Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48503 * 109.47301 * 240.00639 * 3 2 1 5 5 H 1.48501 * 109.47456 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47173 * 120.00721 * 3 2 1 7 7 C 1.39913 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99640 * 183.52864 * 7 2 1 9 9 C 1.41016 * 119.99628 * 3.53204 * 7 2 1 10 10 C 1.40739 * 120.29457 * 325.46440 * 9 7 2 11 11 C 1.36402 * 119.96621 * 179.97438 * 10 9 7 12 12 C 1.39054 * 120.57894 * 359.97275 * 11 10 9 13 13 Cl 1.73602 * 119.70688 * 180.02562 * 12 11 10 14 14 C 1.38323 * 120.59194 * 359.79729 * 12 11 10 15 15 C 1.38676 * 120.01261 * 0.45961 * 14 12 11 16 16 N 1.38746 * 120.28261 * 179.79424 * 15 14 12 17 17 C 1.46501 * 120.00120 * 5.42646 * 16 15 14 18 18 C 1.50701 * 115.54804 * 66.04756 * 17 16 15 19 19 C 1.38600 * 120.08061 * 29.28659 * 18 17 16 20 20 C 1.38888 * 117.97097 * 180.02562 * 19 18 17 21 21 C 1.38604 * 117.96733 * 359.97438 * 20 19 18 22 22 N 1.31931 * 119.84768 * 0.02562 * 21 20 19 23 23 N 1.28351 * 122.18339 * 359.71665 * 22 21 20 24 24 C 1.52996 * 117.50073 * 211.71151 * 17 16 15 25 25 C 1.52996 * 117.49754 * 280.37589 * 17 16 15 26 26 H 0.96998 * 119.99835 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.01915 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.71463 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.99414 * 180.25731 * 14 12 11 30 30 H 0.97002 * 119.99766 * 185.42021 * 16 15 14 31 31 H 1.07998 * 121.01659 * 359.97438 * 19 18 17 32 32 H 1.08000 * 121.01667 * 180.02562 * 20 19 18 33 33 H 1.08006 * 120.07445 * 180.02562 * 21 20 19 34 34 H 1.08996 * 117.50233 * 215.00056 * 24 17 16 35 35 H 1.09006 * 117.49528 * 0.02913 * 24 17 16 36 36 H 1.08998 * 117.50155 * 359.97438 * 25 17 16 37 37 H 1.09006 * 117.49525 * 144.97632 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6966 -1.2126 5 1 1.2779 2.7465 0.0006 6 1 3.0968 1.6964 1.2124 7 6 2.0086 -1.2117 -0.0005 8 1 3.0871 -1.2125 0.0570 9 6 1.3055 -2.4317 -0.0763 10 6 0.0486 -2.5664 0.5425 11 6 -0.6259 -3.7494 0.4645 12 6 -0.0832 -4.8291 -0.2235 13 17 -0.9616 -6.3241 -0.3090 14 6 1.1481 -4.7212 -0.8443 15 6 1.8575 -3.5316 -0.7761 16 7 3.0950 -3.4185 -1.3932 17 6 3.6045 -4.5157 -2.2196 18 6 2.8289 -4.7932 -3.4815 19 6 2.1512 -3.7667 -4.1203 20 6 1.4501 -4.0716 -5.2798 21 6 1.4720 -5.3834 -5.7268 22 7 2.1456 -6.2956 -5.0525 23 7 2.7975 -6.0129 -3.9836 24 6 5.1196 -4.7240 -2.2614 25 6 4.2318 -5.7106 -1.4987 26 1 -0.4850 0.8400 0.0004 27 1 -0.3820 -1.7333 1.0782 28 1 -1.5903 -3.8482 0.9406 29 1 1.5587 -5.5647 -1.3796 30 1 3.6228 -2.6129 -1.2776 31 1 2.1671 -2.7607 -3.7279 32 1 0.9052 -3.3096 -5.8173 33 1 0.9389 -5.6581 -6.6250 34 1 5.5555 -5.0618 -3.2016 35 1 5.7374 -4.0449 -1.6737 36 1 4.2659 -5.6802 -0.4097 37 1 4.0832 -6.6975 -1.9371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168524050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 89.111500 kcal Electronic energy + Delta-G solvation = -23581.696778 eV Core-core repulsion = 20157.288428 eV Total energy + Delta-G solvation = -3424.408350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09572 -40.13722 -38.53144 -37.09774 -35.28364 -34.38512 -33.88663 -33.00002 -31.28674 -29.56133 -26.91121 -26.01645 -25.43833 -23.58316 -23.16147 -22.34798 -21.12934 -19.13847 -18.26075 -18.16822 -17.99410 -17.33074 -16.65494 -16.32222 -16.03684 -15.70017 -15.30983 -14.88779 -14.81203 -14.40177 -14.16493 -14.09875 -13.76902 -13.21719 -13.18412 -12.82752 -12.57927 -12.46947 -12.32646 -12.19283 -12.00291 -11.89795 -11.59035 -11.52705 -11.37226 -11.15799 -10.97970 -10.69757 -10.66125 -10.23396 -9.15978 -8.48829 -8.20266 -6.17325 -0.13226 -0.04960 0.84290 1.17113 1.45253 1.51768 1.54148 1.65146 2.26503 2.42339 2.46662 2.83060 3.03951 3.11000 3.42091 3.65791 3.72422 3.84977 4.01400 4.09644 4.13085 4.24585 4.43246 4.54203 4.66060 4.70736 4.92146 5.00018 5.02520 5.11062 5.14580 5.24752 5.31261 5.34598 5.50035 5.55480 5.89724 6.04587 6.18565 6.44452 6.81207 6.95926 7.07655 7.21288 7.73644 8.48640 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.005871 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.424544 B = 4767.958115 C = 5955.824410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.082 0.918 9 C 0.043 3.957 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.101 4.101 13 Cl -0.113 7.113 14 C -0.166 4.166 15 C 0.141 3.859 16 N -0.697 5.697 17 C 0.133 3.867 18 C 0.100 3.900 19 C -0.112 4.112 20 C -0.111 4.111 21 C 0.033 3.967 22 N -0.273 5.273 23 N -0.265 5.265 24 C -0.124 4.124 25 C -0.162 4.162 26 H 0.281 0.719 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.408 0.592 31 H 0.143 0.857 32 H 0.182 0.818 33 H 0.208 0.792 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 -2.535 -8.049 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.509 4.509 8 H 0.100 0.900 9 C 0.038 3.962 10 C -0.162 4.162 11 C -0.163 4.163 12 C -0.128 4.128 13 Cl -0.085 7.085 14 C -0.190 4.190 15 C 0.040 3.960 16 N -0.329 5.329 17 C 0.041 3.959 18 C -0.046 4.046 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.132 4.132 22 N -0.113 5.113 23 N -0.107 5.107 24 C -0.162 4.162 25 C -0.201 4.201 26 H 0.092 0.908 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.246 0.754 31 H 0.161 0.839 32 H 0.199 0.801 33 H 0.225 0.775 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.184 -4.243 -8.020 10.980 hybrid contribution -0.712 2.405 0.111 2.511 sum 5.472 -1.838 -7.909 9.791 Atomic orbital electron populations 1.69851 1.08615 1.29692 1.38892 1.26561 0.95495 1.03847 0.92005 0.85284 0.78460 0.76318 0.79844 1.18332 1.20532 1.18801 1.19339 0.94668 0.90230 1.46684 0.89959 1.17594 0.93698 0.91937 0.92988 1.20971 0.97516 0.95712 1.02031 1.20362 1.00125 0.92964 1.02799 1.20237 0.95612 0.86931 1.10052 1.98229 1.76848 1.35412 1.97966 1.19974 0.95416 0.96882 1.06721 1.17729 0.88040 0.93522 0.96665 1.43148 1.18342 1.18459 1.52997 1.18486 0.94022 0.93664 0.89705 1.22230 0.95595 0.90950 0.95835 1.22345 0.95183 1.01503 0.95114 1.22816 0.96692 0.99019 0.95390 1.24825 0.96546 0.90608 1.01206 1.72889 1.05286 1.31364 1.01759 1.72724 1.14181 1.17823 1.05933 1.23372 0.88278 1.01469 1.03128 1.23384 1.02223 0.94930 0.99586 0.90825 0.86343 0.87760 0.87780 0.75426 0.83903 0.80082 0.77506 0.87008 0.85933 0.88400 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.37 10.61 21.83 0.23 -41.14 16 2 C 0.03 1.52 5.42 85.24 0.46 1.98 16 3 Si 0.98 35.31 29.56 68.60 2.03 37.34 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.28 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.48 -22.35 8.34 23.36 0.19 -22.16 16 8 H 0.08 3.55 6.92 -2.91 -0.02 3.53 16 9 C 0.04 2.05 5.56 -21.17 -0.12 1.94 16 10 C -0.14 -7.05 8.61 22.45 0.19 -6.86 16 11 C -0.14 -6.63 9.74 22.04 0.21 -6.41 16 12 C -0.10 -4.50 6.33 22.49 0.14 -4.36 16 13 Cl -0.11 -4.45 28.94 -2.72 -0.08 -4.53 16 14 C -0.17 -7.26 8.66 22.39 0.19 -7.06 16 15 C 0.14 6.08 6.50 38.97 0.25 6.33 16 16 N -0.70 -24.60 4.87 -301.50 -1.47 -26.06 16 17 C 0.13 4.09 1.65 2.85 0.00 4.10 16 18 C 0.10 3.23 5.16 42.63 0.22 3.45 16 19 C -0.11 -3.40 9.54 22.51 0.21 -3.18 16 20 C -0.11 -2.63 10.21 22.51 0.23 -2.40 16 21 C 0.03 0.78 11.31 84.77 0.96 1.74 16 22 N -0.27 -8.52 11.50 -57.26 -0.66 -9.17 16 23 N -0.26 -8.88 10.49 -47.63 -0.50 -9.38 16 24 C -0.12 -2.93 10.16 30.62 0.31 -2.62 16 25 C -0.16 -4.61 9.36 30.62 0.29 -4.32 16 26 H 0.28 12.84 8.30 -92.71 -0.77 12.07 16 27 H 0.12 6.27 6.14 -2.91 -0.02 6.25 16 28 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.10 4.51 5.96 -2.91 -0.02 4.49 16 30 H 0.41 13.76 7.21 -92.71 -0.67 13.09 16 31 H 0.14 4.52 7.75 -2.91 -0.02 4.49 16 32 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.10 2.85 8.14 -2.39 -0.02 2.84 16 37 H 0.10 3.06 7.57 -2.38 -0.02 3.05 16 Total: -1.00 -57.70 332.32 3.78 -53.93 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.46 Total: 38.86 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 3.76 Total: -39.84 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.39 Total: -85.75 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 17 Polarization: -4.45 SS G_CDS: -0.08 Total: -4.53 kcal Total: -57.70 3.78 -53.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168524050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.041 kcal (2) G-P(sol) polarization free energy of solvation -57.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds