Wall clock time and date at job start Tue Mar 31 2020 11:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99895 * 2 1 4 4 C 1.39265 * 120.39185 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.45266 * 179.72917 * 4 3 2 6 6 C 1.39078 * 119.15689 * 0.49149 * 5 4 3 7 7 N 1.39358 * 119.64097 * 179.76903 * 6 5 4 8 8 C 1.38306 * 120.00506 * 353.59165 * 7 6 5 9 9 C 1.39456 * 119.99987 * 298.60992 * 8 7 6 10 10 H 1.08006 * 120.00213 * 161.68204 * 9 8 7 11 11 C 1.41846 * 120.00093 * 341.95893 * 9 8 7 12 12 N 1.29790 * 119.99738 * 350.72098 * 11 9 8 13 13 Si 1.86805 * 119.99982 * 170.72001 * 11 9 8 14 14 H 1.48499 * 109.47085 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46846 * 120.00025 * 13 11 9 16 16 H 1.48494 * 109.46890 * 239.99889 * 13 11 9 17 17 C 1.40711 * 119.99881 * 118.60701 * 8 7 6 18 18 C 1.43197 * 120.00626 * 5.27309 * 17 8 7 19 19 N 8.01765 * 115.85759 * 23.95136 * 2 1 3 20 20 C 1.43207 * 119.99968 * 185.27121 * 17 8 7 21 21 N 9.11797 * 93.19069 * 4.78740 * 2 1 3 22 22 N 1.32341 * 120.71167 * 359.49871 * 6 5 4 23 23 C 1.31960 * 121.68147 * 0.25347 * 22 6 5 24 24 N 1.48018 * 119.60890 * 179.97438 * 23 22 6 25 25 O 1.31698 * 120.00010 * 359.97438 * 24 23 22 26 26 O 1.31702 * 119.99935 * 180.02562 * 24 23 22 27 27 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00694 * 1 2 3 29 29 H 1.08999 * 109.46910 * 60.00100 * 1 2 3 30 30 H 1.07998 * 120.76858 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.42106 * 180.24529 * 5 4 3 32 32 H 0.97002 * 119.99493 * 173.58955 * 7 6 5 33 33 H 0.96997 * 120.00126 * 185.04520 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2959 2.3849 0.0005 5 6 1.9651 3.5953 0.0063 6 6 3.3559 3.6006 0.0008 7 7 4.0405 4.8145 0.0017 8 6 3.3430 6.0020 -0.1259 9 6 2.5938 6.2506 -1.2756 10 1 1.8273 7.0115 -1.2667 11 6 2.8344 5.5001 -2.4550 12 7 3.8636 4.7124 -2.5242 13 14 1.6701 5.6457 -3.9085 14 1 0.5838 6.6030 -3.5786 15 1 2.4177 6.1355 -5.0944 16 1 1.0836 4.3147 -4.2080 17 6 3.3892 6.9592 0.9044 18 6 4.2462 6.7553 2.0334 19 7 4.9258 6.5937 2.9290 20 6 2.5792 8.1374 0.8240 21 7 1.9365 9.0721 0.7598 22 7 4.0362 2.4655 0.0003 23 6 3.4292 1.2938 -0.0001 24 7 4.2354 0.0524 -0.0013 25 8 5.5506 0.1215 -0.0024 26 8 3.6376 -1.1211 -0.0023 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2165 2.3502 0.0005 31 1 1.4147 4.5245 0.0108 32 1 5.0062 4.8265 0.0917 33 1 4.0697 4.2555 -3.3546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:59 Heat of formation + Delta-G solvation = 100.015443 kcal Electronic energy + Delta-G solvation = -25348.517842 eV Core-core repulsion = 21380.332814 eV Total energy + Delta-G solvation = -3968.185028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.14054 -38.95687 -38.32539 -37.20448 -35.45899 -34.92810 -33.97219 -33.88764 -32.54086 -31.48896 -29.43516 -27.54090 -27.42665 -26.42420 -23.17775 -22.95355 -21.47138 -19.51581 -18.68936 -18.35782 -17.84114 -17.42337 -17.16113 -16.55269 -16.32811 -15.99070 -15.39353 -15.33294 -14.52802 -14.12923 -13.93018 -13.71612 -13.17779 -13.00825 -12.80870 -12.55351 -12.08949 -11.98659 -11.93808 -11.80395 -11.75643 -11.74275 -11.23221 -11.13096 -10.96185 -10.89956 -10.88518 -10.44183 -10.28464 -10.19845 -9.94728 -9.92127 -8.57246 -8.03814 -7.25169 -5.73172 -0.41933 1.10191 1.21983 1.29041 1.91280 2.49003 2.59097 2.60120 2.82721 3.15710 3.34265 3.61798 3.68215 3.86789 3.89690 4.10633 4.26330 4.42234 4.63065 4.86000 4.92398 4.93506 4.94921 5.26611 5.35125 5.52801 5.63415 5.86063 5.91065 6.02024 6.12645 6.72045 6.81462 6.86329 6.98229 7.32858 7.36782 7.63497 7.84299 8.26833 8.75665 8.89357 8.92737 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.005328 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.692578 B = 5254.163764 C = 6138.571419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.282 6.282 3 C 0.096 3.904 4 C -0.131 4.131 5 C -0.117 4.117 6 C 0.444 3.556 7 N -0.629 5.629 8 C 0.370 3.630 9 C -0.378 4.378 10 H 0.119 0.881 11 C 0.065 3.935 12 N -0.709 5.709 13 Si 0.920 3.080 14 H -0.244 1.244 15 H -0.259 1.259 16 H -0.261 1.261 17 C -0.301 4.301 18 C 0.304 3.696 19 N -0.522 5.522 20 C 0.323 3.677 21 N -0.524 5.524 22 N -0.470 5.470 23 C 0.216 3.784 24 N -0.009 5.009 25 O -0.159 6.159 26 O -0.160 6.160 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.414 0.586 33 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 -7.772 -5.050 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.192 6.192 3 C 0.041 3.959 4 C -0.158 4.158 5 C -0.143 4.143 6 C 0.202 3.798 7 N -0.255 5.255 8 C 0.266 3.734 9 C -0.405 4.405 10 H 0.136 0.864 11 C -0.168 4.168 12 N -0.327 5.327 13 Si 0.741 3.259 14 H -0.166 1.166 15 H -0.183 1.183 16 H -0.185 1.185 17 C -0.319 4.319 18 C -0.004 4.004 19 N -0.203 5.203 20 C 0.015 3.985 21 N -0.206 5.206 22 N -0.193 5.193 23 C -0.002 4.002 24 N 0.469 4.531 25 O -0.354 6.354 26 O -0.350 6.350 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.179 0.821 31 H 0.188 0.812 32 H 0.253 0.747 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.565 -6.436 -3.879 11.394 hybrid contribution -0.553 -0.516 -1.140 1.368 sum -9.119 -6.952 -5.019 12.517 Atomic orbital electron populations 1.23232 0.77935 1.04779 1.01588 1.86437 1.21590 1.23802 1.87391 1.19163 0.89835 0.87090 0.99847 1.21551 1.01231 0.90003 1.02996 1.22160 0.93634 1.00249 0.98234 1.17431 0.87421 0.84050 0.90894 1.41165 1.09636 1.00159 1.74504 1.16717 0.85822 0.81315 0.89539 1.20788 1.14944 1.12889 0.91929 0.86355 1.26719 0.95972 0.92030 1.02108 1.69273 1.19742 1.13875 1.29804 0.85941 0.80616 0.80583 0.78788 1.16632 1.18291 1.18523 1.12739 1.19476 0.99815 0.99876 1.25150 0.91449 0.92294 0.91521 1.81110 1.15921 1.10502 1.12807 1.24621 0.91129 0.90990 0.91807 1.81102 1.15788 1.12944 1.10787 1.65528 1.39742 0.95429 1.18552 1.19121 0.83230 0.84670 1.13226 1.50161 1.03033 1.03012 0.96900 1.96274 0.89016 1.95855 1.54226 1.96271 1.73768 1.09922 1.55063 0.87470 0.92176 0.92256 0.82085 0.81242 0.74737 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.15 16 2 O -0.28 -3.75 8.39 -42.01 -0.35 -4.11 16 3 C 0.10 1.41 6.69 -39.10 -0.26 1.15 16 4 C -0.13 -1.58 9.13 -39.17 -0.36 -1.94 16 5 C -0.12 -1.66 8.56 -39.24 -0.34 -2.00 16 6 C 0.44 7.55 6.00 -154.74 -0.93 6.63 16 7 N -0.63 -11.03 3.34 -9.71 -0.03 -11.07 16 8 C 0.37 6.54 4.94 -83.56 -0.41 6.13 16 9 C -0.38 -6.39 7.10 -37.75 -0.27 -6.66 16 10 H 0.12 2.01 6.97 -52.48 -0.37 1.64 16 11 C 0.06 1.04 4.78 -17.04 -0.08 0.96 16 12 N -0.71 -12.13 10.80 55.65 0.60 -11.53 16 13 Si 0.92 12.55 29.59 -169.99 -5.03 7.52 16 14 H -0.24 -3.35 7.11 56.52 0.40 -2.94 16 15 H -0.26 -3.65 7.11 56.52 0.40 -3.25 16 16 H -0.26 -3.55 7.11 56.52 0.40 -3.15 16 17 C -0.30 -5.77 5.87 -105.11 -0.62 -6.39 16 18 C 0.30 6.30 14.80 -22.48 -0.33 5.96 16 19 N -0.52 -11.59 18.54 41.83 0.78 -10.82 16 20 C 0.32 6.51 13.87 -22.47 -0.31 6.20 16 21 N -0.52 -11.17 18.54 41.84 0.78 -10.39 16 22 N -0.47 -8.76 10.10 -9.31 -0.09 -8.85 16 23 C 0.22 3.88 7.83 -146.01 -1.14 2.74 16 24 N -0.01 -0.17 4.98 32.95 0.16 0.00 16 25 O -0.16 -3.31 19.76 -31.57 -0.62 -3.93 16 26 O -0.16 -3.03 17.85 -39.26 -0.70 -3.74 16 27 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 29 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16 30 H 0.16 1.26 6.44 -52.49 -0.34 0.92 16 31 H 0.17 2.22 6.22 -52.49 -0.33 1.89 16 32 H 0.41 7.49 8.93 -40.82 -0.36 7.12 16 33 H 0.31 4.93 8.28 -40.82 -0.34 4.59 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -25.68 322.97 -5.46 -31.14 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -1.75 Total: 6.97 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: -4.06 Total: 13.94 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 2.19 Total: -52.65 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.68 Total: -11.77 kcal Atomic # 14 Polarization: 12.55 SS G_CDS: -5.03 Total: 7.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.68 -5.46 -31.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.152 kcal (2) G-P(sol) polarization free energy of solvation -25.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds