Wall clock time and date at job start Tue Mar 31 2020 11:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99521 * 192.73469 * 3 2 1 5 5 N 3.51032 * 140.68928 * 192.73537 * 2 1 3 6 6 C 1.41129 * 120.00459 * 12.73784 * 3 2 1 7 7 C 1.38936 * 120.00340 * 185.35907 * 6 3 2 8 8 H 1.08007 * 119.99747 * 25.40863 * 7 6 3 9 9 C 1.40875 * 120.00349 * 205.68921 * 7 6 3 10 10 N 1.30319 * 119.99825 * 7.47126 * 9 7 6 11 11 Si 1.86793 * 119.99996 * 187.47217 * 9 7 6 12 12 H 1.48496 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47204 * 120.00148 * 11 9 7 14 14 H 1.48509 * 109.47188 * 239.99795 * 11 9 7 15 15 N 1.38457 * 119.99854 * 5.35585 * 6 3 2 16 16 C 1.38130 * 119.99953 * 238.85354 * 15 6 3 17 17 N 1.31982 * 119.62725 * 4.33838 * 16 15 6 18 18 C 1.32058 * 123.58128 * 179.97438 * 17 16 15 19 19 C 1.39088 * 121.41627 * 0.02562 * 18 17 16 20 20 C 1.43201 * 121.08166 * 179.97438 * 19 18 17 21 21 N 8.69622 * 104.26820 * 337.39488 * 2 1 3 22 22 C 1.46496 * 117.83010 * 359.97438 * 19 18 17 23 23 C 1.39616 * 122.34834 * 180.02562 * 22 19 18 24 24 C 1.36523 * 119.43162 * 179.97438 * 23 22 19 25 25 C 1.39176 * 120.88463 * 0.02562 * 24 23 22 26 26 C 1.36383 * 121.04810 * 0.02562 * 25 24 23 27 27 C 1.40074 * 119.51171 * 359.70599 * 26 25 24 28 28 H 0.96998 * 119.99687 * 184.99260 * 10 9 7 29 29 H 0.97000 * 119.99558 * 58.85633 * 15 6 3 30 30 H 1.07998 * 119.28725 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.28728 * 359.96856 * 23 22 19 32 32 H 1.07999 * 119.55661 * 179.97438 * 24 23 22 33 33 H 1.07997 * 119.47711 * 179.97438 * 25 24 23 34 34 H 1.07997 * 120.24579 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2834 1.2107 0.2734 5 7 3.8521 2.1692 0.4902 6 6 3.2743 -1.1911 -0.2695 7 6 4.6592 -1.2178 -0.1604 8 1 5.1630 -0.5201 0.4921 9 6 5.4066 -2.1510 -0.9055 10 7 4.8177 -2.8894 -1.8034 11 14 7.2417 -2.3299 -0.6064 12 1 7.6645 -1.3835 0.4569 13 1 7.5404 -3.7205 -0.1794 14 1 7.9793 -2.0277 -1.8594 15 7 2.5872 -2.3338 -0.6425 16 6 2.6966 -3.4837 0.1150 17 7 3.3883 -3.4614 1.2388 18 6 3.5431 -4.5131 2.0223 19 6 2.9741 -5.7423 1.7066 20 6 3.1469 -6.8783 2.5612 21 7 3.2793 -7.7805 3.2395 22 6 2.1922 -5.8370 0.4714 23 6 1.5797 -7.0237 0.0640 24 6 0.8641 -7.0446 -1.0985 25 6 0.7385 -5.9003 -1.8807 26 6 1.3260 -4.7267 -1.5099 27 6 2.0626 -4.6697 -0.3198 28 1 5.3163 -3.5815 -2.2651 29 1 2.0290 -2.3268 -1.4357 30 1 4.1247 -4.4168 2.9272 31 1 1.6712 -7.9175 0.6633 32 1 0.3898 -7.9615 -1.4157 33 1 0.1674 -5.9426 -2.7964 34 1 1.2198 -3.8465 -2.1265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080784.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:19 Heat of formation + Delta-G solvation = 134.967319 kcal Electronic energy + Delta-G solvation = -24204.062087 eV Core-core repulsion = 20680.534701 eV Total energy + Delta-G solvation = -3523.527387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80989 -39.33465 -38.10526 -37.51233 -36.80912 -36.51192 -35.30452 -33.44094 -32.27820 -31.34815 -30.04807 -28.74476 -25.50138 -24.66137 -23.67891 -22.77059 -20.91682 -19.71203 -19.36868 -18.93968 -18.22126 -17.69573 -17.31929 -16.65693 -15.70098 -15.60017 -15.42466 -15.19143 -14.74857 -14.60478 -14.42583 -14.37763 -14.23707 -14.00927 -13.87015 -13.44996 -13.40786 -13.37291 -13.33125 -13.10647 -13.04541 -12.68493 -12.64547 -12.62392 -12.07645 -12.06094 -11.60176 -11.42096 -10.34407 -10.27894 -9.98561 -9.62591 -9.11571 -8.25503 -7.06414 -0.63978 0.10798 0.58225 0.78793 1.40221 1.52708 1.54204 1.71342 2.04205 2.09056 2.10744 2.16558 2.27146 2.43235 2.58223 2.71753 3.04651 3.26925 3.44222 3.57554 3.75156 3.79566 3.93688 3.96778 4.12269 4.42698 4.47309 4.60523 4.72923 4.73984 4.82380 5.00875 5.18816 5.33353 5.46084 5.50752 5.55100 5.76372 5.95489 6.01451 6.19752 6.46144 6.59605 6.66430 7.20180 7.34730 7.41252 7.72621 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005648 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.046703 B = 4956.319161 C = 5886.901705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.315 3.685 3 C -0.318 4.318 4 C 0.330 3.670 5 N -0.557 5.557 6 C 0.375 3.625 7 C -0.341 4.341 8 H 0.102 0.898 9 C 0.057 3.943 10 N -0.727 5.727 11 Si 0.969 3.031 12 H -0.257 1.257 13 H -0.258 1.258 14 H -0.259 1.259 15 N -0.611 5.611 16 C 0.499 3.501 17 N -0.575 5.575 18 C 0.223 3.777 19 C -0.193 4.193 20 C 0.303 3.697 21 N -0.481 5.481 22 C 0.040 3.960 23 C -0.147 4.147 24 C -0.065 4.065 25 C -0.136 4.136 26 C -0.067 4.067 27 C -0.155 4.155 28 H 0.313 0.687 29 H 0.417 0.583 30 H 0.179 0.821 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -12.661 -5.352 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.237 5.237 2 C 0.009 3.991 3 C -0.337 4.337 4 C 0.024 3.976 5 N -0.240 5.240 6 C 0.272 3.728 7 C -0.368 4.368 8 H 0.120 0.880 9 C -0.173 4.173 10 N -0.346 5.346 11 Si 0.789 3.211 12 H -0.180 1.180 13 H -0.182 1.182 14 H -0.183 1.183 15 N -0.232 5.232 16 C 0.251 3.749 17 N -0.294 5.294 18 C 0.069 3.931 19 C -0.204 4.204 20 C -0.010 4.010 21 N -0.159 5.159 22 C 0.034 3.966 23 C -0.166 4.166 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.087 4.087 27 C -0.161 4.161 28 H 0.126 0.874 29 H 0.257 0.743 30 H 0.196 0.804 31 H 0.146 0.854 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.075 -11.814 -3.922 12.448 hybrid contribution 0.355 -0.609 -0.629 0.945 sum 0.430 -12.423 -4.551 13.237 Atomic orbital electron populations 1.81078 1.12760 1.09434 1.20382 1.25300 0.91871 0.91919 0.90039 1.12896 0.81774 0.89793 1.49265 1.24814 0.91674 0.91231 0.89906 1.81024 1.10239 1.12557 1.20221 1.16596 0.89492 0.81817 0.84944 1.20271 0.91124 1.10713 1.14706 0.87979 1.26850 1.05998 0.92650 0.91839 1.69356 1.42037 1.11194 1.11988 0.85236 0.75475 0.80145 0.80212 1.18003 1.18211 1.18339 1.41508 1.46895 1.07623 1.27163 1.18425 0.85277 0.84576 0.86610 1.66900 1.24120 1.31728 1.06677 1.22677 0.90110 0.84606 0.95744 1.17404 1.14218 0.91073 0.97717 1.25204 0.91773 0.92042 0.91960 1.81240 1.12015 1.11267 1.11403 1.18632 0.93493 0.93294 0.91176 1.20866 1.00404 0.96376 0.98926 1.21385 0.94858 0.99542 0.92566 1.21156 1.00773 0.91925 1.01559 1.21069 0.94242 0.99757 0.93586 1.18321 1.05986 0.92456 0.99314 0.87416 0.74306 0.80449 0.85365 0.82434 0.82575 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.38 18.54 19.00 0.35 -24.03 16 2 C 0.31 13.33 14.82 88.33 1.31 14.64 16 3 C -0.32 -13.11 5.88 -20.08 -0.12 -13.23 16 4 C 0.33 14.60 14.02 88.34 1.24 15.84 16 5 N -0.56 -25.84 18.53 19.00 0.35 -25.49 16 6 C 0.37 14.22 5.43 38.97 0.21 14.43 16 7 C -0.34 -12.90 7.52 23.08 0.17 -12.72 16 8 H 0.10 4.07 7.23 -2.91 -0.02 4.05 16 9 C 0.06 1.94 5.08 85.56 0.43 2.38 16 10 N -0.73 -23.58 11.26 21.99 0.25 -23.33 16 11 Si 0.97 27.93 29.58 68.60 2.03 29.96 16 12 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 13 H -0.26 -7.30 7.11 99.48 0.71 -6.60 16 14 H -0.26 -7.26 7.11 99.48 0.71 -6.55 16 15 N -0.61 -20.33 3.23 -184.00 -0.59 -20.92 16 16 C 0.50 16.09 6.16 134.03 0.83 16.92 16 17 N -0.58 -19.22 8.69 -191.54 -1.66 -20.88 16 18 C 0.22 6.34 10.90 84.86 0.93 7.26 16 19 C -0.19 -5.36 5.94 -19.68 -0.12 -5.48 16 20 C 0.30 8.59 14.41 88.33 1.27 9.87 16 21 N -0.48 -15.03 18.54 19.01 0.35 -14.68 16 22 C 0.04 1.08 5.90 -19.96 -0.12 0.96 16 23 C -0.15 -3.27 9.49 22.20 0.21 -3.06 16 24 C -0.06 -1.12 9.96 22.09 0.22 -0.90 16 25 C -0.14 -2.40 9.95 22.06 0.22 -2.18 16 26 C -0.07 -1.52 9.51 22.28 0.21 -1.30 16 27 C -0.16 -4.35 5.75 -21.24 -0.12 -4.48 16 28 H 0.31 9.14 8.29 -92.71 -0.77 8.37 16 29 H 0.42 12.52 6.92 -92.71 -0.64 11.88 16 30 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.13 2.70 7.42 -2.91 -0.02 2.68 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.14 2.81 6.48 -2.91 -0.02 2.79 16 Total: -1.00 -51.90 330.93 8.43 -43.46 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.58 Total: 16.97 kcal Atomic # 6 Polarization: 32.17 SS G_CDS: 6.78 Total: 38.95 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -0.95 Total: -129.33 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: 2.03 Total: 29.96 kcal Total: -51.90 8.43 -43.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080784.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.430 kcal (2) G-P(sol) polarization free energy of solvation -51.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds