Wall clock time and date at job start Tue Mar 31 2020 11:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35743 * 116.99696 * 2 1 4 4 C 1.39473 * 120.80644 * 359.97438 * 3 2 1 5 5 C 1.37838 * 119.25319 * 180.02562 * 4 3 2 6 6 N 1.32033 * 120.91105 * 359.74532 * 5 4 3 7 7 C 1.32479 * 121.76616 * 0.52358 * 6 5 4 8 8 N 1.39178 * 119.67762 * 179.75332 * 7 6 5 9 9 C 1.38350 * 119.99814 * 358.69104 * 8 7 6 10 10 C 1.39449 * 119.99650 * 303.20583 * 9 8 7 11 11 H 1.08005 * 120.00279 * 154.37662 * 10 9 8 12 12 C 1.41846 * 119.99855 * 334.36760 * 10 9 8 13 13 N 1.29793 * 119.99998 * 350.69765 * 12 10 9 14 14 Si 1.86806 * 119.99756 * 170.69756 * 12 10 9 15 15 H 1.48499 * 109.47234 * 60.00188 * 14 12 10 16 16 H 1.48501 * 109.46853 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47093 * 299.99927 * 14 12 10 18 18 C 1.40697 * 120.00640 * 123.20405 * 9 8 7 19 19 C 1.43201 * 120.00697 * 173.40728 * 18 9 8 20 20 N 9.42115 * 136.03253 * 7.19888 * 2 1 3 21 21 C 1.43207 * 119.99649 * 353.40861 * 18 9 8 22 22 N 7.11521 * 145.06338 * 47.75404 * 2 1 3 23 23 C 1.38884 * 120.65405 * 359.47499 * 7 6 5 24 24 N 1.48009 * 120.49150 * 180.23121 * 23 7 6 25 25 O 1.31705 * 119.99915 * 90.00081 * 24 23 7 26 26 O 1.31698 * 120.00556 * 270.00761 * 24 23 7 27 27 H 1.08997 * 109.47720 * 60.00303 * 1 2 3 28 28 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47497 * 299.99649 * 1 2 3 30 30 H 1.07995 * 120.37756 * 0.03987 * 4 3 2 31 31 H 1.07998 * 119.54539 * 179.97438 * 5 4 3 32 32 H 0.96997 * 119.99910 * 178.95807 * 8 7 6 33 33 H 0.96998 * 119.99649 * 185.05107 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3020 2.3898 -0.0005 5 6 1.9608 3.6005 -0.0011 6 7 3.2800 3.6549 0.0040 7 6 4.0233 2.5583 -0.0006 8 7 5.4109 2.6663 -0.0002 9 6 6.0075 3.9143 -0.0224 10 6 5.7133 4.8096 -1.0502 11 1 5.8163 5.8722 -0.8869 12 6 5.2788 4.3246 -2.3104 13 7 5.3268 3.0534 -2.5682 14 14 4.6377 5.5155 -3.5990 15 1 5.6998 6.4962 -3.9388 16 1 4.2507 4.7631 -4.8193 17 1 3.4536 6.2339 -3.0634 18 6 6.9112 4.2804 0.9921 19 6 7.6353 5.5120 0.8958 20 7 8.2097 6.4891 0.8196 21 6 7.1068 3.4211 2.1209 22 7 7.2620 2.7395 3.0163 23 6 3.4316 1.3018 0.0000 24 7 4.2655 0.0790 0.0001 25 8 4.6369 -0.4647 1.1407 26 8 4.6362 -0.4654 -1.1404 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2226 2.3555 -0.0003 31 1 1.3900 4.5174 -0.0019 32 1 5.9596 1.8665 0.0118 33 1 5.0994 2.7293 -3.4537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:07 Heat of formation + Delta-G solvation = 78.623203 kcal Electronic energy + Delta-G solvation = -25824.037130 eV Core-core repulsion = 21854.924465 eV Total energy + Delta-G solvation = -3969.112665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30010 -40.22845 -39.71464 -38.63845 -37.03519 -36.59669 -35.55026 -35.37844 -33.51151 -32.75791 -30.72562 -28.87192 -28.63776 -27.67111 -24.63669 -23.92651 -22.84946 -20.95754 -20.12779 -19.39592 -19.32242 -19.28329 -18.53374 -17.88250 -17.55655 -17.08300 -16.70064 -16.21071 -15.61150 -15.48494 -15.33420 -15.00057 -14.68394 -14.41646 -14.01261 -13.91386 -13.52900 -13.47771 -13.32433 -13.14074 -12.87095 -12.80102 -12.76262 -12.68992 -12.63195 -12.28910 -12.13758 -11.92188 -11.77852 -11.49316 -10.80745 -10.53089 -10.02167 -9.37851 -8.85305 -7.16965 -1.49776 -0.35955 0.00830 0.02233 0.66201 1.36221 1.45599 1.51838 1.62209 1.98260 2.06454 2.07185 2.16605 2.45013 2.51422 2.61693 3.30592 3.40379 3.42673 3.52202 3.57535 3.80332 4.24781 4.32489 4.35306 4.46480 4.52682 4.62952 4.67419 4.70709 5.04755 5.30559 5.38656 5.51303 5.72993 5.84323 6.03674 6.18277 6.46805 6.92020 7.10070 7.28285 7.68479 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.006465 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.114390 B = 4330.286141 C = 5519.542184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.243 3.757 4 C -0.296 4.296 5 C 0.217 3.783 6 N -0.532 5.532 7 C 0.503 3.497 8 N -0.632 5.632 9 C 0.361 3.639 10 C -0.332 4.332 11 H 0.115 0.885 12 C 0.048 3.952 13 N -0.736 5.736 14 Si 0.983 3.017 15 H -0.259 1.259 16 H -0.261 1.261 17 H -0.234 1.234 18 C -0.322 4.322 19 C 0.333 3.667 20 N -0.549 5.549 21 C 0.307 3.693 22 N -0.554 5.554 23 C -0.185 4.185 24 N -0.006 5.006 25 O -0.195 6.195 26 O -0.131 6.131 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.203 0.797 31 H 0.222 0.778 32 H 0.399 0.601 33 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 -1.421 -7.050 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.187 3.813 4 C -0.320 4.320 5 C 0.057 3.943 6 N -0.253 5.253 7 C 0.265 3.735 8 N -0.251 5.251 9 C 0.259 3.741 10 C -0.359 4.359 11 H 0.133 0.867 12 C -0.183 4.183 13 N -0.354 5.354 14 Si 0.800 3.200 15 H -0.183 1.183 16 H -0.185 1.185 17 H -0.157 1.157 18 C -0.341 4.341 19 C 0.026 3.974 20 N -0.232 5.232 21 C 0.001 3.999 22 N -0.237 5.237 23 C -0.276 4.276 24 N 0.488 4.512 25 O -0.389 6.389 26 O -0.345 6.345 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.104 0.896 30 H 0.220 0.780 31 H 0.239 0.761 32 H 0.235 0.765 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.516 0.090 -5.791 19.400 hybrid contribution 0.106 -1.709 -0.660 1.835 sum -18.409 -1.619 -6.451 19.574 Atomic orbital electron populations 1.23715 0.73168 1.06799 1.04320 1.86109 1.26499 1.25338 1.86459 1.18680 0.86986 0.87887 0.87738 1.22358 1.03598 0.89266 1.16758 1.23565 0.87672 0.99798 0.83259 1.67919 1.08771 1.25367 1.23273 1.17443 0.85581 0.85304 0.85190 1.41712 1.01981 1.08258 1.73114 1.16682 0.86948 0.81221 0.89295 1.20686 1.25667 0.96514 0.93034 0.86705 1.27371 0.91493 0.97553 1.01848 1.69220 1.24059 1.16698 1.25448 0.85164 0.80741 0.78300 0.75778 1.18330 1.18478 1.15705 1.12762 1.22708 0.97463 1.01176 1.24620 0.90466 0.91010 0.91254 1.81040 1.16233 1.14216 1.11691 1.25485 0.90940 0.91933 0.91569 1.81077 1.15356 1.13313 1.13966 1.20181 0.89152 0.81630 1.36685 1.50281 0.97823 1.01617 1.01484 1.96283 1.60730 1.66369 1.15558 1.96226 1.57782 1.64883 1.15606 0.89369 0.85897 0.89567 0.78017 0.76125 0.76495 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.33 -8.41 10.32 -90.67 -0.94 -9.34 16 3 C 0.24 6.73 6.73 22.74 0.15 6.88 16 4 C -0.30 -5.39 9.11 22.47 0.20 -5.19 16 5 C 0.22 4.48 11.17 84.57 0.94 5.43 16 6 N -0.53 -17.09 8.53 -193.37 -1.65 -18.74 16 7 C 0.50 18.89 6.10 132.92 0.81 19.70 16 8 N -0.63 -26.51 3.40 -184.83 -0.63 -27.13 16 9 C 0.36 15.49 5.51 39.01 0.21 15.71 16 10 C -0.33 -13.21 7.46 23.45 0.18 -13.03 16 11 H 0.12 4.54 7.28 -2.91 -0.02 4.52 16 12 C 0.05 1.72 4.84 85.89 0.42 2.13 16 13 N -0.74 -27.58 11.30 22.16 0.25 -27.33 16 14 Si 0.98 26.95 29.59 68.60 2.03 28.98 16 15 H -0.26 -7.46 7.11 99.48 0.71 -6.75 16 16 H -0.26 -6.79 7.11 99.48 0.71 -6.08 16 17 H -0.23 -5.92 7.11 99.48 0.71 -5.21 16 18 C -0.32 -14.78 5.87 -20.18 -0.12 -14.90 16 19 C 0.33 15.56 14.03 88.33 1.24 16.80 16 20 N -0.55 -26.22 18.54 19.00 0.35 -25.86 16 21 C 0.31 14.93 14.82 88.33 1.31 16.24 16 22 N -0.55 -28.21 18.54 19.01 0.35 -27.86 16 23 C -0.19 -6.77 6.34 36.70 0.23 -6.54 16 24 N -0.01 -0.23 3.82 -45.70 -0.17 -0.41 16 25 O -0.20 -8.75 19.97 3.51 0.07 -8.68 16 26 O -0.13 -5.50 19.97 3.52 0.07 -5.43 16 27 H 0.09 0.60 7.71 -2.39 -0.02 0.58 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.97 16 29 H 0.09 0.63 7.71 -2.39 -0.02 0.61 16 30 H 0.20 1.53 6.46 -2.91 -0.02 1.51 16 31 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.40 17.84 8.05 -92.71 -0.75 17.09 16 33 H 0.32 10.75 8.28 -92.71 -0.77 9.98 16 Total: -1.00 -64.77 328.78 6.92 -57.85 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.49 Total: 19.49 kcal Atomic # 6 Polarization: 37.79 SS G_CDS: 6.70 Total: 44.48 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -1.50 Total: -127.34 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.80 Total: -23.46 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: 2.03 Total: 28.98 kcal Total: -64.77 6.92 -57.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.474 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds