Wall clock time and date at job start Tue Mar 31 2020 11:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35760 * 117.00084 * 2 1 4 4 N 1.32133 * 119.72373 * 359.72376 * 3 2 1 5 5 C 1.32010 * 121.71789 * 179.71142 * 4 3 2 6 6 C 1.38074 * 120.98415 * 0.56791 * 5 4 3 7 7 N 1.48022 * 120.32647 * 179.74534 * 6 5 4 8 8 O 1.31699 * 120.00131 * 185.07590 * 7 6 5 9 9 O 1.31695 * 119.99758 * 5.07091 * 7 6 5 10 10 C 1.38730 * 119.35279 * 359.72669 * 6 5 4 11 11 C 1.39007 * 118.41977 * 359.97438 * 10 6 5 12 12 N 1.39948 * 120.51487 * 180.02562 * 11 10 6 13 13 C 1.38213 * 119.99764 * 354.18368 * 12 11 10 14 14 C 1.39501 * 119.99635 * 300.48938 * 13 12 11 15 15 H 1.08003 * 119.99778 * 152.37416 * 14 13 12 16 16 C 1.41824 * 120.00418 * 332.37817 * 14 13 12 17 17 N 1.29800 * 119.99893 * 2.94897 * 16 14 13 18 18 Si 1.86805 * 120.00097 * 182.95170 * 16 14 13 19 19 H 1.48504 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47238 * 119.99746 * 18 16 14 21 21 H 1.48501 * 109.47127 * 239.99993 * 18 16 14 22 22 C 1.40732 * 119.99847 * 120.49103 * 13 12 11 23 23 C 1.43198 * 119.99811 * 174.75690 * 22 13 12 24 24 N 7.55743 * 174.71112 * 123.45039 * 2 1 3 25 25 C 1.43197 * 120.00362 * 354.75910 * 22 13 12 26 26 N 5.13645 * 139.97916 * 112.13463 * 2 1 3 27 27 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47691 * 299.99999 * 1 2 3 29 29 H 1.09002 * 109.47288 * 60.00438 * 1 2 3 30 30 H 1.08007 * 119.50833 * 180.29428 * 5 4 3 31 31 H 1.08000 * 120.79612 * 180.02562 * 10 6 5 32 32 H 0.96993 * 120.00749 * 174.18709 * 12 11 10 33 33 H 0.97002 * 119.99798 * 185.00525 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3203 2.3143 -0.0055 5 6 1.8783 3.5107 -0.0001 6 6 3.2515 3.6545 -0.0001 7 7 3.8618 5.0031 0.0004 8 8 5.1683 5.1347 -0.1005 9 8 3.0982 6.0713 0.1016 10 6 4.0538 2.5227 -0.0001 11 6 3.4391 1.2760 0.0004 12 7 4.2061 0.1054 0.0010 13 6 5.5809 0.1801 -0.1203 14 6 6.1505 0.7706 -1.2485 15 1 7.1241 1.2333 -1.1824 16 6 5.4510 0.7635 -2.4822 17 7 4.2571 0.2586 -2.5485 18 14 6.2480 1.4807 -4.0120 19 1 7.6012 1.9898 -3.6728 20 1 6.3615 0.4265 -5.0516 21 1 5.4147 2.5966 -4.5274 22 6 6.4060 -0.3396 0.8944 23 6 7.8270 -0.3643 0.7193 24 7 8.9542 -0.3840 0.5812 25 6 5.8246 -0.8439 2.1020 26 7 5.3624 -1.2445 3.0596 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.2513 4.3901 -0.0001 31 1 5.1305 2.6081 0.0004 32 1 3.7731 -0.7582 0.0864 33 1 3.8074 0.1875 -3.4050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:44 Heat of formation + Delta-G solvation = 88.382871 kcal Electronic energy + Delta-G solvation = -25596.481969 eV Core-core repulsion = 21627.792515 eV Total energy + Delta-G solvation = -3968.689454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13493 -38.85949 -38.12159 -37.38016 -35.54682 -34.90192 -34.20471 -33.99149 -32.25770 -31.60608 -28.95413 -27.79703 -27.27098 -26.12403 -23.75289 -22.45159 -21.45981 -19.36698 -18.67139 -18.51887 -18.10017 -17.41612 -17.12436 -16.48169 -16.15984 -15.70435 -15.62569 -15.32041 -14.36597 -14.14914 -13.75661 -13.55532 -13.17084 -12.97647 -12.75774 -12.46883 -12.05510 -11.99503 -11.85605 -11.82826 -11.71123 -11.42535 -11.31748 -11.15184 -11.11192 -11.02434 -10.99691 -10.56658 -10.44249 -10.25400 -10.09429 -9.65246 -8.47304 -7.93570 -7.09572 -5.66997 -0.46798 1.09778 1.27597 1.32916 2.00353 2.62047 2.68860 2.73722 2.87749 3.30013 3.44039 3.56656 3.69556 3.89074 3.99296 4.10753 4.18321 4.49221 4.74978 4.88403 4.96525 5.19436 5.22388 5.25338 5.39749 5.52126 5.69789 5.87382 6.02019 6.11143 6.20851 6.74391 6.90094 6.98804 7.05748 7.41082 7.44553 7.55040 7.88865 8.12266 8.75587 8.95525 9.01874 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.006623 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.267319 B = 4226.374695 C = 4908.819305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.292 6.292 3 C 0.312 3.688 4 N -0.497 5.497 5 C 0.143 3.857 6 C -0.044 4.044 7 N -0.003 5.003 8 O -0.166 6.166 9 O -0.190 6.190 10 C -0.073 4.073 11 C 0.215 3.785 12 N -0.633 5.633 13 C 0.368 3.632 14 C -0.386 4.386 15 H 0.117 0.883 16 C 0.071 3.929 17 N -0.727 5.727 18 Si 0.923 3.077 19 H -0.243 1.243 20 H -0.261 1.261 21 H -0.262 1.262 22 C -0.293 4.293 23 C 0.323 3.677 24 N -0.520 5.520 25 C 0.305 3.695 26 N -0.524 5.524 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.414 0.586 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 2.228 -4.761 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.197 6.197 3 C 0.127 3.873 4 N -0.221 5.221 5 C -0.017 4.017 6 C -0.135 4.135 7 N 0.474 4.526 8 O -0.361 6.361 9 O -0.379 6.379 10 C -0.103 4.103 11 C 0.105 3.895 12 N -0.253 5.253 13 C 0.264 3.736 14 C -0.414 4.414 15 H 0.135 0.865 16 C -0.160 4.160 17 N -0.346 5.346 18 Si 0.744 3.256 19 H -0.165 1.165 20 H -0.185 1.185 21 H -0.187 1.187 22 C -0.310 4.310 23 C 0.014 3.986 24 N -0.201 5.201 25 C -0.003 4.003 26 N -0.205 5.205 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.197 0.803 31 H 0.197 0.803 32 H 0.252 0.748 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.721 0.617 -3.627 11.334 hybrid contribution 0.501 0.522 -1.158 1.366 sum -10.220 1.139 -4.785 11.342 Atomic orbital electron populations 1.22924 0.76750 1.03271 1.02543 1.86261 1.23178 1.23288 1.86960 1.19655 0.87792 0.85460 0.94367 1.67577 1.37932 0.97342 1.19297 1.21986 0.89683 0.95126 0.94920 1.20978 0.93851 0.80641 1.18039 1.50215 1.02960 1.03797 0.95659 1.96301 0.89905 1.95203 1.54683 1.96234 1.59226 1.26280 1.56165 1.20966 1.03188 0.87511 0.98668 1.17208 0.86859 0.87821 0.97609 1.41412 1.04461 1.05295 1.74154 1.16853 0.79568 0.87956 0.89254 1.20736 1.03531 1.25931 0.91223 0.86504 1.26649 0.93936 0.92692 1.02692 1.69267 1.10450 1.24543 1.30332 0.85892 0.81610 0.79809 0.78295 1.16541 1.18492 1.18659 1.12881 0.84305 1.38126 0.95732 1.24592 0.91198 0.90879 0.91976 1.81074 1.12139 1.16843 1.10078 1.25220 0.92621 0.90822 0.91613 1.81105 1.09368 1.17556 1.12506 0.88360 0.92127 0.92022 0.80324 0.80257 0.74766 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.29 -4.03 9.76 -18.99 -0.19 -4.22 16 3 C 0.31 4.73 7.51 -16.94 -0.13 4.61 16 4 N -0.50 -7.05 9.22 -13.16 -0.12 -7.17 16 5 C 0.14 1.99 10.73 -17.53 -0.19 1.80 16 6 C -0.04 -0.71 6.90 -79.82 -0.55 -1.26 16 7 N 0.00 -0.05 4.98 34.02 0.17 0.12 16 8 O -0.17 -3.09 19.24 -31.57 -0.61 -3.70 16 9 O -0.19 -3.23 19.18 -31.56 -0.61 -3.83 16 10 C -0.07 -1.23 8.39 -39.11 -0.33 -1.56 16 11 C 0.21 3.54 5.27 -83.38 -0.44 3.10 16 12 N -0.63 -10.85 3.31 -7.97 -0.03 -10.88 16 13 C 0.37 6.84 5.03 -83.57 -0.42 6.42 16 14 C -0.39 -7.16 6.62 -37.74 -0.25 -7.41 16 15 H 0.12 2.22 7.30 -52.48 -0.38 1.84 16 16 C 0.07 1.24 5.24 -17.04 -0.09 1.15 16 17 N -0.73 -12.46 10.93 55.65 0.61 -11.86 16 18 Si 0.92 14.26 29.58 -169.99 -5.03 9.24 16 19 H -0.24 -3.91 7.11 56.52 0.40 -3.51 16 20 H -0.26 -3.99 7.11 56.52 0.40 -3.59 16 21 H -0.26 -4.13 7.11 56.52 0.40 -3.72 16 22 C -0.29 -5.86 5.87 -105.11 -0.62 -6.47 16 23 C 0.32 6.90 14.04 -22.48 -0.32 6.58 16 24 N -0.52 -11.72 18.54 41.83 0.78 -10.95 16 25 C 0.31 6.38 14.81 -22.46 -0.33 6.05 16 26 N -0.52 -11.52 18.54 41.85 0.78 -10.75 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.18 2.05 7.58 -52.48 -0.40 1.66 16 31 H 0.18 3.17 5.89 -52.49 -0.31 2.86 16 32 H 0.41 6.93 8.22 -40.82 -0.34 6.59 16 33 H 0.30 4.77 8.28 -40.82 -0.34 4.44 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -23.64 327.00 -3.75 -27.39 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -1.82 Total: 7.21 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -2.61 Total: 14.46 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 2.18 Total: -51.48 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.40 Total: -11.75 kcal Atomic # 14 Polarization: 14.26 SS G_CDS: -5.03 Total: 9.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -23.64 -3.75 -27.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.777 kcal (2) G-P(sol) polarization free energy of solvation -23.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds