Wall clock time and date at job start Tue Mar 31 2020 11:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.43190 * 120.00016 * 207.62516 * 3 2 1 5 5 N 3.51031 * 140.69048 * 207.62673 * 2 1 3 6 6 C 1.41131 * 119.99563 * 27.62273 * 3 2 1 7 7 C 1.38938 * 120.00549 * 354.75516 * 6 3 2 8 8 H 1.08000 * 119.99978 * 331.99580 * 7 6 3 9 9 C 1.40866 * 120.00157 * 151.99534 * 7 6 3 10 10 N 1.30316 * 120.00243 * 2.67721 * 9 7 6 11 11 Si 1.86806 * 120.00086 * 182.67865 * 9 7 6 12 12 H 1.48506 * 109.46838 * 89.99703 * 11 9 7 13 13 H 1.48497 * 109.46947 * 210.00020 * 11 9 7 14 14 H 1.48498 * 109.47027 * 330.00035 * 11 9 7 15 15 N 1.38448 * 119.99339 * 174.75479 * 6 3 2 16 16 C 1.38506 * 119.99955 * 121.27885 * 15 6 3 17 17 N 1.31531 * 119.34521 * 355.18986 * 16 15 6 18 18 C 1.33800 * 121.65263 * 179.97438 * 17 16 15 19 19 C 1.40542 * 120.71057 * 180.02562 * 18 17 16 20 20 C 1.36150 * 119.82596 * 179.70413 * 19 18 17 21 21 C 1.39325 * 121.06615 * 0.25016 * 20 19 18 22 22 C 1.36158 * 120.83424 * 0.04780 * 21 20 19 23 23 C 1.40517 * 119.65227 * 359.97438 * 22 21 20 24 24 C 1.40603 * 121.10868 * 180.02562 * 23 22 21 25 25 C 1.38870 * 118.08892 * 179.07680 * 24 23 22 26 26 C 1.43198 * 120.30862 * 180.28732 * 25 24 23 27 27 N 7.00922 * 165.67384 * 82.97564 * 2 1 3 28 28 H 0.97002 * 120.00577 * 185.00994 * 10 9 7 29 29 H 0.97001 * 120.00032 * 301.27195 * 15 6 3 30 30 H 1.07995 * 120.08952 * 359.97306 * 19 18 17 31 31 H 1.07995 * 119.46380 * 180.27915 * 20 19 18 32 32 H 1.08006 * 119.57631 * 180.02562 * 21 20 19 33 33 H 1.08008 * 120.17717 * 179.97438 * 22 21 20 34 34 H 1.08001 * 120.94817 * 359.95631 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.0997 0.5750 5 7 3.8520 1.9703 1.0312 6 6 3.2740 -1.0820 -0.5667 7 6 2.5842 -2.1972 -1.0260 8 1 1.6371 -2.4668 -0.5824 9 6 3.1201 -2.9762 -2.0702 10 7 4.2870 -2.6817 -2.5701 11 14 2.1580 -4.4314 -2.7384 12 1 1.2893 -3.9797 -3.8549 13 1 3.1031 -5.4644 -3.2331 14 1 1.3168 -5.0066 -1.6582 15 7 4.6541 -1.0327 -0.6650 16 6 5.4272 -2.0043 -0.0511 17 7 4.8439 -2.9126 0.7003 18 6 5.5458 -3.8721 1.3143 19 6 4.9019 -4.8333 2.1124 20 6 5.6331 -5.8053 2.7241 21 6 7.0174 -5.8633 2.5774 22 6 7.6777 -4.9466 1.8175 23 6 6.9553 -3.9289 1.1718 24 6 7.6059 -2.9669 0.3793 25 6 6.8286 -2.0006 -0.2458 26 6 7.4412 -1.0017 -1.0689 27 7 7.9272 -0.2121 -1.7214 28 1 4.6241 -3.1718 -3.3363 29 1 5.0797 -0.3179 -1.1638 30 1 3.8296 -4.8034 2.2367 31 1 5.1319 -6.5436 3.3324 32 1 7.5737 -6.6452 3.0732 33 1 8.7512 -5.0014 1.7114 34 1 8.6778 -2.9875 0.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:47 Heat of formation + Delta-G solvation = 136.039903 kcal Electronic energy + Delta-G solvation = -24269.258324 eV Core-core repulsion = 20745.777448 eV Total energy + Delta-G solvation = -3523.480876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76958 -39.55236 -38.12704 -37.32190 -36.65223 -36.51912 -34.97225 -34.25762 -32.54214 -31.06847 -29.85334 -28.76334 -25.70445 -24.66658 -23.10139 -22.66581 -20.85450 -20.43241 -19.43760 -19.02079 -17.85257 -17.73596 -16.83858 -16.58130 -15.95183 -15.66838 -15.22068 -14.96969 -14.92214 -14.61887 -14.41539 -14.35741 -14.27326 -13.95517 -13.89252 -13.73033 -13.48761 -13.42841 -13.34195 -13.17700 -12.89704 -12.72449 -12.53824 -12.35020 -12.23648 -12.01128 -11.51006 -11.33789 -10.91544 -10.26368 -9.69554 -9.28444 -9.11946 -8.35578 -7.09650 -0.61460 -0.02631 0.68216 1.08874 1.36695 1.50161 1.52241 1.58266 1.87049 2.01771 2.08526 2.16714 2.21264 2.47357 2.56091 2.69788 2.83995 3.34654 3.43120 3.60612 3.79354 3.82865 3.99429 4.15695 4.24349 4.46691 4.57107 4.59659 4.72465 4.83705 4.92323 5.02224 5.28203 5.41475 5.54956 5.59455 5.71440 5.74564 6.00364 6.10015 6.21643 6.41559 6.47071 6.69962 7.15493 7.31545 7.42122 7.75754 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.006069 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.111442 B = 4612.531368 C = 5332.086829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C 0.332 3.668 3 C -0.324 4.324 4 C 0.315 3.685 5 N -0.558 5.558 6 C 0.380 3.620 7 C -0.346 4.346 8 H 0.103 0.897 9 C 0.051 3.949 10 N -0.737 5.737 11 Si 0.980 3.020 12 H -0.259 1.259 13 H -0.257 1.257 14 H -0.252 1.252 15 N -0.635 5.635 16 C 0.484 3.516 17 N -0.545 5.545 18 C 0.182 3.818 19 C -0.145 4.145 20 C -0.065 4.065 21 C -0.147 4.147 22 C -0.062 4.062 23 C -0.173 4.173 24 C 0.053 3.947 25 C -0.146 4.146 26 C 0.283 3.717 27 N -0.455 5.455 28 H 0.310 0.690 29 H 0.401 0.599 30 H 0.125 0.875 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -17.032 3.102 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.237 5.237 2 C 0.025 3.975 3 C -0.343 4.343 4 C 0.009 3.991 5 N -0.242 5.242 6 C 0.276 3.724 7 C -0.373 4.373 8 H 0.121 0.879 9 C -0.178 4.178 10 N -0.356 5.356 11 Si 0.799 3.201 12 H -0.184 1.184 13 H -0.181 1.181 14 H -0.175 1.175 15 N -0.257 5.257 16 C 0.235 3.765 17 N -0.263 5.263 18 C 0.057 3.943 19 C -0.165 4.165 20 C -0.085 4.085 21 C -0.165 4.165 22 C -0.080 4.080 23 C -0.177 4.177 24 C 0.025 3.975 25 C -0.156 4.156 26 C -0.031 4.031 27 N -0.132 5.132 28 H 0.122 0.878 29 H 0.238 0.762 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.178 -14.566 2.822 17.992 hybrid contribution 0.271 -0.192 -0.837 0.901 sum 10.450 -14.758 1.984 18.191 Atomic orbital electron populations 1.81028 1.12575 1.12039 1.18084 1.24756 0.91382 0.91127 0.90194 1.13012 0.82838 1.00212 1.38268 1.25357 0.92120 0.91381 0.90255 1.81027 1.10457 1.13770 1.18947 1.16680 0.80453 0.90320 0.84930 1.20282 1.03738 1.04059 1.09225 0.87869 1.27064 0.95162 0.99717 0.95878 1.69470 1.14933 1.34732 1.16484 0.85143 0.79016 0.76371 0.79566 1.18361 1.18073 1.17540 1.41466 1.04298 1.26836 1.53145 1.17956 0.85387 0.86494 0.86671 1.67688 1.38305 1.06129 1.14213 1.19161 0.90209 0.92001 0.92935 1.20881 1.00871 0.95503 0.99236 1.21293 0.94785 0.96287 0.96113 1.21198 0.94212 1.00626 1.00504 1.21305 1.01031 0.91737 0.93967 1.18783 0.93734 1.00432 1.04791 1.22011 1.01041 0.87319 0.87102 1.16436 0.91903 0.99945 1.07282 1.25326 0.92912 0.92531 0.92350 1.81126 1.09436 1.11067 1.11527 0.87800 0.76160 0.85685 0.82914 0.82399 0.81967 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.95 18.54 19.00 0.35 -26.60 16 2 C 0.33 15.73 14.05 88.33 1.24 16.97 16 3 C -0.32 -14.85 5.88 -20.08 -0.12 -14.97 16 4 C 0.31 14.96 14.82 88.33 1.31 16.27 16 5 N -0.56 -27.50 18.53 19.00 0.35 -27.15 16 6 C 0.38 16.38 5.45 38.98 0.21 16.59 16 7 C -0.35 -14.36 7.46 23.08 0.17 -14.19 16 8 H 0.10 4.40 7.29 -2.91 -0.02 4.38 16 9 C 0.05 1.91 5.30 85.56 0.45 2.36 16 10 N -0.74 -27.33 10.90 21.98 0.24 -27.09 16 11 Si 0.98 29.77 29.57 68.60 2.03 31.80 16 12 H -0.26 -7.92 7.11 99.48 0.71 -7.21 16 13 H -0.26 -7.30 7.11 99.48 0.71 -6.60 16 14 H -0.25 -7.83 7.11 99.48 0.71 -7.12 16 15 N -0.63 -25.41 3.23 -183.90 -0.59 -26.00 16 16 C 0.48 17.70 5.96 134.07 0.80 18.50 16 17 N -0.55 -20.01 8.80 -185.32 -1.63 -21.64 16 18 C 0.18 5.47 6.61 40.28 0.27 5.73 16 19 C -0.15 -3.68 9.97 22.35 0.22 -3.46 16 20 C -0.06 -1.11 9.94 22.05 0.22 -0.89 16 21 C -0.15 -2.01 9.96 22.05 0.22 -1.79 16 22 C -0.06 -0.94 9.76 22.34 0.22 -0.73 16 23 C -0.17 -4.04 5.74 -21.27 -0.12 -4.16 16 24 C 0.05 1.19 9.63 23.00 0.22 1.41 16 25 C -0.15 -4.46 5.76 -21.08 -0.12 -4.58 16 26 C 0.28 9.21 14.05 88.36 1.24 10.45 16 27 N -0.45 -16.18 18.52 18.98 0.35 -15.83 16 28 H 0.31 10.35 8.29 -92.71 -0.77 9.58 16 29 H 0.40 16.22 7.62 -92.71 -0.71 15.51 16 30 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -58.78 333.26 8.04 -50.74 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.51 Total: 18.25 kcal Atomic # 6 Polarization: 37.09 SS G_CDS: 6.43 Total: 43.52 kcal Atomic # 7 Polarization: -143.38 SS G_CDS: -0.93 Total: -144.31 kcal Atomic # 14 Polarization: 29.77 SS G_CDS: 2.03 Total: 31.80 kcal Total: -58.78 8.04 -50.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.776 kcal (2) G-P(sol) polarization free energy of solvation -58.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds