Wall clock time and date at job start Tue Mar 31 2020 11:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46844 * 270.00099 * 3 2 1 5 5 H 1.48498 * 109.47101 * 29.99727 * 3 2 1 6 6 H 1.48497 * 109.47123 * 149.99667 * 3 2 1 7 7 C 1.39923 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99830 * 195.35994 * 7 2 1 9 9 C 1.41055 * 120.00183 * 15.36174 * 7 2 1 10 10 C 1.40735 * 120.30430 * 25.48005 * 9 7 2 11 11 C 1.36444 * 119.95144 * 180.02562 * 10 9 7 12 12 C 1.38908 * 120.59567 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.68765 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47057 * 359.97438 * 13 12 11 15 15 F 1.39896 * 109.47489 * 119.99528 * 13 12 11 16 16 F 1.39904 * 109.47206 * 239.99904 * 13 12 11 17 17 C 1.38171 * 120.62502 * 359.69808 * 12 11 10 18 18 C 1.38750 * 120.02390 * 0.55885 * 17 12 11 19 19 N 1.38727 * 120.29349 * 179.74700 * 18 17 12 20 20 C 1.46505 * 119.99881 * 359.72171 * 19 18 17 21 21 H 1.09002 * 110.87704 * 322.59457 * 20 19 18 22 22 C 1.54487 * 110.99658 * 86.45516 * 20 19 18 23 23 O 1.45410 * 105.60238 * 92.77132 * 22 20 19 24 24 C 1.33825 * 111.67157 * 17.05917 * 23 22 20 25 25 O 1.20833 * 124.94904 * 179.43931 * 24 23 22 26 26 C 1.51320 * 110.10006 * 359.70393 * 24 23 22 27 27 H 0.96998 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.02283 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.70484 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.98735 * 180.28362 * 17 12 11 31 31 H 0.97002 * 120.00308 * 179.72442 * 19 18 17 32 32 H 1.08995 * 110.21766 * 333.73741 * 22 20 19 33 33 H 1.08994 * 110.21778 * 211.80480 * 22 20 19 34 34 H 1.09008 * 110.53597 * 102.31402 * 26 24 23 35 35 H 1.09004 * 110.54021 * 225.08802 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0085 -1.2118 0.0005 8 1 3.0595 -1.2283 0.2483 9 6 1.3410 -2.4117 -0.3225 10 6 0.1920 -2.3886 -1.1348 11 6 -0.4483 -3.5536 -1.4424 12 6 0.0230 -4.7680 -0.9601 13 6 -0.7004 -6.0423 -1.3121 14 9 -1.8008 -5.7449 -2.1233 15 9 0.1682 -6.8973 -1.9989 16 9 -1.1407 -6.6675 -0.1406 17 6 1.1522 -4.8194 -0.1655 18 6 1.8203 -3.6499 0.1678 19 7 2.9515 -3.6944 0.9696 20 6 3.4421 -4.9796 1.4735 21 1 2.6125 -5.6381 1.7311 22 6 4.3852 -5.6516 0.4509 23 8 5.7266 -5.2273 0.8183 24 6 5.7667 -4.7391 2.0637 25 8 6.7606 -4.3281 2.6144 26 6 4.3872 -4.7828 2.6841 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1832 -1.4494 -1.5137 29 1 -1.3300 -3.5313 -2.0657 30 1 1.5122 -5.7696 0.2001 31 1 3.4177 -2.8746 1.1967 32 1 4.1471 -5.3159 -0.5584 33 1 4.3016 -6.7363 0.5174 34 1 4.3056 -5.6210 3.3762 35 1 4.1662 -3.8437 3.1916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169128262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:21 Heat of formation + Delta-G solvation = -214.281044 kcal Electronic energy + Delta-G solvation = -26380.917789 eV Core-core repulsion = 21928.494695 eV Total energy + Delta-G solvation = -4452.423094 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.40627 -46.94612 -46.88293 -40.94332 -38.42906 -37.36868 -35.09727 -34.08623 -31.63355 -30.25546 -28.02566 -27.57602 -26.80763 -23.85283 -22.52232 -21.22554 -20.79670 -20.31271 -17.89961 -17.75236 -17.69285 -17.49381 -16.98195 -16.85768 -16.14685 -15.57481 -15.03536 -14.72583 -14.28390 -13.94595 -13.83150 -13.77736 -13.61560 -13.38056 -13.16447 -13.10226 -13.01172 -12.88992 -12.62362 -12.31164 -12.07459 -11.81533 -11.76515 -11.47255 -11.31859 -11.11398 -10.68475 -10.65388 -10.17647 -9.94437 -9.89902 -9.50038 -9.36665 -7.82675 -7.10191 -6.72427 -4.57212 2.18427 2.28843 2.83537 2.92372 2.95644 2.95964 3.22488 3.54264 3.71712 3.89000 3.94865 4.25416 4.32195 4.67763 4.81955 4.93208 5.10505 5.14362 5.22845 5.46609 5.50517 5.60119 5.73159 5.93506 6.22937 6.55795 6.71662 6.84194 6.87584 7.05467 7.17763 7.42021 7.49207 7.67860 7.77421 8.03410 8.30544 8.42139 8.56130 8.68320 9.88698 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.007825 B = 0.006872 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.325379 B = 4073.493122 C = 7229.726776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.079 0.921 9 C 0.098 3.902 10 C -0.152 4.152 11 C -0.083 4.083 12 C -0.280 4.280 13 C 0.514 3.486 14 F -0.191 7.191 15 F -0.195 7.195 16 F -0.195 7.195 17 C -0.122 4.122 18 C 0.101 3.899 19 N -0.736 5.736 20 C 0.130 3.870 21 H 0.109 0.891 22 C 0.031 3.969 23 O -0.342 6.342 24 C 0.484 3.516 25 O -0.469 6.469 26 C -0.196 4.196 27 H 0.286 0.714 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.401 0.599 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -6.705 1.409 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.476 4.476 8 H 0.097 0.903 9 C 0.093 3.907 10 C -0.173 4.173 11 C -0.102 4.102 12 C -0.283 4.283 13 C 0.461 3.539 14 F -0.173 7.173 15 F -0.177 7.177 16 F -0.177 7.177 17 C -0.146 4.146 18 C 0.003 3.997 19 N -0.372 5.372 20 C 0.021 3.979 21 H 0.127 0.873 22 C -0.046 4.046 23 O -0.258 6.258 24 C 0.325 3.675 25 O -0.355 6.355 26 C -0.235 4.235 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.237 0.763 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.839 -6.555 1.547 6.982 hybrid contribution 0.096 0.741 0.094 0.753 sum 1.935 -5.814 1.641 6.343 Atomic orbital electron populations 1.69806 1.07560 1.29835 1.33082 1.25914 0.94835 1.01523 0.92208 0.86239 0.80409 0.80204 0.79620 1.19033 1.20077 1.18487 1.19382 0.97016 0.90917 1.40300 0.90286 1.17409 0.92663 0.90293 0.90359 1.20800 0.98627 0.96833 1.00999 1.20124 0.98944 0.91650 0.99510 1.18762 1.03397 0.90386 1.15734 1.18600 0.76564 0.85296 0.73489 1.93070 1.56458 1.93366 1.74389 1.93119 1.70058 1.73875 1.80642 1.93125 1.90329 1.84945 1.49290 1.19557 0.97000 0.95606 1.02455 1.17566 0.90830 0.93651 0.97692 1.43861 1.30377 1.05481 1.57436 1.21923 0.95950 0.89150 0.90847 0.87305 1.24915 0.77513 0.99979 1.02162 1.86731 1.34175 1.72732 1.32133 1.23050 0.90564 0.73447 0.80480 1.90711 1.38468 1.43132 1.63142 1.23271 0.93135 1.07286 0.99815 0.90331 0.85408 0.88178 0.88468 0.76275 0.86847 0.89019 0.85850 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.89 10.87 55.55 0.60 -17.28 16 2 C 0.08 1.66 5.18 -17.32 -0.09 1.57 16 3 Si 0.91 16.87 29.59 -169.99 -5.03 11.84 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.45 -10.09 8.51 -37.88 -0.32 -10.41 16 8 H 0.08 1.69 6.68 -52.49 -0.35 1.34 16 9 C 0.10 2.21 5.59 -106.63 -0.60 1.62 16 10 C -0.15 -3.49 8.63 -39.29 -0.34 -3.83 16 11 C -0.08 -1.76 9.35 -39.98 -0.37 -2.14 16 12 C -0.28 -5.64 5.39 -104.40 -0.56 -6.21 16 13 C 0.51 9.51 3.31 36.00 0.12 9.63 16 14 F -0.19 -3.52 15.94 2.25 0.04 -3.48 16 15 F -0.20 -3.47 17.23 2.25 0.04 -3.43 16 16 F -0.20 -3.54 17.23 2.25 0.04 -3.50 16 17 C -0.12 -2.34 8.74 -39.42 -0.34 -2.68 16 18 C 0.10 2.00 6.68 -83.30 -0.56 1.44 16 19 N -0.74 -12.10 5.24 -50.05 -0.26 -12.37 16 20 C 0.13 1.62 3.04 -66.18 -0.20 1.42 16 21 H 0.11 1.25 6.72 -51.93 -0.35 0.90 16 22 C 0.03 0.37 7.68 37.94 0.29 0.66 16 23 O -0.34 -4.95 10.93 -37.88 -0.41 -5.37 16 24 C 0.48 6.98 8.65 36.31 0.31 7.29 16 25 O -0.47 -8.29 18.00 -18.44 -0.33 -8.62 16 26 C -0.20 -2.16 6.52 -26.61 -0.17 -2.33 16 27 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 28 H 0.13 3.05 6.13 -52.49 -0.32 2.73 16 29 H 0.10 2.00 7.12 -52.49 -0.37 1.62 16 30 H 0.10 1.61 6.32 -52.49 -0.33 1.28 16 31 H 0.40 6.78 6.81 -40.82 -0.28 6.51 16 32 H 0.11 1.50 8.08 -51.93 -0.42 1.08 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.12 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.12 1.32 8.04 -51.93 -0.42 0.91 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -25.81 314.12 -6.24 -32.06 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -2.82 Total: 9.38 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.83 Total: -3.96 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.34 Total: -29.65 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.75 Total: -13.98 kcal Atomic # 9 Polarization: -10.53 SS G_CDS: 0.11 Total: -10.42 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.81 -6.24 -32.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169128262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.226 kcal (2) G-P(sol) polarization free energy of solvation -25.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds