Wall clock time and date at job start Tue Mar 31 2020 11:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 117.00195 * 2 1 4 4 C 1.38988 * 120.43431 * 359.72700 * 3 2 1 5 5 C 1.39188 * 118.31545 * 180.25234 * 4 3 2 6 6 N 1.39758 * 120.46711 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.00356 * 173.03159 * 6 5 4 8 8 C 1.39484 * 119.99355 * 300.09776 * 7 6 5 9 9 H 1.07994 * 119.99754 * 151.77506 * 8 7 6 10 10 C 1.41827 * 120.00216 * 331.76506 * 8 7 6 11 11 N 1.29796 * 119.99897 * 168.76229 * 10 8 7 12 12 Si 1.86800 * 120.00210 * 348.76537 * 10 8 7 13 13 H 1.48501 * 109.46880 * 87.53768 * 12 10 8 14 14 H 1.48500 * 109.47257 * 207.53688 * 12 10 8 15 15 H 1.48504 * 109.46989 * 327.54102 * 12 10 8 16 16 C 1.40717 * 120.00278 * 120.09725 * 7 6 5 17 17 C 1.43200 * 120.00062 * 185.13326 * 16 7 6 18 18 N 9.32904 * 101.41387 * 355.47232 * 2 1 3 19 19 C 1.43202 * 120.00147 * 5.13756 * 16 7 6 20 20 N 7.30517 * 81.27293 * 336.26241 * 2 1 3 21 21 C 1.38983 * 119.07383 * 0.05907 * 5 4 3 22 22 N 1.31773 * 120.77400 * 359.94040 * 21 5 4 23 23 C 1.31852 * 121.85214 * 0.02562 * 22 21 5 24 24 N 1.48021 * 119.57229 * 179.97438 * 23 22 21 25 25 O 1.31694 * 119.99905 * 180.02562 * 24 23 22 26 26 O 1.31701 * 119.99827 * 0.02562 * 24 23 22 27 27 H 1.08997 * 109.46614 * 299.99605 * 1 2 3 28 28 H 1.08994 * 109.47096 * 59.99640 * 1 2 3 29 29 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.84745 * 0.26952 * 4 3 2 31 31 H 0.97002 * 119.99959 * 353.02059 * 6 5 4 32 32 H 0.97006 * 119.99963 * 180.02562 * 11 10 8 33 33 H 1.07994 * 119.61234 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3823 -0.0057 5 6 1.9754 3.5982 -0.0109 6 7 1.2679 4.8035 -0.0162 7 6 1.9429 6.0019 0.1240 8 6 2.6986 6.2466 1.2705 9 1 3.5528 6.9058 1.2237 10 6 2.3453 5.6299 2.4978 11 7 3.1609 5.6774 3.5065 12 14 0.7062 4.7491 2.6628 13 1 0.8558 3.3387 2.2229 14 1 0.2674 4.7814 4.0811 15 1 -0.3075 5.4271 1.8153 16 6 1.8673 6.9748 -0.8899 17 6 2.6525 8.1687 -0.7965 18 7 3.2752 9.1160 -0.7219 19 6 1.0053 6.7710 -2.0150 20 7 0.3206 6.6097 -2.9066 21 6 3.3652 3.5970 -0.0114 22 7 4.0385 2.4643 -0.0059 23 6 3.4312 1.2939 -0.0002 24 7 4.2376 0.0526 0.0052 25 8 3.6398 -1.1208 0.0104 26 8 5.5528 0.1217 0.0049 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2184 2.3499 -0.0059 31 1 0.3033 4.7992 -0.1184 32 1 2.9193 5.2552 4.3458 33 1 3.8996 4.5355 -0.0158 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084193.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:02 Heat of formation + Delta-G solvation = 82.586637 kcal Electronic energy + Delta-G solvation = -25377.777695 eV Core-core repulsion = 21408.836898 eV Total energy + Delta-G solvation = -3968.940798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.59859 -40.38562 -39.71761 -38.88109 -37.22132 -36.64432 -35.87698 -35.37377 -33.85829 -32.45928 -31.10941 -29.15152 -28.60596 -27.62134 -24.82907 -24.13200 -22.88268 -21.13306 -20.14311 -19.94742 -19.37448 -18.88258 -18.44422 -18.04073 -17.59926 -17.35051 -16.94115 -16.57779 -16.25036 -15.38848 -15.00773 -14.94177 -14.72803 -14.60575 -14.37088 -14.26812 -13.78457 -13.54957 -13.47792 -13.28919 -12.98929 -12.85462 -12.72260 -12.61357 -12.48410 -12.40192 -12.21033 -11.90551 -11.78093 -11.45336 -11.31831 -10.47705 -10.12738 -9.44849 -9.15013 -7.25696 -1.77311 -0.25518 -0.13507 -0.03392 0.29925 1.14897 1.33623 1.44286 1.62554 1.76927 1.88880 1.98179 2.14149 2.19318 2.46014 2.48174 2.89277 3.18556 3.25559 3.30909 3.47661 3.62514 3.79384 4.28401 4.33293 4.37179 4.44025 4.58427 4.62725 4.74997 4.83657 5.10661 5.39131 5.53359 5.66866 5.74462 5.87898 6.04681 6.29606 6.37305 7.06798 7.26466 7.54704 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.005042 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.241464 B = 5552.483840 C = 5695.957887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.288 6.288 3 C 0.221 3.779 4 C -0.233 4.233 5 C 0.266 3.734 6 N -0.644 5.644 7 C 0.333 3.667 8 C -0.351 4.351 9 H 0.102 0.898 10 C 0.042 3.958 11 N -0.739 5.739 12 Si 0.939 3.061 13 H -0.224 1.224 14 H -0.280 1.280 15 H -0.221 1.221 16 C -0.287 4.287 17 C 0.324 3.676 18 N -0.548 5.548 19 C 0.314 3.686 20 N -0.536 5.536 21 C 0.063 3.937 22 N -0.389 5.389 23 C 0.074 3.926 24 N 0.008 4.992 25 O -0.159 6.159 26 O -0.239 6.239 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.211 0.789 31 H 0.428 0.572 32 H 0.319 0.681 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 -10.378 3.013 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.196 6.196 3 C 0.165 3.835 4 C -0.263 4.263 5 C 0.155 3.845 6 N -0.270 5.270 7 C 0.230 3.770 8 C -0.378 4.378 9 H 0.120 0.880 10 C -0.189 4.189 11 N -0.356 5.356 12 Si 0.757 3.243 13 H -0.147 1.147 14 H -0.207 1.207 15 H -0.144 1.144 16 C -0.305 4.305 17 C 0.017 3.983 18 N -0.231 5.231 19 C 0.007 3.993 20 N -0.218 5.218 21 C -0.111 4.111 22 N -0.101 5.101 23 C -0.144 4.144 24 N 0.475 4.525 25 O -0.354 6.354 26 O -0.415 6.415 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.228 0.772 31 H 0.271 0.729 32 H 0.132 0.868 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.235 -8.877 2.029 14.462 hybrid contribution -0.773 -0.387 0.680 1.100 sum -12.008 -9.265 2.710 15.407 Atomic orbital electron populations 1.23871 0.74011 1.07521 1.04104 1.86482 1.25538 1.22997 1.84566 1.19027 0.88465 0.87663 0.88380 1.21423 1.03405 0.87113 1.14381 1.18853 0.92197 0.86423 0.87030 1.42287 1.10728 1.01719 1.72274 1.16528 0.87355 0.82398 0.90690 1.20444 1.09021 1.17512 0.90794 0.87982 1.27562 1.02984 0.94161 0.94202 1.69134 1.36540 1.25683 1.04280 0.85857 0.76923 0.81358 0.80122 1.14718 1.20655 1.14355 1.12536 1.19623 0.97366 1.00928 1.24888 0.90988 0.91184 0.91288 1.81116 1.16377 1.14105 1.11478 1.25060 0.91153 0.91970 0.91126 1.81133 1.17147 1.10760 1.12753 1.22789 0.90325 0.94866 1.03097 1.66260 1.40632 0.96556 1.06684 1.19763 0.84681 0.84685 1.25244 1.50207 1.02960 1.03498 0.95856 1.96216 1.73489 1.10929 1.54725 1.96272 0.89799 1.96022 1.59360 0.89704 0.89545 0.84955 0.77222 0.72897 0.86805 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.83 113.37 1.11 1.10 16 2 O -0.29 -6.20 8.40 -71.20 -0.60 -6.80 16 3 C 0.22 5.50 6.69 22.58 0.15 5.65 16 4 C -0.23 -4.40 7.60 22.68 0.17 -4.23 16 5 C 0.27 6.37 4.47 38.28 0.17 6.54 16 6 N -0.64 -14.99 2.24 -179.54 -0.40 -15.39 16 7 C 0.33 9.95 4.46 39.04 0.17 10.12 16 8 C -0.35 -11.91 7.30 23.46 0.17 -11.74 16 9 H 0.10 4.07 7.36 -2.91 -0.02 4.05 16 10 C 0.04 1.36 5.39 85.88 0.46 1.82 16 11 N -0.74 -26.43 13.88 22.15 0.31 -26.13 16 12 Si 0.94 22.09 24.36 68.60 1.67 23.76 16 13 H -0.22 -4.39 5.20 99.48 0.52 -3.87 16 14 H -0.28 -7.05 7.11 99.48 0.71 -6.34 16 15 H -0.22 -4.41 6.63 99.48 0.66 -3.75 16 16 C -0.29 -9.77 5.87 -20.18 -0.12 -9.89 16 17 C 0.32 12.87 13.98 88.33 1.23 14.11 16 18 N -0.55 -23.93 18.54 19.00 0.35 -23.58 16 19 C 0.31 10.93 14.79 88.34 1.31 12.23 16 20 N -0.54 -19.81 18.54 19.00 0.35 -19.46 16 21 C 0.06 1.88 10.03 84.88 0.85 2.74 16 22 N -0.39 -13.54 10.05 -185.51 -1.87 -15.41 16 23 C 0.07 2.50 7.83 129.77 1.02 3.52 16 24 N 0.01 0.31 4.98 -49.59 -0.25 0.06 16 25 O -0.16 -5.82 17.85 10.87 0.19 -5.63 16 26 O -0.24 -10.22 19.76 3.51 0.07 -10.15 16 27 H 0.08 0.46 7.70 -2.39 -0.02 0.44 16 28 H 0.09 0.47 7.69 -2.39 -0.02 0.45 16 29 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.21 1.86 6.45 -2.91 -0.02 1.85 16 31 H 0.43 7.52 7.80 -92.71 -0.72 6.80 16 32 H 0.32 10.09 8.27 -92.70 -0.77 9.32 16 33 H 0.19 5.87 6.23 -2.91 -0.02 5.85 16 Total: -1.00 -58.07 315.40 6.82 -51.25 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.28 Total: 15.49 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 6.71 Total: 31.97 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -1.50 Total: -99.90 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.33 Total: -22.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: 1.67 Total: 23.76 kcal Total: -58.07 6.82 -51.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084193.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.839 kcal (2) G-P(sol) polarization free energy of solvation -58.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds