Wall clock time and date at job start Tue Mar 31 2020 11:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.43190 * 120.00016 * 207.62516 * 3 2 1 5 5 N 3.51031 * 140.69048 * 207.62673 * 2 1 3 6 6 C 1.41131 * 119.99563 * 27.62273 * 3 2 1 7 7 C 1.38938 * 120.00549 * 354.75516 * 6 3 2 8 8 H 1.08000 * 119.99978 * 331.99580 * 7 6 3 9 9 C 1.40866 * 120.00157 * 151.99534 * 7 6 3 10 10 N 1.30316 * 120.00243 * 2.67721 * 9 7 6 11 11 Si 1.86806 * 120.00086 * 182.67865 * 9 7 6 12 12 H 1.48506 * 109.46838 * 89.99703 * 11 9 7 13 13 H 1.48497 * 109.46947 * 210.00020 * 11 9 7 14 14 H 1.48498 * 109.47027 * 330.00035 * 11 9 7 15 15 N 1.38448 * 119.99339 * 174.75479 * 6 3 2 16 16 C 1.38506 * 119.99955 * 121.27885 * 15 6 3 17 17 N 1.31531 * 119.34521 * 355.18986 * 16 15 6 18 18 C 1.33800 * 121.65263 * 179.97438 * 17 16 15 19 19 C 1.40542 * 120.71057 * 180.02562 * 18 17 16 20 20 C 1.36150 * 119.82596 * 179.70413 * 19 18 17 21 21 C 1.39325 * 121.06615 * 0.25016 * 20 19 18 22 22 C 1.36158 * 120.83424 * 0.04780 * 21 20 19 23 23 C 1.40517 * 119.65227 * 359.97438 * 22 21 20 24 24 C 1.40603 * 121.10868 * 180.02562 * 23 22 21 25 25 C 1.38870 * 118.08892 * 179.07680 * 24 23 22 26 26 C 1.43198 * 120.30862 * 180.28732 * 25 24 23 27 27 N 7.00922 * 165.67384 * 82.97564 * 2 1 3 28 28 H 0.97002 * 120.00577 * 185.00994 * 10 9 7 29 29 H 0.97001 * 120.00032 * 301.27195 * 15 6 3 30 30 H 1.07995 * 120.08952 * 359.97306 * 19 18 17 31 31 H 1.07995 * 119.46380 * 180.27915 * 20 19 18 32 32 H 1.08006 * 119.57631 * 180.02562 * 21 20 19 33 33 H 1.08008 * 120.17717 * 179.97438 * 22 21 20 34 34 H 1.08001 * 120.94817 * 359.95631 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.0997 0.5750 5 7 3.8520 1.9703 1.0312 6 6 3.2740 -1.0820 -0.5667 7 6 2.5842 -2.1972 -1.0260 8 1 1.6371 -2.4668 -0.5824 9 6 3.1201 -2.9762 -2.0702 10 7 4.2870 -2.6817 -2.5701 11 14 2.1580 -4.4314 -2.7384 12 1 1.2893 -3.9797 -3.8549 13 1 3.1031 -5.4644 -3.2331 14 1 1.3168 -5.0066 -1.6582 15 7 4.6541 -1.0327 -0.6650 16 6 5.4272 -2.0043 -0.0511 17 7 4.8439 -2.9126 0.7003 18 6 5.5458 -3.8721 1.3143 19 6 4.9019 -4.8333 2.1124 20 6 5.6331 -5.8053 2.7241 21 6 7.0174 -5.8633 2.5774 22 6 7.6777 -4.9466 1.8175 23 6 6.9553 -3.9289 1.1718 24 6 7.6059 -2.9669 0.3793 25 6 6.8286 -2.0006 -0.2458 26 6 7.4412 -1.0017 -1.0689 27 7 7.9272 -0.2121 -1.7214 28 1 4.6241 -3.1718 -3.3363 29 1 5.0797 -0.3179 -1.1638 30 1 3.8296 -4.8034 2.2367 31 1 5.1319 -6.5436 3.3324 32 1 7.5737 -6.6452 3.0732 33 1 8.7512 -5.0014 1.7114 34 1 8.6778 -2.9875 0.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:48 Heat of formation + Delta-G solvation = 147.382315 kcal Electronic energy + Delta-G solvation = -24268.766480 eV Core-core repulsion = 20745.777448 eV Total energy + Delta-G solvation = -3522.989032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66482 -38.30608 -36.76892 -35.94484 -35.10896 -34.72617 -33.56065 -33.16343 -31.14162 -30.03066 -28.68231 -27.13095 -24.64914 -23.45287 -22.03620 -21.31480 -19.58861 -19.03419 -18.22982 -17.44713 -16.57270 -16.32527 -15.68256 -15.46518 -14.77291 -14.47327 -14.08925 -13.92485 -13.70767 -13.22316 -13.17148 -12.90968 -12.83059 -12.61000 -12.50007 -12.30891 -11.97096 -11.88220 -11.71388 -11.57071 -11.49225 -11.44618 -11.33784 -11.01518 -10.94020 -10.62731 -10.29375 -10.07495 -9.68358 -9.10518 -8.33576 -8.11003 -7.75334 -7.03653 -5.42612 0.38367 1.07658 2.04230 2.14591 2.71242 2.77736 2.80896 2.84677 3.03764 3.41087 3.54146 3.58844 3.85547 4.00769 4.04861 4.24213 4.30110 4.47204 4.66114 4.75651 4.96832 5.04596 5.16000 5.20846 5.27042 5.46672 5.57820 5.82810 5.86957 5.92343 6.16343 6.23142 6.33644 6.46672 6.55353 6.59572 6.93095 7.05637 7.24981 7.51930 7.64923 7.74921 7.91282 8.19544 8.64469 8.93424 9.12308 9.22225 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.006069 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.111442 B = 4612.531368 C = 5332.086829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.327 3.673 3 C -0.305 4.305 4 C 0.307 3.693 5 N -0.532 5.532 6 C 0.384 3.616 7 C -0.348 4.348 8 H 0.112 0.888 9 C 0.075 3.925 10 N -0.739 5.739 11 Si 0.929 3.071 12 H -0.258 1.258 13 H -0.269 1.269 14 H -0.247 1.247 15 N -0.625 5.625 16 C 0.502 3.498 17 N -0.514 5.514 18 C 0.211 3.789 19 C -0.113 4.113 20 C -0.084 4.084 21 C -0.153 4.153 22 C -0.068 4.068 23 C -0.166 4.166 24 C 0.028 3.972 25 C -0.121 4.121 26 C 0.265 3.735 27 N -0.421 5.421 28 H 0.300 0.700 29 H 0.406 0.594 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 -13.439 2.572 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.019 3.981 3 C -0.323 4.323 4 C -0.001 4.001 5 N -0.214 5.214 6 C 0.281 3.719 7 C -0.376 4.376 8 H 0.130 0.870 9 C -0.154 4.154 10 N -0.359 5.359 11 Si 0.750 3.250 12 H -0.183 1.183 13 H -0.193 1.193 14 H -0.170 1.170 15 N -0.247 5.247 16 C 0.251 3.749 17 N -0.232 5.232 18 C 0.084 3.916 19 C -0.132 4.132 20 C -0.105 4.105 21 C -0.172 4.172 22 C -0.087 4.087 23 C -0.171 4.171 24 C 0.000 4.000 25 C -0.131 4.131 26 C -0.050 4.050 27 N -0.097 5.097 28 H 0.112 0.888 29 H 0.244 0.756 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.817 -10.946 2.262 13.640 hybrid contribution 0.874 -0.993 -0.780 1.536 sum 8.691 -11.939 1.482 14.841 Atomic orbital electron populations 1.81055 1.12161 1.11255 1.16826 1.24598 0.91209 0.91618 0.90651 1.12906 0.83195 0.99544 1.36657 1.25232 0.92530 0.91594 0.90701 1.81055 1.09787 1.12997 1.17584 1.16691 0.79469 0.90577 0.85187 1.20153 1.04239 1.03905 1.09323 0.86981 1.26532 0.94407 0.98319 0.96174 1.69463 1.14760 1.34847 1.16784 0.85884 0.80021 0.78632 0.80454 1.18283 1.19309 1.17009 1.41569 1.05004 1.26025 1.52078 1.17803 0.84579 0.86367 0.86107 1.67782 1.36728 1.05217 1.13433 1.18739 0.88645 0.91949 0.92270 1.20791 1.00831 0.94134 0.97484 1.20871 0.94023 0.97526 0.98035 1.20702 0.94612 1.00340 1.01563 1.20861 0.99189 0.93289 0.95401 1.18511 0.94552 0.99476 1.04539 1.21536 0.99393 0.89469 0.89636 1.16410 0.92631 0.98568 1.05479 1.25225 0.93706 0.93013 0.93027 1.81125 1.08206 1.10150 1.10231 0.88765 0.75565 0.84581 0.85834 0.86208 0.85830 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.55 18.54 41.84 0.78 -11.77 16 2 C 0.33 7.47 14.05 -22.47 -0.32 7.15 16 3 C -0.30 -6.68 5.88 -104.95 -0.62 -7.29 16 4 C 0.31 6.99 14.82 -22.49 -0.33 6.65 16 5 N -0.53 -12.63 18.53 41.82 0.78 -11.86 16 6 C 0.38 7.96 5.45 -83.52 -0.46 7.50 16 7 C -0.35 -7.06 7.46 -38.33 -0.29 -7.35 16 8 H 0.11 2.31 7.29 -52.49 -0.38 1.93 16 9 C 0.08 1.41 5.30 -17.20 -0.09 1.32 16 10 N -0.74 -13.80 10.90 55.60 0.61 -13.19 16 11 Si 0.93 14.92 29.57 -169.99 -5.03 9.89 16 12 H -0.26 -4.22 7.11 56.52 0.40 -3.82 16 13 H -0.27 -4.23 7.11 56.52 0.40 -3.83 16 14 H -0.25 -4.02 7.11 56.52 0.40 -3.62 16 15 N -0.62 -12.07 3.23 -9.48 -0.03 -12.10 16 16 C 0.50 9.02 5.96 -155.34 -0.93 8.10 16 17 N -0.51 -9.28 8.80 -9.93 -0.09 -9.37 16 18 C 0.21 3.26 6.61 -84.79 -0.56 2.70 16 19 C -0.11 -1.50 9.97 -39.46 -0.39 -1.89 16 20 C -0.08 -0.88 9.94 -39.93 -0.40 -1.27 16 21 C -0.15 -1.46 9.96 -39.93 -0.40 -1.86 16 22 C -0.07 -0.70 9.76 -39.47 -0.39 -1.08 16 23 C -0.17 -2.18 5.74 -106.79 -0.61 -2.79 16 24 C 0.03 0.35 9.63 -38.46 -0.37 -0.02 16 25 C -0.12 -1.88 5.76 -106.50 -0.61 -2.50 16 26 C 0.27 4.33 14.05 -22.55 -0.32 4.01 16 27 N -0.42 -7.44 18.52 41.75 0.77 -6.66 16 28 H 0.30 5.17 8.29 -40.82 -0.34 4.83 16 29 H 0.41 7.82 7.62 -40.82 -0.31 7.51 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 333.26 15.07 5.02 5.02 Total: -1.00 -25.81 333.26 -6.21 -32.02 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -1.94 Total: 6.64 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: -7.07 Total: 11.38 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 2.81 Total: -64.96 kcal Atomic # 14 Polarization: 14.92 SS G_CDS: -5.03 Total: 9.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.81 -6.21 -32.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.402 kcal (2) G-P(sol) polarization free energy of solvation -25.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds