Wall clock time and date at job start Tue Mar 31 2020 11:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35760 * 117.00084 * 2 1 4 4 N 1.32133 * 119.72373 * 359.72376 * 3 2 1 5 5 C 1.32010 * 121.71789 * 179.71142 * 4 3 2 6 6 C 1.38074 * 120.98415 * 0.56791 * 5 4 3 7 7 N 1.48022 * 120.32647 * 179.74534 * 6 5 4 8 8 O 1.31699 * 120.00131 * 185.07590 * 7 6 5 9 9 O 1.31695 * 119.99758 * 5.07091 * 7 6 5 10 10 C 1.38730 * 119.35279 * 359.72669 * 6 5 4 11 11 C 1.39007 * 118.41977 * 359.97438 * 10 6 5 12 12 N 1.39948 * 120.51487 * 180.02562 * 11 10 6 13 13 C 1.38213 * 119.99764 * 354.18368 * 12 11 10 14 14 C 1.39501 * 119.99635 * 300.48938 * 13 12 11 15 15 H 1.08003 * 119.99778 * 152.37416 * 14 13 12 16 16 C 1.41824 * 120.00418 * 332.37817 * 14 13 12 17 17 N 1.29800 * 119.99893 * 2.94897 * 16 14 13 18 18 Si 1.86805 * 120.00097 * 182.95170 * 16 14 13 19 19 H 1.48504 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47238 * 119.99746 * 18 16 14 21 21 H 1.48501 * 109.47127 * 239.99993 * 18 16 14 22 22 C 1.40732 * 119.99847 * 120.49103 * 13 12 11 23 23 C 1.43198 * 119.99811 * 174.75690 * 22 13 12 24 24 N 7.55743 * 174.71112 * 123.45039 * 2 1 3 25 25 C 1.43197 * 120.00362 * 354.75910 * 22 13 12 26 26 N 5.13645 * 139.97916 * 112.13463 * 2 1 3 27 27 H 1.08998 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47691 * 299.99999 * 1 2 3 29 29 H 1.09002 * 109.47288 * 60.00438 * 1 2 3 30 30 H 1.08007 * 119.50833 * 180.29428 * 5 4 3 31 31 H 1.08000 * 120.79612 * 180.02562 * 10 6 5 32 32 H 0.96993 * 120.00749 * 174.18709 * 12 11 10 33 33 H 0.97002 * 119.99798 * 185.00525 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3203 2.3143 -0.0055 5 6 1.8783 3.5107 -0.0001 6 6 3.2515 3.6545 -0.0001 7 7 3.8618 5.0031 0.0004 8 8 5.1683 5.1347 -0.1005 9 8 3.0982 6.0713 0.1016 10 6 4.0538 2.5227 -0.0001 11 6 3.4391 1.2760 0.0004 12 7 4.2061 0.1054 0.0010 13 6 5.5809 0.1801 -0.1203 14 6 6.1505 0.7706 -1.2485 15 1 7.1241 1.2333 -1.1824 16 6 5.4510 0.7635 -2.4822 17 7 4.2571 0.2586 -2.5485 18 14 6.2480 1.4807 -4.0120 19 1 7.6012 1.9898 -3.6728 20 1 6.3615 0.4265 -5.0516 21 1 5.4147 2.5966 -4.5274 22 6 6.4060 -0.3396 0.8944 23 6 7.8270 -0.3643 0.7193 24 7 8.9542 -0.3840 0.5812 25 6 5.8246 -0.8439 2.1020 26 7 5.3624 -1.2445 3.0596 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.2513 4.3901 -0.0001 31 1 5.1305 2.6081 0.0004 32 1 3.7731 -0.7582 0.0864 33 1 3.8074 0.1875 -3.4050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:44 Heat of formation + Delta-G solvation = 75.102562 kcal Electronic energy + Delta-G solvation = -25597.057846 eV Core-core repulsion = 21627.792515 eV Total energy + Delta-G solvation = -3969.265331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35307 -40.11800 -39.46001 -38.63209 -37.15931 -36.59255 -35.56605 -35.37256 -33.54641 -32.97534 -30.28566 -28.98772 -28.61026 -27.31943 -25.00966 -23.69816 -22.87704 -20.87233 -19.95582 -19.69454 -19.44765 -18.88747 -18.43100 -17.81099 -17.34889 -16.92312 -16.86632 -16.70011 -15.45656 -15.41764 -15.03198 -14.72479 -14.61528 -14.40156 -14.31447 -13.95607 -13.52657 -13.51225 -13.40340 -13.17331 -12.86837 -12.82929 -12.76156 -12.52007 -12.41833 -12.33797 -12.28834 -11.95384 -11.82996 -11.59295 -11.31934 -10.88076 -9.92084 -9.30569 -8.43461 -7.21807 -1.80227 -0.16103 0.00100 0.03979 0.61015 1.33116 1.42743 1.47855 1.78837 1.97405 2.03760 2.11346 2.19684 2.32333 2.51319 2.57408 2.97936 3.27111 3.32781 3.46557 3.67023 3.80794 4.06132 4.43076 4.46591 4.47246 4.52156 4.62088 4.62671 4.77670 4.93587 5.31461 5.45922 5.64217 5.87726 5.93094 6.07611 6.25783 6.52681 6.72393 7.11619 7.28974 7.64622 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.006623 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.267319 B = 4226.374695 C = 4908.819305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.299 6.299 3 C 0.326 3.674 4 N -0.491 5.491 5 C 0.168 3.832 6 C -0.058 4.058 7 N 0.001 4.999 8 O -0.225 6.225 9 O -0.161 6.161 10 C -0.081 4.081 11 C 0.197 3.803 12 N -0.634 5.634 13 C 0.370 3.630 14 C -0.383 4.383 15 H 0.107 0.893 16 C 0.053 3.947 17 N -0.722 5.722 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.252 1.252 21 H -0.262 1.262 22 C -0.308 4.308 23 C 0.329 3.671 24 N -0.549 5.549 25 C 0.315 3.685 26 N -0.548 5.548 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.212 0.788 31 H 0.164 0.836 32 H 0.415 0.585 33 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 2.485 -5.917 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.204 6.204 3 C 0.141 3.859 4 N -0.216 5.216 5 C 0.008 3.992 6 C -0.149 4.149 7 N 0.474 4.526 8 O -0.406 6.406 9 O -0.361 6.361 10 C -0.111 4.111 11 C 0.089 3.911 12 N -0.255 5.255 13 C 0.266 3.734 14 C -0.411 4.411 15 H 0.125 0.875 16 C -0.178 4.178 17 N -0.341 5.341 18 Si 0.787 3.213 19 H -0.180 1.180 20 H -0.175 1.175 21 H -0.186 1.186 22 C -0.326 4.326 23 C 0.021 3.979 24 N -0.232 5.232 25 C 0.008 3.992 26 N -0.231 5.231 27 H 0.143 0.857 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.181 0.819 32 H 0.254 0.746 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.285 0.824 -4.790 14.146 hybrid contribution 0.998 0.484 -0.877 1.414 sum -12.287 1.308 -5.667 13.594 Atomic orbital electron populations 1.23273 0.74441 1.05370 1.03138 1.86280 1.25445 1.22540 1.86099 1.19771 0.87441 0.86293 0.92361 1.67758 1.37140 0.97083 1.19629 1.22543 0.88985 0.96021 0.91617 1.21087 0.94495 0.79709 1.19641 1.50357 1.02845 1.04189 0.95184 1.96323 0.90390 1.95393 1.58452 1.96197 1.58990 1.26840 1.54023 1.20866 1.02732 0.88239 0.99272 1.17277 0.87552 0.87304 0.98961 1.41241 1.03749 1.05620 1.74876 1.16746 0.80304 0.87658 0.88721 1.20838 1.03240 1.25154 0.91866 0.87470 1.26993 0.94365 0.92999 1.03449 1.69235 1.10361 1.23079 1.31428 0.85255 0.80213 0.79378 0.76478 1.18018 1.17539 1.18614 1.12906 0.83827 1.39740 0.96149 1.24812 0.91441 0.90284 0.91357 1.81057 1.12809 1.18343 1.10963 1.25285 0.92142 0.90317 0.91434 1.81092 1.10083 1.18835 1.13106 0.85680 0.91497 0.91357 0.77189 0.81873 0.74630 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.38 113.37 1.18 1.70 16 2 O -0.30 -7.48 9.76 -90.87 -0.89 -8.37 16 3 C 0.33 9.14 7.51 84.96 0.64 9.78 16 4 N -0.49 -12.36 9.22 -308.42 -2.84 -15.20 16 5 C 0.17 4.16 10.73 84.63 0.91 5.07 16 6 C -0.06 -1.77 6.90 36.45 0.25 -1.52 16 7 N 0.00 0.05 4.98 -46.27 -0.23 -0.18 16 8 O -0.23 -8.65 19.24 3.52 0.07 -8.58 16 9 O -0.16 -5.10 19.18 3.52 0.07 -5.04 16 10 C -0.08 -2.69 8.39 22.57 0.19 -2.50 16 11 C 0.20 6.30 5.27 38.34 0.20 6.50 16 12 N -0.63 -21.39 3.31 -179.12 -0.59 -21.98 16 13 C 0.37 13.87 5.03 39.05 0.20 14.07 16 14 C -0.38 -14.27 6.62 23.46 0.16 -14.11 16 15 H 0.11 4.18 7.30 -2.91 -0.02 4.16 16 16 C 0.05 1.80 5.24 85.88 0.45 2.25 16 17 N -0.72 -23.52 10.93 22.15 0.24 -23.27 16 18 Si 0.97 28.23 29.58 68.60 2.03 30.26 16 19 H -0.26 -8.07 7.11 99.48 0.71 -7.36 16 20 H -0.25 -7.00 7.11 99.48 0.71 -6.29 16 21 H -0.26 -7.63 7.11 99.48 0.71 -6.93 16 22 C -0.31 -12.52 5.87 -20.18 -0.12 -12.64 16 23 C 0.33 14.36 14.04 88.33 1.24 15.60 16 24 N -0.55 -25.28 18.54 19.00 0.35 -24.93 16 25 C 0.31 13.31 14.81 88.33 1.31 14.62 16 26 N -0.55 -24.27 18.54 19.01 0.35 -23.92 16 27 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.05 8.11 -2.39 -0.02 1.04 16 29 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.21 3.87 7.58 -2.91 -0.02 3.85 16 31 H 0.16 5.95 5.89 -2.91 -0.02 5.94 16 32 H 0.41 13.60 8.22 -92.71 -0.76 12.84 16 33 H 0.31 9.12 8.28 -92.71 -0.77 8.35 16 Total: -1.00 -49.98 327.00 5.63 -44.35 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.47 Total: 18.04 kcal Atomic # 6 Polarization: 32.22 SS G_CDS: 6.60 Total: 38.82 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -2.72 Total: -109.49 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.75 Total: -21.98 kcal Atomic # 14 Polarization: 28.23 SS G_CDS: 2.03 Total: 30.26 kcal Total: -49.98 5.63 -44.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.454 kcal (2) G-P(sol) polarization free energy of solvation -49.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds