Wall clock time and date at job start Tue Mar 31 2020 11:02:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35674 * 116.99970 * 2 1
4 4 C 1.38816 * 119.64291 * 174.07319 * 3 2 1
5 5 C 1.38570 * 119.27420 * 180.27435 * 4 3 2
6 6 C 1.38528 * 118.56279 * 359.44232 * 5 4 3
7 7 N 1.48011 * 120.38846 * 180.29444 * 6 5 4
8 8 O 1.31699 * 120.00073 * 353.75507 * 7 6 5
9 9 O 1.31700 * 120.00132 * 173.75079 * 7 6 5
10 10 C 1.38958 * 119.22001 * 0.26967 * 6 5 4
11 11 N 1.39148 * 119.66259 * 180.02562 * 10 6 5
12 12 C 1.38358 * 119.99912 * 185.03754 * 11 10 6
13 13 C 1.39441 * 119.99923 * 232.51546 * 12 11 10
14 14 H 1.08001 * 119.99955 * 148.98865 * 13 12 11
15 15 C 1.41849 * 120.00015 * 328.98744 * 13 12 11
16 16 N 1.29789 * 119.99945 * 357.62621 * 15 13 12
17 17 Si 1.86798 * 120.00048 * 177.62724 * 15 13 12
18 18 H 1.48507 * 109.47140 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47411 * 120.00032 * 17 15 13
20 20 H 1.48507 * 109.47233 * 240.00072 * 17 15 13
21 21 C 1.40698 * 119.99971 * 52.51074 * 12 11 10
22 22 C 1.43207 * 119.99961 * 172.84657 * 21 12 11
23 23 N 6.31017 * 38.40970 * 12.55950 * 2 1 3
24 24 C 1.43204 * 120.00266 * 352.85618 * 21 12 11
25 25 N 3.70610 * 74.03234 * 44.58105 * 2 1 3
26 26 N 1.32293 * 119.63974 * 353.78105 * 3 2 1
27 27 H 1.08997 * 109.47234 * 55.42234 * 1 2 3
28 28 H 1.09002 * 109.47050 * 175.42880 * 1 2 3
29 29 H 1.09009 * 109.46980 * 295.42680 * 1 2 3
30 30 H 1.08003 * 120.36010 * 0.02562 * 4 3 2
31 31 H 1.08000 * 120.72174 * 179.70602 * 5 4 3
32 32 H 0.96996 * 120.00226 * 5.03774 * 11 10 6
33 33 H 0.97001 * 120.00135 * 185.00200 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2089 0.0000
4 6 3.4259 1.2758 0.1246
5 6 4.0465 2.5147 0.1294
6 6 3.2622 3.6489 -0.0028
7 7 3.8836 4.9923 -0.0094
8 8 5.1713 5.1234 0.2335
9 8 3.1487 6.0565 -0.2583
10 6 1.8854 3.5106 -0.1298
11 7 1.0889 4.6437 -0.2637
12 6 -0.2892 4.5219 -0.2858
13 6 -1.0230 5.0928 -1.3249
14 1 -1.9454 4.6346 -1.6499
15 6 -0.5580 6.2755 -1.9552
16 7 0.5261 6.8518 -1.5344
17 14 -1.5060 7.0034 -3.3908
18 1 -2.6971 6.1630 -3.6745
19 1 -1.9418 8.3811 -3.0486
20 1 -0.6324 7.0443 -4.5910
21 6 -0.9500 3.8218 0.7403
22 6 -2.3807 3.8248 0.8027
23 7 -3.5156 3.8266 0.8525
24 6 -0.1920 3.1065 1.7223
25 7 0.4095 2.5379 2.5010
26 7 1.3235 2.3107 -0.1246
27 1 -0.3633 0.5832 -0.8461
28 1 -0.3633 -1.0244 -0.0819
29 1 -0.3633 0.4413 0.9282
30 1 4.0097 0.3723 0.2207
31 1 5.1189 2.5942 0.2298
32 1 1.4997 5.5189 -0.3416
33 1 0.8049 7.6987 -1.9166
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169076399.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:02:42
Heat of formation + Delta-G solvation = 100.674055 kcal
Electronic energy + Delta-G solvation = -26162.850627 eV
Core-core repulsion = 22194.694159 eV
Total energy + Delta-G solvation = -3968.156468 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.080 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.07961 -38.96649 -37.93202 -37.07913 -35.37975 -34.89893 -34.24074 -33.65388
-32.39385 -31.43240 -29.47020 -27.54092 -27.25818 -25.51182 -23.60307 -22.65169
-21.39282 -19.39386 -18.71278 -18.26320 -17.93032 -17.45244 -16.92606 -16.21994
-16.15386 -15.58086 -15.38575 -15.22063 -14.23149 -14.01356 -13.72576 -13.55770
-13.49894 -12.89545 -12.67307 -12.39595 -12.00490 -11.88701 -11.82881 -11.72834
-11.63626 -11.50693 -11.14760 -11.07087 -10.86983 -10.84214 -10.63063 -10.44459
-10.29305 -10.15454 -9.79992 -9.38103 -8.58931 -7.78652 -7.44107 -5.58681
-0.21636 1.18485 1.41391 1.56146 2.08236 2.65032 2.72923 2.76236
2.96586 3.29776 3.41168 3.62941 3.73145 3.95886 4.06903 4.17096
4.29516 4.58507 4.82871 4.99692 5.03210 5.37217 5.40956 5.46948
5.53857 5.63056 5.83241 5.96539 6.14372 6.15838 6.32638 6.85747
6.98017 7.10841 7.16268 7.32460 7.57437 7.65553 7.99665 8.51355
8.82328 8.97570 9.14085
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.010493 B = 0.007346 C = 0.005147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2667.928149 B = 3810.704137 C = 5439.236874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.294 6.294
3 C 0.430 3.570
4 C -0.249 4.249
5 C 0.056 3.944
6 C -0.162 4.162
7 N 0.021 4.979
8 O -0.215 6.215
9 O -0.196 6.196
10 C 0.506 3.494
11 N -0.598 5.598
12 C 0.373 3.627
13 C -0.391 4.391
14 H 0.121 0.879
15 C 0.068 3.932
16 N -0.741 5.741
17 Si 0.938 3.062
18 H -0.248 1.248
19 H -0.260 1.260
20 H -0.262 1.262
21 C -0.278 4.278
22 C 0.324 3.676
23 N -0.522 5.522
24 C 0.319 3.681
25 N -0.531 5.531
26 N -0.561 5.561
27 H 0.073 0.927
28 H 0.097 0.903
29 H 0.066 0.934
30 H 0.157 0.843
31 H 0.166 0.834
32 H 0.448 0.552
33 H 0.315 0.685
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.940 -4.864 -5.162 8.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.198 6.198
3 C 0.243 3.757
4 C -0.273 4.273
5 C 0.030 3.970
6 C -0.262 4.262
7 N 0.480 4.520
8 O -0.397 6.397
9 O -0.371 6.371
10 C 0.261 3.739
11 N -0.244 5.244
12 C 0.270 3.730
13 C -0.419 4.419
14 H 0.138 0.862
15 C -0.162 4.162
16 N -0.362 5.362
17 Si 0.759 3.241
18 H -0.171 1.171
19 H -0.184 1.184
20 H -0.186 1.186
21 C -0.295 4.295
22 C 0.015 3.985
23 N -0.204 5.204
24 C 0.011 3.989
25 N -0.213 5.213
26 N -0.296 5.296
27 H 0.092 0.908
28 H 0.115 0.885
29 H 0.085 0.915
30 H 0.175 0.825
31 H 0.183 0.817
32 H 0.314 0.686
33 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 3.204 -6.166 -4.034 8.035
hybrid contribution 0.848 1.435 -0.742 1.824
sum 4.052 -4.732 -4.776 7.850
Atomic orbital electron populations
1.23083 0.75853 1.03156 1.04094 1.86232 1.24158 1.23795 1.85598
1.19832 0.89003 0.84293 0.82617 1.20728 0.91902 0.98488 1.16165
1.20951 1.01149 0.88581 0.86286 1.20410 0.92103 0.81933 1.31790
1.50006 1.02586 1.03535 0.95888 1.96208 0.92247 1.94856 1.56369
1.96007 1.58738 1.25880 1.56498 1.17660 0.84849 0.87368 0.84052
1.44659 1.05851 1.08765 1.65076 1.17064 0.80151 0.87611 0.88217
1.20475 1.07623 1.05996 1.07817 0.86152 1.26765 0.94426 0.96803
0.98184 1.68505 1.17522 1.15344 1.34842 0.85696 0.80277 0.79817
0.78302 1.17124 1.18401 1.18622 1.12740 0.83075 1.29368 1.04362
1.24606 0.91211 0.90965 0.91683 1.81067 1.12017 1.15397 1.11915
1.25056 0.92340 0.90660 0.90823 1.81068 1.09820 1.16110 1.14338
1.67364 1.37757 0.96349 1.28136 0.90813 0.88490 0.91522 0.82506
0.81663 0.68622 0.87122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 10.49 101.05 1.06 1.51 16
2 O -0.29 -4.34 10.47 -18.72 -0.20 -4.54 16
3 C 0.43 6.95 7.48 -17.14 -0.13 6.82 16
4 C -0.25 -3.37 10.04 -39.25 -0.39 -3.76 16
5 C 0.06 0.80 9.68 -39.35 -0.38 0.42 16
6 C -0.16 -2.97 6.92 -79.58 -0.55 -3.52 16
7 N 0.02 0.42 4.98 34.14 0.17 0.59 16
8 O -0.22 -4.15 19.24 -31.57 -0.61 -4.76 16
9 O -0.20 -4.16 16.26 -31.57 -0.51 -4.67 16
10 C 0.51 9.95 6.32 -154.87 -0.98 8.97 16
11 N -0.60 -12.57 4.78 -9.76 -0.05 -12.62 16
12 C 0.37 7.93 5.58 -83.54 -0.47 7.47 16
13 C -0.39 -7.93 8.40 -37.75 -0.32 -8.25 16
14 H 0.12 2.39 7.42 -52.49 -0.39 2.00 16
15 C 0.07 1.27 5.48 -17.03 -0.09 1.18 16
16 N -0.74 -14.36 10.73 55.65 0.60 -13.76 16
17 Si 0.94 14.36 29.58 -169.99 -5.03 9.33 16
18 H -0.25 -3.86 7.11 56.52 0.40 -3.46 16
19 H -0.26 -3.95 7.11 56.52 0.40 -3.55 16
20 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16
21 C -0.28 -6.03 5.59 -105.11 -0.59 -6.62 16
22 C 0.32 7.16 14.12 -22.47 -0.32 6.84 16
23 N -0.52 -11.88 18.54 41.84 0.78 -11.11 16
24 C 0.32 7.04 11.02 -22.46 -0.25 6.80 16
25 N -0.53 -11.95 18.14 41.85 0.76 -11.19 16
26 N -0.56 -10.42 5.36 -12.48 -0.07 -10.49 16
27 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16
28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
29 H 0.07 1.07 7.57 -51.92 -0.39 0.68 16
30 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16
31 H 0.17 1.88 7.68 -52.49 -0.40 1.48 16
32 H 0.45 9.59 2.54 -41.92 -0.11 9.49 16
33 H 0.32 5.44 8.28 -40.82 -0.34 5.10 16
LS Contribution 318.08 15.07 4.79 4.79
Total: -1.00 -25.59 318.08 -4.44 -30.03
By element:
Atomic # 1 Polarization: 12.21 SS G_CDS: -1.68 Total: 10.53 kcal
Atomic # 6 Polarization: 21.26 SS G_CDS: -3.40 Total: 17.86 kcal
Atomic # 7 Polarization: -60.76 SS G_CDS: 2.19 Total: -58.57 kcal
Atomic # 8 Polarization: -12.65 SS G_CDS: -1.32 Total: -13.97 kcal
Atomic # 14 Polarization: 14.36 SS G_CDS: -5.03 Total: 9.33 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -25.59 -4.44 -30.03 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169076399.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.706 kcal
(2) G-P(sol) polarization free energy of solvation -25.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.117 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds