Wall clock time and date at job start Tue Mar 31 2020 11:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99895 * 2 1 4 4 C 1.39265 * 120.39185 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.45266 * 179.72917 * 4 3 2 6 6 C 1.39078 * 119.15689 * 0.49149 * 5 4 3 7 7 N 1.39358 * 119.64097 * 179.76903 * 6 5 4 8 8 C 1.38306 * 120.00506 * 353.59165 * 7 6 5 9 9 C 1.39456 * 119.99987 * 298.60992 * 8 7 6 10 10 H 1.08006 * 120.00213 * 161.68204 * 9 8 7 11 11 C 1.41846 * 120.00093 * 341.95893 * 9 8 7 12 12 N 1.29790 * 119.99738 * 350.72098 * 11 9 8 13 13 Si 1.86805 * 119.99982 * 170.72001 * 11 9 8 14 14 H 1.48499 * 109.47085 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46846 * 120.00025 * 13 11 9 16 16 H 1.48494 * 109.46890 * 239.99889 * 13 11 9 17 17 C 1.40711 * 119.99881 * 118.60701 * 8 7 6 18 18 C 1.43197 * 120.00626 * 5.27309 * 17 8 7 19 19 N 8.01765 * 115.85759 * 23.95136 * 2 1 3 20 20 C 1.43207 * 119.99968 * 185.27121 * 17 8 7 21 21 N 9.11797 * 93.19069 * 4.78740 * 2 1 3 22 22 N 1.32341 * 120.71167 * 359.49871 * 6 5 4 23 23 C 1.31960 * 121.68147 * 0.25347 * 22 6 5 24 24 N 1.48018 * 119.60890 * 179.97438 * 23 22 6 25 25 O 1.31698 * 120.00010 * 359.97438 * 24 23 22 26 26 O 1.31702 * 119.99935 * 180.02562 * 24 23 22 27 27 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00694 * 1 2 3 29 29 H 1.08999 * 109.46910 * 60.00100 * 1 2 3 30 30 H 1.07998 * 120.76858 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.42106 * 180.24529 * 5 4 3 32 32 H 0.97002 * 119.99493 * 173.58955 * 7 6 5 33 33 H 0.96997 * 120.00126 * 185.04520 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2959 2.3849 0.0005 5 6 1.9651 3.5953 0.0063 6 6 3.3559 3.6006 0.0008 7 7 4.0405 4.8145 0.0017 8 6 3.3430 6.0020 -0.1259 9 6 2.5938 6.2506 -1.2756 10 1 1.8273 7.0115 -1.2667 11 6 2.8344 5.5001 -2.4550 12 7 3.8636 4.7124 -2.5242 13 14 1.6701 5.6457 -3.9085 14 1 0.5838 6.6030 -3.5786 15 1 2.4177 6.1355 -5.0944 16 1 1.0836 4.3147 -4.2080 17 6 3.3892 6.9592 0.9044 18 6 4.2462 6.7553 2.0334 19 7 4.9258 6.5937 2.9290 20 6 2.5792 8.1374 0.8240 21 7 1.9365 9.0721 0.7598 22 7 4.0362 2.4655 0.0003 23 6 3.4292 1.2938 -0.0001 24 7 4.2354 0.0524 -0.0013 25 8 5.5506 0.1215 -0.0024 26 8 3.6376 -1.1211 -0.0023 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2165 2.3502 0.0005 31 1 1.4147 4.5245 0.0108 32 1 5.0062 4.8265 0.0917 33 1 4.0697 4.2555 -3.3546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:58 Heat of formation + Delta-G solvation = 86.950633 kcal Electronic energy + Delta-G solvation = -25349.084374 eV Core-core repulsion = 21380.332814 eV Total energy + Delta-G solvation = -3968.751561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33262 -40.15177 -39.65757 -38.55916 -36.99494 -36.55047 -35.42512 -35.21631 -33.70302 -32.83914 -30.68926 -28.87769 -28.42423 -27.64704 -24.46641 -24.10127 -22.82411 -20.94088 -19.92410 -19.67881 -19.05622 -18.75354 -18.55029 -17.83435 -17.52957 -17.18365 -16.63398 -16.49950 -15.60646 -15.33679 -14.97657 -14.87001 -14.57604 -14.36287 -14.16081 -13.91825 -13.48856 -13.40703 -13.29150 -13.21930 -12.84274 -12.73799 -12.63329 -12.54272 -12.42954 -12.26641 -12.02414 -11.80821 -11.66161 -11.46819 -11.15799 -11.02108 -9.94723 -9.30706 -8.56081 -7.20095 -1.81987 -0.11674 -0.01918 0.01123 0.60588 1.37294 1.48772 1.58024 1.79236 2.02495 2.05849 2.12284 2.24512 2.38766 2.55171 2.56166 3.17381 3.33323 3.37084 3.45686 3.66619 3.86754 4.35081 4.41119 4.45014 4.53878 4.58337 4.59330 4.62484 4.83763 4.87101 5.33627 5.43711 5.55700 5.89305 5.96392 6.01555 6.31054 6.47981 6.93037 7.18417 7.34494 7.62117 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.005328 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.692578 B = 5254.163764 C = 6138.571419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.298 6.298 3 C 0.125 3.875 4 C -0.110 4.110 5 C -0.108 4.108 6 C 0.431 3.569 7 N -0.636 5.636 8 C 0.368 3.632 9 C -0.360 4.360 10 H 0.124 0.876 11 C 0.045 3.955 12 N -0.722 5.722 13 Si 0.975 3.025 14 H -0.239 1.239 15 H -0.267 1.267 16 H -0.253 1.253 17 C -0.313 4.313 18 C 0.313 3.687 19 N -0.560 5.560 20 C 0.332 3.668 21 N -0.548 5.548 22 N -0.505 5.505 23 C 0.174 3.826 24 N -0.003 5.003 25 O -0.236 6.236 26 O -0.141 6.141 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.217 0.783 31 H 0.186 0.814 32 H 0.406 0.594 33 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.189 -8.145 -6.487 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.208 6.208 3 C 0.068 3.932 4 C -0.136 4.136 5 C -0.133 4.133 6 C 0.188 3.812 7 N -0.262 5.262 8 C 0.265 3.735 9 C -0.387 4.387 10 H 0.141 0.859 11 C -0.187 4.187 12 N -0.340 5.340 13 Si 0.793 3.207 14 H -0.162 1.162 15 H -0.192 1.192 16 H -0.177 1.177 17 C -0.332 4.332 18 C 0.007 3.993 19 N -0.243 5.243 20 C 0.025 3.975 21 N -0.231 5.231 22 N -0.229 5.229 23 C -0.043 4.043 24 N 0.466 4.534 25 O -0.413 6.413 26 O -0.341 6.341 27 H 0.144 0.856 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.234 0.766 31 H 0.204 0.796 32 H 0.243 0.757 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.345 -6.821 -5.300 15.067 hybrid contribution 0.373 -0.525 -0.812 1.036 sum -11.972 -7.346 -6.112 15.318 Atomic orbital electron populations 1.23757 0.74482 1.07037 1.03822 1.86446 1.25075 1.23167 1.86122 1.19347 0.88700 0.88653 0.96518 1.22111 1.03416 0.87722 1.00364 1.22475 0.92388 1.01911 0.96567 1.17704 0.88515 0.83314 0.91644 1.41159 1.09271 1.00499 1.75254 1.16680 0.86146 0.81242 0.89451 1.21008 1.13910 1.12190 0.91619 0.85867 1.27301 0.96655 0.91316 1.03415 1.69324 1.20441 1.13642 1.30568 0.85148 0.78915 0.80795 0.75837 1.16176 1.19154 1.17719 1.12732 1.20040 1.00297 1.00144 1.25401 0.91089 0.91450 0.91356 1.81102 1.17417 1.11719 1.14064 1.24673 0.90775 0.90807 0.91250 1.81103 1.16897 1.13539 1.11598 1.65281 1.41188 0.96169 1.20230 1.19357 0.84244 0.83923 1.16736 1.50465 1.03032 1.03680 0.96192 1.96274 0.89997 1.96034 1.58974 1.96207 1.73508 1.11006 1.53331 0.85550 0.89843 0.89896 0.76624 0.79645 0.75713 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.83 113.37 1.11 1.14 16 2 O -0.30 -6.84 8.39 -72.29 -0.61 -7.45 16 3 C 0.12 3.30 6.69 22.58 0.15 3.45 16 4 C -0.11 -2.13 9.13 22.53 0.21 -1.93 16 5 C -0.11 -2.73 8.56 22.49 0.19 -2.54 16 6 C 0.43 14.32 6.00 132.95 0.80 15.11 16 7 N -0.64 -22.28 3.34 -184.64 -0.62 -22.89 16 8 C 0.37 12.68 4.94 39.02 0.19 12.87 16 9 C -0.36 -11.36 7.10 23.46 0.17 -11.20 16 10 H 0.12 3.82 6.97 -2.91 -0.02 3.80 16 11 C 0.05 1.34 4.78 85.89 0.41 1.75 16 12 N -0.72 -23.69 10.80 22.16 0.24 -23.45 16 13 Si 0.97 22.74 29.59 68.60 2.03 24.77 16 14 H -0.24 -5.45 7.11 99.48 0.71 -4.75 16 15 H -0.27 -6.63 7.11 99.48 0.71 -5.92 16 16 H -0.25 -5.64 7.11 99.48 0.71 -4.94 16 17 C -0.31 -11.87 5.87 -20.18 -0.12 -11.99 16 18 C 0.31 13.14 14.80 88.33 1.31 14.45 16 19 N -0.56 -25.44 18.54 19.00 0.35 -25.09 16 20 C 0.33 13.11 13.87 88.33 1.23 14.34 16 21 N -0.55 -22.82 18.54 19.01 0.35 -22.47 16 22 N -0.51 -19.13 10.10 -183.36 -1.85 -20.98 16 23 C 0.17 6.22 7.83 129.68 1.01 7.23 16 24 N 0.00 -0.14 4.98 -49.68 -0.25 -0.39 16 25 O -0.24 -10.61 19.76 3.52 0.07 -10.54 16 26 O -0.14 -5.33 17.85 10.87 0.19 -5.14 16 27 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.50 7.69 -2.39 -0.02 0.49 16 29 H 0.08 0.50 7.69 -2.39 -0.02 0.48 16 30 H 0.22 1.76 6.44 -2.91 -0.02 1.74 16 31 H 0.19 4.10 6.22 -2.91 -0.02 4.09 16 32 H 0.41 15.23 8.93 -92.71 -0.83 14.40 16 33 H 0.31 9.60 8.28 -92.71 -0.77 8.83 16 Total: -1.00 -58.89 322.97 6.99 -51.90 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.41 Total: 19.03 kcal Atomic # 6 Polarization: 36.02 SS G_CDS: 6.66 Total: 42.68 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -1.77 Total: -115.26 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.34 Total: -23.12 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: 2.03 Total: 24.77 kcal Total: -58.89 6.99 -51.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.855 kcal (2) G-P(sol) polarization free energy of solvation -58.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds