 1.52996 * 117.49754 * 280.37589 * 17 16 15 26 26 H 0.96998 * 119.99835 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.01915 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.71463 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.99414 * 180.25731 * 14 12 11 30 30 H 0.97002 * 119.99766 * 185.42021 * 16 15 14 31 31 H 1.07998 * 121.01659 * 359.97438 * 19 18 17 32 32 H 1.08000 * 121.01667 * 180.02562 * 20 19 18 33 33 H 1.08006 * 120.07445 * 180.02562 * 21 20 19 34 34 H 1.08996 * 117.50233 * 215.00056 * 24 17 16 35 35 H 1.09006 * 117.49528 * 0.02913 * 24 17 16 36 36 H 1.08998 * 117.50155 * 359.97438 * 25 17 16 37 37 H 1.09006 * 117.49525 * 144.97632 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6966 -1.2126 5 1 1.2779 2.7465 0.0006 6 1 3.0968 1.6964 1.2124 7 6 2.0086 -1.2117 -0.0005 8 1 3.0871 -1.2125 0.0570 9 6 1.3055 -2.4317 -0.0763 10 6 0.0486 -2.5664 0.5425 11 6 -0.6259 -3.7494 0.4645 12 6 -0.0832 -4.8291 -0.2235 13 17 -0.9616 -6.3241 -0.3090 14 6 1.1481 -4.7212 -0.8443 15 6 1.8575 -3.5316 -0.7761 16 7 3.0950 -3.4185 -1.3932 17 6 3.6045 -4.5157 -2.2196 18 6 2.8289 -4.7932 -3.4815 19 6 2.1512 -3.7667 -4.1203 20 6 1.4501 -4.0716 -5.2798 21 6 1.4720 -5.3834 -5.7268 22 7 2.1456 -6.2956 -5.0525 23 7 2.7975 -6.0129 -3.9836 24 6 5.1196 -4.7240 -2.2614 25 6 4.2318 -5.7106 -1.4987 26 1 -0.4850 0.8400 0.0004 27 1 -0.3820 -1.7333 1.0782 28 1 -1.5903 -3.8482 0.9406 29 1 1.5587 -5.5647 -1.3796 30 1 3.6228 -2.6129 -1.2776 31 1 2.1671 -2.7607 -3.7279 32 1 0.9052 -3.3096 -5.8173 33 1 0.9389 -5.6581 -6.6250 34 1 5.5555 -5.0618 -3.2016 35 1 5.7374 -4.0449 -1.6737 36 1 4.2659 -5.6802 -0.4097 37 1 4.0832 -6.6975 -1.9371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168524050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 101.920340 kcal Electronic energy + Delta-G solvation = -23581.141345 eV Core-core repulsion = 20157.288428 eV Total energy + Delta-G solvation = -3423.852917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93313 -38.62696 -37.09738 -35.41691 -33.56109 -33.09394 -32.50786 -31.86005 -29.52623 -27.91502 -25.18712 -24.82148 -24.28779 -22.35584 -21.65450 -20.70847 -19.72430 -17.40149 -17.08784 -16.94891 -16.43239 -16.10097 -15.07304 -15.01473 -14.61571 -14.33866 -14.05471 -13.41642 -13.18685 -13.03240 -12.65985 -12.54786 -12.42017 -11.53138 -11.50140 -11.36289 -11.25472 -11.07188 -11.05259 -10.77662 -10.68286 -10.42671 -10.06333 -10.02701 -9.84816 -9.70110 -9.49347 -9.38257 -9.20185 -8.86709 -7.38049 -6.77411 -6.54788 -4.39949 0.99622 1.06940 2.58314 2.92701 3.00782 3.01450 3.05173 3.37480 3.58364 3.74524 3.86488 4.18334 4.34967 4.52919 4.56872 4.75213 4.92364 5.12794 5.18346 5.23404 5.31008 5.48626 5.71525 5.73372 6.03058 6.15115 6.19103 6.20738 6.34197 6.37203 6.41954 6.72845 6.85145 7.07465 7.23255 7.32411 7.64079 7.81881 7.93657 8.19289 8.50562 8.61464 8.79767 8.85323 8.89528 10.19299 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.005871 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.424544 B = 4767.958115 C = 5955.824410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.072 0.928 9 C 0.070 3.930 10 C -0.122 4.122 11 C -0.131 4.131 12 C -0.096 4.096 13 Cl -0.131 7.131 14 C -0.158 4.158 15 C 0.124 3.876 16 N -0.706 5.706 17 C 0.156 3.844 18 C 0.110 3.890 19 C -0.089 4.089 20 C -0.122 4.122 21 C 0.028 3.972 22 N -0.246 5.246 23 N -0.242 5.242 24 C -0.155 4.155 25 C -0.159 4.159 26 H 0.279 0.721 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.405 0.595 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -2.823 -6.563 8.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.091 0.909 9 C 0.065 3.935 10 C -0.143 4.143 11 C -0.151 4.151 12 C -0.123 4.123 13 Cl -0.103 7.103 14 C -0.182 4.182 15 C 0.026 3.974 16 N -0.340 5.340 17 C 0.063 3.937 18 C -0.036 4.036 19 C -0.118 4.118 20 C -0.151 4.151 21 C -0.137 4.137 22 N -0.087 5.087 23 N -0.085 5.085 24 C -0.194 4.194 25 C -0.198 4.198 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.242 0.758 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.066 -4.499 -6.522 9.405 hybrid contribution -0.334 2.589 -0.273 2.624 sum 4.733 -1.911 -6.795 8.498 Atomic orbital electron populations 1.69747 1.07167 1.28852 1.37989 1.25767 0.94884 1.00840 0.92740 0.86317 0.79842 0.80543 0.79665 1.19258 1.20446 1.19101 1.19088 0.94139 0.89933 1.46254 0.90944 1.17318 0.93325 0.90809 0.92030 1.21045 0.96578 0.95640 1.01021 1.20303 0.99681 0.93007 1.02153 1.20094 0.95315 0.86301 1.10613 1.98233 1.77265 1.36786 1.98043 1.19949 0.95306 0.96680 1.06226 1.17719 0.87235 0.94494 0.97984 1.43179 1.19638 1.17668 1.53476 1.18279 0.92012 0.93730 0.89707 1.22203 0.95101 0.90753 0.95547 1.22260 0.93839 1.02013 0.93673 1.22395 0.98050 0.98118 0.96510 1.24195 0.97697 0.91102 1.00657 1.72979 1.04299 1.29986 1.01408 1.72777 1.13062 1.17574 1.05094 1.23263 0.90139 1.03052 1.02916 1.23435 1.01400 0.95152 0.99821 0.91013 0.84582 0.88554 0.87905 0.75754 0.82965 0.83508 0.81536 0.88298 0.87817 0.87923 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.52 10.61 55.55 0.59 -18.93 16 2 C 0.07 1.67 5.42 -17.32 -0.09 1.58 16 3 Si 0.91 17.42 29.56 -169.99 -5.03 12.40 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -10.77 8.34 -37.90 -0.32 -11.09 16 8 H 0.07 1.58 6.92 -52.49 -0.36 1.22 16 9 C 0.07 1.66 5.56 -106.63 -0.59 1.06 16 10 C -0.12 -2.95 8.61 -39.30 -0.34 -3.29 16 11 C -0.13 -3.00 9.74 -39.94 -0.39 -3.39 16 12 C -0.10 -2.13 6.33 -39.25 -0.25 -2.38 16 13 Cl -0.13 -2.63 28.94 -51.86 -1.50 -4.14 16 14 C -0.16 -3.45 8.66 -39.39 -0.34 -3.79 16 15 C 0.12 2.67 6.50 -83.30 -0.54 2.13 16 16 N -0.71 -12.65 4.87 -46.65 -0.23 -12.88 16 17 C 0.16 2.47 1.65 -132.97 -0.22 2.25 16 18 C 0.11 1.82 5.16 -82.41 -0.43 1.39 16 19 C -0.09 -1.39 9.54 -39.21 -0.37 -1.76 16 20 C -0.12 -1.60 10.21 -39.21 -0.40 -2.00 16 21 C 0.03 0.37 11.31 -17.37 -0.20 0.17 16 22 N -0.25 -4.02 11.50 30.55 0.35 -3.66 16 23 N -0.24 -4.17 10.49 33.59 0.35 -3.82 16 24 C -0.16 -1.99 10.16 -26.69 -0.27 -2.26 16 25 C -0.16 -2.34 9.36 -26.69 -0.25 -2.59 16 26 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 27 H 0.14 3.44 6.14 -52.48 -0.32 3.12 16 28 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 29 H 0.10 2.23 5.96 -52.48 -0.31 1.92 16 30 H 0.40 7.00 7.21 -40.82 -0.29 6.70 16 31 H 0.15 2.43 7.75 -52.49 -0.41 2.03 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.11 1.61 7.57 -51.93 -0.39 1.22 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -26.51 332.32 -9.21 -35.72 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -3.76 Total: 14.27 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -5.00 Total: -23.97 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 1.07 Total: -39.30 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.51 -9.21 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168524050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.645 kcal (2) G-P(sol) polarization free energy of solvation -26.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds