Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35995 * 117.00116 * 2 1 4 4 C 1.38757 * 120.49628 * 0.23744 * 3 2 1 5 5 C 1.38811 * 118.45295 * 180.26786 * 4 3 2 6 6 C 1.38065 * 119.36823 * 359.73830 * 5 4 3 7 7 N 1.48014 * 119.52598 * 180.02562 * 6 5 4 8 8 O 1.31698 * 120.00418 * 185.90967 * 7 6 5 9 9 O 1.31699 * 119.99667 * 5.91882 * 7 6 5 10 10 N 1.31978 * 120.95523 * 0.02562 * 6 5 4 11 11 C 1.32317 * 121.68418 * 359.97438 * 10 6 5 12 12 N 1.39345 * 119.73459 * 179.97438 * 11 10 6 13 13 C 1.38300 * 119.99663 * 358.75930 * 12 11 10 14 14 C 1.39466 * 120.00433 * 303.16806 * 13 12 11 15 15 H 1.07992 * 120.00379 * 154.40102 * 14 13 12 16 16 C 1.41847 * 119.99744 * 334.39679 * 14 13 12 17 17 N 1.29789 * 119.99984 * 350.67607 * 16 14 13 18 18 Si 1.86796 * 119.99720 * 170.67971 * 16 14 13 19 19 H 1.48494 * 109.47523 * 60.00308 * 18 16 14 20 20 H 1.48504 * 109.46740 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47248 * 299.99700 * 18 16 14 22 22 C 1.40715 * 119.99930 * 123.16621 * 13 12 11 23 23 C 1.43205 * 120.00408 * 173.37714 * 22 13 12 24 24 N 7.53352 * 172.94776 * 121.19057 * 2 1 3 25 25 C 1.43204 * 120.00184 * 353.37998 * 22 13 12 26 26 N 5.02344 * 138.25911 * 115.52625 * 2 1 3 27 27 H 1.08996 * 109.47527 * 59.99438 * 1 2 3 28 28 H 1.08998 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46696 * 299.99794 * 1 2 3 30 30 H 1.08003 * 120.76998 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.31625 * 179.72361 * 5 4 3 32 32 H 0.96997 * 120.00225 * 179.03944 * 12 11 10 33 33 H 0.96998 * 120.00130 * 185.04931 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3008 2.3819 0.0050 5 6 1.9747 3.5955 -0.0010 6 6 3.3553 3.6033 -0.0060 7 7 4.0774 4.8953 -0.0117 8 8 5.3885 4.9165 -0.1340 9 8 3.4087 6.0239 0.1056 10 7 4.0405 2.4754 -0.0058 11 6 3.4391 1.2968 -0.0003 12 7 4.2027 0.1312 -0.0008 13 6 5.5831 0.2090 -0.0330 14 6 6.2191 0.8934 -1.0685 15 1 7.2013 1.3150 -0.9140 16 6 5.5759 1.0356 -2.3247 17 7 4.4830 0.3807 -2.5721 18 14 6.3019 2.1655 -3.6230 19 1 7.6702 1.7051 -3.9708 20 1 5.4467 2.1385 -4.8368 21 1 6.3655 3.5514 -3.0936 22 6 6.3461 -0.4024 0.9790 23 6 7.7735 -0.4452 0.8727 24 7 8.9055 -0.4790 0.7912 25 6 5.6951 -0.9820 2.1152 26 7 5.1772 -1.4412 3.0180 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.2213 2.3493 0.0093 31 1 1.4242 4.5247 -0.0018 32 1 3.7660 -0.7347 0.0173 33 1 4.0831 0.4204 -3.4549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = 99.839937 kcal Electronic energy + Delta-G solvation = -25722.280761 eV Core-core repulsion = 21754.088123 eV Total energy + Delta-G solvation = -3968.192638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.16593 -38.94078 -38.14673 -37.16375 -35.31047 -34.72618 -34.13025 -33.85165 -32.15596 -31.52605 -29.29226 -28.18050 -27.10698 -25.99547 -23.65091 -22.49639 -21.39197 -19.30525 -18.93250 -18.29686 -17.96386 -17.31966 -16.90970 -16.36268 -16.18591 -15.93618 -15.67753 -15.29028 -14.57432 -14.06625 -13.82036 -13.59058 -13.46286 -12.84240 -12.60676 -12.32579 -11.85671 -11.81293 -11.71890 -11.69281 -11.64631 -11.52748 -11.17122 -11.11008 -10.95304 -10.93387 -10.87686 -10.41853 -10.34307 -10.08535 -9.80249 -9.60309 -8.36172 -7.85263 -7.13706 -5.42594 -0.45313 1.03800 1.18223 1.28293 2.17191 2.71912 2.75512 2.86159 2.91558 3.33781 3.45541 3.59499 3.83388 4.03253 4.15616 4.25455 4.31050 4.41081 4.56314 4.86915 4.89160 4.90765 5.15358 5.21238 5.30541 5.56354 5.57915 5.65487 6.13665 6.17041 6.31370 6.65209 6.85044 7.03988 7.17460 7.41355 7.67691 7.72902 8.07943 8.36112 8.91649 9.12834 9.15630 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.007217 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.603358 B = 3878.679080 C = 4908.169505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.081 3.919 4 C -0.142 4.142 5 C -0.120 4.120 6 C 0.218 3.782 7 N -0.016 5.016 8 O -0.116 6.116 9 O -0.195 6.195 10 N -0.445 5.445 11 C 0.453 3.547 12 N -0.617 5.617 13 C 0.373 3.627 14 C -0.345 4.345 15 H 0.115 0.885 16 C 0.080 3.920 17 N -0.735 5.735 18 Si 0.913 3.087 19 H -0.248 1.248 20 H -0.271 1.271 21 H -0.241 1.241 22 C -0.304 4.304 23 C 0.326 3.674 24 N -0.529 5.529 25 C 0.308 3.692 26 N -0.535 5.535 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.420 0.580 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 3.039 -4.991 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.026 3.974 4 C -0.168 4.168 5 C -0.147 4.147 6 C 0.000 4.000 7 N 0.466 4.534 8 O -0.323 6.323 9 O -0.377 6.377 10 N -0.168 5.168 11 C 0.209 3.791 12 N -0.242 5.242 13 C 0.270 3.730 14 C -0.373 4.373 15 H 0.133 0.867 16 C -0.150 4.150 17 N -0.354 5.354 18 Si 0.733 3.267 19 H -0.172 1.172 20 H -0.196 1.196 21 H -0.164 1.164 22 C -0.322 4.322 23 C 0.018 3.982 24 N -0.210 5.210 25 C 0.001 3.999 26 N -0.217 5.217 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.259 0.741 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.293 1.613 -3.848 13.932 hybrid contribution -1.114 0.766 -1.068 1.723 sum -14.407 2.380 -4.916 15.407 Atomic orbital electron populations 1.23182 0.77616 1.04712 1.01504 1.86140 1.21914 1.24867 1.87708 1.19630 0.91433 0.86172 1.00184 1.21284 1.00975 0.89908 1.04588 1.21165 0.91223 1.00419 1.01929 1.19877 0.86910 0.83378 1.09788 1.50283 1.03213 1.03120 0.96795 1.96325 0.89015 1.96122 1.50850 1.96229 1.68005 1.16760 1.56730 1.65844 1.38644 0.95292 1.17021 1.16908 0.83919 0.85651 0.92624 1.41493 1.04764 1.04367 1.73535 1.16652 0.79145 0.88192 0.88980 1.20490 1.02611 1.21411 0.92778 0.86688 1.26622 0.93213 0.94095 1.01111 1.69207 1.13765 1.28021 1.24404 0.86152 0.80874 0.81953 0.77679 1.17192 1.19585 1.16404 1.12721 0.83858 1.35328 1.00307 1.24567 0.91190 0.90724 0.91726 1.81032 1.12214 1.16884 1.10920 1.25308 0.92490 0.90633 0.91484 1.81127 1.09773 1.17944 1.12901 0.92231 0.87583 0.92291 0.82382 0.82418 0.74065 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.17 16 2 O -0.30 -3.59 9.74 -19.73 -0.19 -3.78 16 3 C 0.08 1.11 6.73 -38.91 -0.26 0.85 16 4 C -0.14 -1.57 9.14 -39.18 -0.36 -1.92 16 5 C -0.12 -1.56 9.61 -39.43 -0.38 -1.94 16 6 C 0.22 3.77 7.80 -146.16 -1.14 2.63 16 7 N -0.02 -0.30 4.98 32.86 0.16 -0.13 16 8 O -0.12 -2.43 19.76 -31.57 -0.62 -3.06 16 9 O -0.19 -3.46 19.13 -31.57 -0.60 -4.07 16 10 N -0.44 -8.50 8.25 -9.31 -0.08 -8.58 16 11 C 0.45 7.92 6.13 -154.60 -0.95 6.98 16 12 N -0.62 -11.41 3.40 -9.61 -0.03 -11.44 16 13 C 0.37 7.76 5.51 -83.55 -0.46 7.30 16 14 C -0.35 -7.28 7.47 -37.75 -0.28 -7.56 16 15 H 0.12 2.52 7.28 -52.49 -0.38 2.14 16 16 C 0.08 1.56 4.85 -17.04 -0.08 1.47 16 17 N -0.73 -13.59 11.31 55.65 0.63 -12.96 16 18 Si 0.91 15.86 29.59 -169.99 -5.03 10.84 16 19 H -0.25 -4.33 7.11 56.52 0.40 -3.93 16 20 H -0.27 -4.48 7.11 56.52 0.40 -4.08 16 21 H -0.24 -4.49 7.11 56.52 0.40 -4.09 16 22 C -0.30 -6.66 5.87 -105.11 -0.62 -7.28 16 23 C 0.33 7.57 14.03 -22.49 -0.32 7.26 16 24 N -0.53 -12.76 18.53 41.81 0.77 -11.99 16 25 C 0.31 6.87 14.82 -22.42 -0.33 6.54 16 26 N -0.53 -12.32 18.55 41.90 0.78 -11.55 16 27 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.34 7.69 -51.92 -0.40 -0.06 16 30 H 0.16 1.08 6.44 -52.48 -0.34 0.74 16 31 H 0.16 1.65 7.57 -52.49 -0.40 1.25 16 32 H 0.42 7.30 8.16 -40.82 -0.33 6.97 16 33 H 0.30 5.10 8.28 -40.82 -0.34 4.76 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -27.23 327.61 -5.27 -32.50 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -1.81 Total: 3.78 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: -4.18 Total: 15.50 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 2.24 Total: -56.65 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.42 Total: -10.90 kcal Atomic # 14 Polarization: 15.86 SS G_CDS: -5.03 Total: 10.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.23 -5.27 -32.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.338 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds