Wall clock time and date at job start Tue Mar 31 2020 11:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35995 * 117.00116 * 2 1 4 4 C 1.38757 * 120.49628 * 0.23744 * 3 2 1 5 5 C 1.38811 * 118.45295 * 180.26786 * 4 3 2 6 6 C 1.38065 * 119.36823 * 359.73830 * 5 4 3 7 7 N 1.48014 * 119.52598 * 180.02562 * 6 5 4 8 8 O 1.31698 * 120.00418 * 185.90967 * 7 6 5 9 9 O 1.31699 * 119.99667 * 5.91882 * 7 6 5 10 10 N 1.31978 * 120.95523 * 0.02562 * 6 5 4 11 11 C 1.32317 * 121.68418 * 359.97438 * 10 6 5 12 12 N 1.39345 * 119.73459 * 179.97438 * 11 10 6 13 13 C 1.38300 * 119.99663 * 358.75930 * 12 11 10 14 14 C 1.39466 * 120.00433 * 303.16806 * 13 12 11 15 15 H 1.07992 * 120.00379 * 154.40102 * 14 13 12 16 16 C 1.41847 * 119.99744 * 334.39679 * 14 13 12 17 17 N 1.29789 * 119.99984 * 350.67607 * 16 14 13 18 18 Si 1.86796 * 119.99720 * 170.67971 * 16 14 13 19 19 H 1.48494 * 109.47523 * 60.00308 * 18 16 14 20 20 H 1.48504 * 109.46740 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47248 * 299.99700 * 18 16 14 22 22 C 1.40715 * 119.99930 * 123.16621 * 13 12 11 23 23 C 1.43205 * 120.00408 * 173.37714 * 22 13 12 24 24 N 7.53352 * 172.94776 * 121.19057 * 2 1 3 25 25 C 1.43204 * 120.00184 * 353.37998 * 22 13 12 26 26 N 5.02344 * 138.25911 * 115.52625 * 2 1 3 27 27 H 1.08996 * 109.47527 * 59.99438 * 1 2 3 28 28 H 1.08998 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46696 * 299.99794 * 1 2 3 30 30 H 1.08003 * 120.76998 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.31625 * 179.72361 * 5 4 3 32 32 H 0.96997 * 120.00225 * 179.03944 * 12 11 10 33 33 H 0.96998 * 120.00130 * 185.04931 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3008 2.3819 0.0050 5 6 1.9747 3.5955 -0.0010 6 6 3.3553 3.6033 -0.0060 7 7 4.0774 4.8953 -0.0117 8 8 5.3885 4.9165 -0.1340 9 8 3.4087 6.0239 0.1056 10 7 4.0405 2.4754 -0.0058 11 6 3.4391 1.2968 -0.0003 12 7 4.2027 0.1312 -0.0008 13 6 5.5831 0.2090 -0.0330 14 6 6.2191 0.8934 -1.0685 15 1 7.2013 1.3150 -0.9140 16 6 5.5759 1.0356 -2.3247 17 7 4.4830 0.3807 -2.5721 18 14 6.3019 2.1655 -3.6230 19 1 7.6702 1.7051 -3.9708 20 1 5.4467 2.1385 -4.8368 21 1 6.3655 3.5514 -3.0936 22 6 6.3461 -0.4024 0.9790 23 6 7.7735 -0.4452 0.8727 24 7 8.9055 -0.4790 0.7912 25 6 5.6951 -0.9820 2.1152 26 7 5.1772 -1.4412 3.0180 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.2213 2.3493 0.0093 31 1 1.4242 4.5247 -0.0018 32 1 3.7660 -0.7347 0.0173 33 1 4.0831 0.4204 -3.4549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:55 Heat of formation + Delta-G solvation = 84.708123 kcal Electronic energy + Delta-G solvation = -25722.936926 eV Core-core repulsion = 21754.088123 eV Total energy + Delta-G solvation = -3968.848803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31036 -40.12445 -39.42740 -38.57213 -37.01950 -36.54483 -35.51593 -35.32458 -33.36915 -32.86846 -30.69687 -29.05820 -28.69201 -27.10715 -24.87618 -23.69507 -22.86287 -20.86969 -20.22065 -19.43618 -19.22813 -18.87100 -18.23975 -17.66717 -17.46357 -17.24658 -16.77235 -16.60724 -15.60166 -15.34810 -14.90605 -14.82136 -14.59462 -14.39400 -14.29293 -13.95266 -13.50622 -13.42462 -13.28803 -13.22219 -12.78310 -12.74996 -12.60150 -12.49235 -12.45868 -12.25558 -12.23830 -11.85906 -11.80088 -11.58332 -11.00836 -10.72147 -9.84338 -9.32753 -8.52637 -7.11981 -1.80274 -0.09942 -0.05192 0.07710 0.66862 1.27585 1.31658 1.46453 1.95501 1.98085 2.03793 2.06959 2.20082 2.39430 2.50941 2.61741 3.12843 3.37718 3.39729 3.53401 3.68257 3.90056 4.20680 4.34319 4.47570 4.55732 4.61150 4.63358 4.64954 4.85119 4.96749 5.34977 5.42043 5.54143 5.88191 6.00993 6.12396 6.31936 6.58565 6.99834 7.15153 7.32173 7.65352 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.007217 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.603358 B = 3878.679080 C = 4908.169505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.101 3.899 4 C -0.125 4.125 5 C -0.081 4.081 6 C 0.174 3.826 7 N -0.009 5.009 8 O -0.226 6.226 9 O -0.142 6.142 10 N -0.485 5.485 11 C 0.424 3.576 12 N -0.623 5.623 13 C 0.377 3.623 14 C -0.354 4.354 15 H 0.094 0.906 16 C 0.065 3.935 17 N -0.722 5.722 18 Si 0.951 3.049 19 H -0.251 1.251 20 H -0.245 1.245 21 H -0.269 1.269 22 C -0.321 4.321 23 C 0.329 3.671 24 N -0.556 5.556 25 C 0.317 3.683 26 N -0.552 5.552 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.216 0.784 31 H 0.194 0.806 32 H 0.422 0.578 33 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.527 3.281 -6.067 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.046 3.954 4 C -0.150 4.150 5 C -0.108 4.108 6 C -0.042 4.042 7 N 0.466 4.534 8 O -0.406 6.406 9 O -0.344 6.344 10 N -0.208 5.208 11 C 0.181 3.819 12 N -0.251 5.251 13 C 0.273 3.727 14 C -0.382 4.382 15 H 0.112 0.888 16 C -0.167 4.167 17 N -0.341 5.341 18 Si 0.771 3.229 19 H -0.175 1.175 20 H -0.168 1.168 21 H -0.194 1.194 22 C -0.340 4.340 23 C 0.022 3.978 24 N -0.240 5.240 25 C 0.011 3.989 26 N -0.235 5.235 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.099 0.901 30 H 0.233 0.767 31 H 0.211 0.789 32 H 0.262 0.738 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.955 1.780 -4.959 18.712 hybrid contribution -0.105 0.735 -0.764 1.065 sum -18.060 2.516 -5.722 19.111 Atomic orbital electron populations 1.23665 0.74488 1.06703 1.03626 1.86164 1.25024 1.24052 1.86731 1.19712 0.90222 0.87968 0.97483 1.21899 1.03267 0.87636 1.02217 1.21741 0.89113 1.02767 0.97153 1.20227 0.88044 0.82261 1.13635 1.50627 1.03157 1.03893 0.95762 1.96357 0.90012 1.96402 1.57807 1.96151 1.67587 1.17879 1.52739 1.65506 1.40799 0.96436 1.18075 1.17169 0.85520 0.84711 0.94543 1.41297 1.03608 1.05095 1.75084 1.16538 0.80570 0.87510 0.88104 1.20505 1.02093 1.21560 0.94002 0.88797 1.26837 0.93776 0.94884 1.01210 1.69149 1.12944 1.26780 1.25227 0.85616 0.80896 0.79228 0.77170 1.17493 1.16810 1.19423 1.12836 0.83350 1.36759 1.01074 1.24856 0.91555 0.90199 0.91160 1.80999 1.12849 1.18295 1.11816 1.25286 0.92158 0.90242 0.91245 1.81104 1.10278 1.18857 1.13254 0.89894 0.86028 0.90119 0.76699 0.78867 0.73759 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.83 113.37 1.11 1.19 16 2 O -0.31 -6.25 9.74 -93.50 -0.91 -7.16 16 3 C 0.10 2.43 6.73 22.71 0.15 2.59 16 4 C -0.12 -2.03 9.14 22.53 0.21 -1.82 16 5 C -0.08 -1.73 9.61 22.37 0.21 -1.51 16 6 C 0.17 5.82 7.80 129.57 1.01 6.83 16 7 N -0.01 -0.35 4.98 -49.94 -0.25 -0.60 16 8 O -0.23 -10.31 19.76 3.52 0.07 -10.24 16 9 O -0.14 -4.75 19.13 3.52 0.07 -4.68 16 10 N -0.48 -18.64 8.25 -183.36 -1.51 -20.15 16 11 C 0.42 14.39 6.13 133.07 0.82 15.21 16 12 N -0.62 -23.06 3.40 -184.31 -0.63 -23.69 16 13 C 0.38 16.19 5.51 39.02 0.22 16.41 16 14 C -0.35 -15.58 7.47 23.46 0.18 -15.41 16 15 H 0.09 4.45 7.28 -2.91 -0.02 4.43 16 16 C 0.06 2.52 4.85 85.89 0.42 2.93 16 17 N -0.72 -25.87 11.31 22.16 0.25 -25.62 16 18 Si 0.95 32.86 29.59 68.60 2.03 34.89 16 19 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 20 H -0.25 -7.40 7.11 99.48 0.71 -6.69 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 C -0.32 -14.65 5.87 -20.18 -0.12 -14.77 16 23 C 0.33 16.00 14.03 88.34 1.24 17.24 16 24 N -0.56 -28.07 18.53 19.00 0.35 -27.71 16 25 C 0.32 14.46 14.82 88.32 1.31 15.77 16 26 N -0.55 -25.65 18.55 19.02 0.35 -25.30 16 27 H 0.08 0.37 7.71 -2.39 -0.02 0.35 16 28 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.39 7.69 -2.38 -0.02 0.37 16 30 H 0.22 1.06 6.44 -2.91 -0.02 1.04 16 31 H 0.19 2.76 7.57 -2.91 -0.02 2.73 16 32 H 0.42 14.56 8.16 -92.71 -0.76 13.81 16 33 H 0.31 9.90 8.28 -92.71 -0.77 9.13 16 Total: -1.00 -64.69 327.61 7.05 -57.64 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.48 Total: 7.97 kcal Atomic # 6 Polarization: 37.90 SS G_CDS: 6.75 Total: 44.65 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -1.43 Total: -123.07 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.77 Total: -22.08 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 2.03 Total: 34.89 kcal Total: -64.69 7.05 -57.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.349 kcal (2) G-P(sol) polarization free energy of solvation -64.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds