Wall clock time and date at job start Tue Mar 31 2020 11:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99521 * 192.73469 * 3 2 1 5 5 N 3.51032 * 140.68928 * 192.73537 * 2 1 3 6 6 C 1.41129 * 120.00459 * 12.73784 * 3 2 1 7 7 C 1.38936 * 120.00340 * 185.35907 * 6 3 2 8 8 H 1.08007 * 119.99747 * 25.40863 * 7 6 3 9 9 C 1.40875 * 120.00349 * 205.68921 * 7 6 3 10 10 N 1.30319 * 119.99825 * 7.47126 * 9 7 6 11 11 Si 1.86793 * 119.99996 * 187.47217 * 9 7 6 12 12 H 1.48496 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47204 * 120.00148 * 11 9 7 14 14 H 1.48509 * 109.47188 * 239.99795 * 11 9 7 15 15 N 1.38457 * 119.99854 * 5.35585 * 6 3 2 16 16 C 1.38130 * 119.99953 * 238.85354 * 15 6 3 17 17 N 1.31982 * 119.62725 * 4.33838 * 16 15 6 18 18 C 1.32058 * 123.58128 * 179.97438 * 17 16 15 19 19 C 1.39088 * 121.41627 * 0.02562 * 18 17 16 20 20 C 1.43201 * 121.08166 * 179.97438 * 19 18 17 21 21 N 8.69622 * 104.26820 * 337.39488 * 2 1 3 22 22 C 1.46496 * 117.83010 * 359.97438 * 19 18 17 23 23 C 1.39616 * 122.34834 * 180.02562 * 22 19 18 24 24 C 1.36523 * 119.43162 * 179.97438 * 23 22 19 25 25 C 1.39176 * 120.88463 * 0.02562 * 24 23 22 26 26 C 1.36383 * 121.04810 * 0.02562 * 25 24 23 27 27 C 1.40074 * 119.51171 * 359.70599 * 26 25 24 28 28 H 0.96998 * 119.99687 * 184.99260 * 10 9 7 29 29 H 0.97000 * 119.99558 * 58.85633 * 15 6 3 30 30 H 1.07998 * 119.28725 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.28728 * 359.96856 * 23 22 19 32 32 H 1.07999 * 119.55661 * 179.97438 * 24 23 22 33 33 H 1.07997 * 119.47711 * 179.97438 * 25 24 23 34 34 H 1.07997 * 120.24579 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2834 1.2107 0.2734 5 7 3.8521 2.1692 0.4902 6 6 3.2743 -1.1911 -0.2695 7 6 4.6592 -1.2178 -0.1604 8 1 5.1630 -0.5201 0.4921 9 6 5.4066 -2.1510 -0.9055 10 7 4.8177 -2.8894 -1.8034 11 14 7.2417 -2.3299 -0.6064 12 1 7.6645 -1.3835 0.4569 13 1 7.5404 -3.7205 -0.1794 14 1 7.9793 -2.0277 -1.8594 15 7 2.5872 -2.3338 -0.6425 16 6 2.6966 -3.4837 0.1150 17 7 3.3883 -3.4614 1.2388 18 6 3.5431 -4.5131 2.0223 19 6 2.9741 -5.7423 1.7066 20 6 3.1469 -6.8783 2.5612 21 7 3.2793 -7.7805 3.2395 22 6 2.1922 -5.8370 0.4714 23 6 1.5797 -7.0237 0.0640 24 6 0.8641 -7.0446 -1.0985 25 6 0.7385 -5.9003 -1.8807 26 6 1.3260 -4.7267 -1.5099 27 6 2.0626 -4.6697 -0.3198 28 1 5.3163 -3.5815 -2.2651 29 1 2.0290 -2.3268 -1.4357 30 1 4.1247 -4.4168 2.9272 31 1 1.6712 -7.9175 0.6633 32 1 0.3898 -7.9615 -1.4157 33 1 0.1674 -5.9426 -2.7964 34 1 1.2198 -3.8465 -2.1265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:20 Heat of formation + Delta-G solvation = 144.078506 kcal Electronic energy + Delta-G solvation = -24203.666997 eV Core-core repulsion = 20680.534701 eV Total energy + Delta-G solvation = -3523.132296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71004 -38.08374 -36.97787 -36.17128 -35.30274 -34.82188 -33.97069 -32.18525 -31.20698 -30.18945 -28.87546 -27.23300 -24.36166 -23.58824 -22.58762 -21.46816 -19.50958 -18.45363 -18.24533 -17.55378 -17.01784 -16.38136 -16.15752 -15.40422 -14.66943 -14.49761 -14.36327 -13.94394 -13.65538 -13.35194 -13.11239 -12.91043 -12.84534 -12.67141 -12.41843 -12.31990 -12.18859 -11.88621 -11.75155 -11.71395 -11.69287 -11.59059 -11.16613 -11.07738 -11.00648 -10.78688 -10.29830 -10.13340 -9.22461 -9.10860 -8.97176 -8.23670 -7.79930 -7.02280 -5.51407 0.44893 1.11524 1.73761 2.05103 2.67568 2.76492 2.78182 2.89938 3.23120 3.35553 3.40381 3.47637 3.76828 3.97245 4.14425 4.19221 4.24279 4.38727 4.61562 4.74817 4.90025 4.96191 5.02423 5.08849 5.36127 5.36978 5.49921 5.68290 5.84005 5.96052 6.12012 6.13263 6.22124 6.41976 6.46311 6.49740 6.85798 6.95375 7.12978 7.38638 7.62093 7.75822 7.82201 8.06086 8.56378 8.84590 9.05058 9.09181 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005648 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.046703 B = 4956.319161 C = 5886.901705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C 0.305 3.695 3 C -0.303 4.303 4 C 0.326 3.674 5 N -0.528 5.528 6 C 0.375 3.625 7 C -0.341 4.341 8 H 0.114 0.886 9 C 0.077 3.923 10 N -0.735 5.735 11 Si 0.924 3.076 12 H -0.246 1.246 13 H -0.261 1.261 14 H -0.264 1.264 15 N -0.609 5.609 16 C 0.510 3.490 17 N -0.550 5.550 18 C 0.232 3.768 19 C -0.197 4.197 20 C 0.286 3.714 21 N -0.458 5.458 22 C 0.056 3.944 23 C -0.136 4.136 24 C -0.077 4.077 25 C -0.147 4.147 26 C -0.053 4.053 27 C -0.144 4.144 28 H 0.303 0.697 29 H 0.412 0.588 30 H 0.159 0.841 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 -10.460 -4.025 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C -0.002 4.002 3 C -0.321 4.321 4 C 0.017 3.983 5 N -0.210 5.210 6 C 0.272 3.728 7 C -0.369 4.369 8 H 0.132 0.868 9 C -0.153 4.153 10 N -0.354 5.354 11 Si 0.745 3.255 12 H -0.169 1.169 13 H -0.185 1.185 14 H -0.189 1.189 15 N -0.228 5.228 16 C 0.261 3.739 17 N -0.268 5.268 18 C 0.076 3.924 19 C -0.208 4.208 20 C -0.028 4.028 21 N -0.135 5.135 22 C 0.050 3.950 23 C -0.155 4.155 24 C -0.096 4.096 25 C -0.166 4.166 26 C -0.073 4.073 27 C -0.149 4.149 28 H 0.115 0.885 29 H 0.251 0.749 30 H 0.176 0.824 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.138 -9.576 -2.596 9.923 hybrid contribution 0.338 -1.104 -0.964 1.504 sum 0.476 -10.680 -3.560 11.268 Atomic orbital electron populations 1.81092 1.12318 1.08775 1.19072 1.25253 0.91874 0.92499 0.90555 1.12828 0.82079 0.89584 1.47584 1.24572 0.92055 0.91230 0.90408 1.81044 1.09467 1.11862 1.18641 1.16683 0.89458 0.81533 0.85123 1.20183 0.90829 1.10791 1.15060 0.86802 1.26493 1.04002 0.92904 0.91933 1.69390 1.41191 1.11882 1.12924 0.85896 0.78442 0.80521 0.80604 1.16853 1.18528 1.18868 1.41657 1.46473 1.08006 1.26618 1.18249 0.84798 0.84266 0.86575 1.66939 1.23235 1.30618 1.05997 1.22391 0.89763 0.84932 0.95292 1.17349 1.14415 0.91402 0.97635 1.25255 0.92523 0.92439 0.92534 1.81224 1.11139 1.10505 1.10662 1.18437 0.92885 0.92539 0.91172 1.20707 0.99940 0.96931 0.97910 1.20965 0.96484 0.98267 0.93863 1.20748 1.02100 0.92861 1.00857 1.20855 0.94004 0.98424 0.94036 1.18238 1.05334 0.93111 0.98266 0.88478 0.74899 0.82379 0.85835 0.85852 0.85723 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.62 18.54 41.84 0.78 -10.85 16 2 C 0.31 6.40 14.82 -22.47 -0.33 6.07 16 3 C -0.30 -6.14 5.88 -104.95 -0.62 -6.76 16 4 C 0.33 7.06 14.02 -22.49 -0.32 6.75 16 5 N -0.53 -12.03 18.53 41.81 0.77 -11.26 16 6 C 0.37 7.08 5.43 -83.52 -0.45 6.63 16 7 C -0.34 -6.47 7.52 -38.33 -0.29 -6.75 16 8 H 0.11 2.24 7.23 -52.48 -0.38 1.86 16 9 C 0.08 1.34 5.08 -17.20 -0.09 1.25 16 10 N -0.73 -12.47 11.26 55.60 0.63 -11.84 16 11 Si 0.92 14.18 29.58 -169.99 -5.03 9.16 16 12 H -0.25 -3.90 7.11 56.52 0.40 -3.50 16 13 H -0.26 -4.02 7.11 56.52 0.40 -3.62 16 14 H -0.26 -4.06 7.11 56.52 0.40 -3.65 16 15 N -0.61 -10.22 3.23 -9.51 -0.03 -10.25 16 16 C 0.51 8.36 6.16 -155.38 -0.96 7.40 16 17 N -0.55 -9.25 8.69 -11.89 -0.10 -9.36 16 18 C 0.23 3.36 10.90 -17.14 -0.19 3.17 16 19 C -0.20 -2.83 5.94 -104.33 -0.62 -3.44 16 20 C 0.29 4.20 14.41 -22.46 -0.32 3.88 16 21 N -0.46 -7.38 18.54 41.86 0.78 -6.60 16 22 C 0.06 0.79 5.90 -104.77 -0.62 0.17 16 23 C -0.14 -1.69 9.49 -39.69 -0.38 -2.06 16 24 C -0.08 -0.81 9.96 -39.85 -0.40 -1.21 16 25 C -0.15 -1.57 9.95 -39.90 -0.40 -1.97 16 26 C -0.05 -0.66 9.51 -39.56 -0.38 -1.04 16 27 C -0.14 -2.11 5.75 -106.75 -0.61 -2.72 16 28 H 0.30 4.74 8.29 -40.82 -0.34 4.40 16 29 H 0.41 6.27 6.92 -40.82 -0.28 5.99 16 30 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.12 1.44 7.42 -52.49 -0.39 1.05 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.44 6.48 -52.49 -0.34 1.10 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -24.46 330.93 -5.98 -30.43 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -1.79 Total: 6.22 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -6.96 Total: 9.37 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 2.82 Total: -60.16 kcal Atomic # 14 Polarization: 14.18 SS G_CDS: -5.03 Total: 9.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -24.46 -5.98 -30.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.512 kcal (2) G-P(sol) polarization free energy of solvation -24.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds