Wall clock time and date at job start Tue Mar 31 2020 11:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46844 * 270.00099 * 3 2 1 5 5 H 1.48498 * 109.47101 * 29.99727 * 3 2 1 6 6 H 1.48497 * 109.47123 * 149.99667 * 3 2 1 7 7 C 1.39923 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99830 * 195.35994 * 7 2 1 9 9 C 1.41055 * 120.00183 * 15.36174 * 7 2 1 10 10 C 1.40735 * 120.30430 * 25.48005 * 9 7 2 11 11 C 1.36444 * 119.95144 * 180.02562 * 10 9 7 12 12 C 1.38908 * 120.59567 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.68765 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47057 * 359.97438 * 13 12 11 15 15 F 1.39896 * 109.47489 * 119.99528 * 13 12 11 16 16 F 1.39904 * 109.47206 * 239.99904 * 13 12 11 17 17 C 1.38171 * 120.62502 * 359.69808 * 12 11 10 18 18 C 1.38750 * 120.02390 * 0.55885 * 17 12 11 19 19 N 1.38727 * 120.29349 * 179.74700 * 18 17 12 20 20 C 1.46505 * 119.99881 * 359.72171 * 19 18 17 21 21 H 1.09002 * 110.87704 * 322.59457 * 20 19 18 22 22 C 1.54487 * 110.99658 * 86.45516 * 20 19 18 23 23 O 1.45410 * 105.60238 * 92.77132 * 22 20 19 24 24 C 1.33825 * 111.67157 * 17.05917 * 23 22 20 25 25 O 1.20833 * 124.94904 * 179.43931 * 24 23 22 26 26 C 1.51320 * 110.10006 * 359.70393 * 24 23 22 27 27 H 0.96998 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.02283 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.70484 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.98735 * 180.28362 * 17 12 11 31 31 H 0.97002 * 120.00308 * 179.72442 * 19 18 17 32 32 H 1.08995 * 110.21766 * 333.73741 * 22 20 19 33 33 H 1.08994 * 110.21778 * 211.80480 * 22 20 19 34 34 H 1.09008 * 110.53597 * 102.31402 * 26 24 23 35 35 H 1.09004 * 110.54021 * 225.08802 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0085 -1.2118 0.0005 8 1 3.0595 -1.2283 0.2483 9 6 1.3410 -2.4117 -0.3225 10 6 0.1920 -2.3886 -1.1348 11 6 -0.4483 -3.5536 -1.4424 12 6 0.0230 -4.7680 -0.9601 13 6 -0.7004 -6.0423 -1.3121 14 9 -1.8008 -5.7449 -2.1233 15 9 0.1682 -6.8973 -1.9989 16 9 -1.1407 -6.6675 -0.1406 17 6 1.1522 -4.8194 -0.1655 18 6 1.8203 -3.6499 0.1678 19 7 2.9515 -3.6944 0.9696 20 6 3.4421 -4.9796 1.4735 21 1 2.6125 -5.6381 1.7311 22 6 4.3852 -5.6516 0.4509 23 8 5.7266 -5.2273 0.8183 24 6 5.7667 -4.7391 2.0637 25 8 6.7606 -4.3281 2.6144 26 6 4.3872 -4.7828 2.6841 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1832 -1.4494 -1.5137 29 1 -1.3300 -3.5313 -2.0657 30 1 1.5122 -5.7696 0.2001 31 1 3.4177 -2.8746 1.1967 32 1 4.1471 -5.3159 -0.5584 33 1 4.3016 -6.7363 0.5174 34 1 4.3056 -5.6210 3.3762 35 1 4.1662 -3.8437 3.1916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169128262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:20 Heat of formation + Delta-G solvation = -226.939180 kcal Electronic energy + Delta-G solvation = -26381.466687 eV Core-core repulsion = 21928.494695 eV Total energy + Delta-G solvation = -4452.971992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.87538 -48.41586 -48.33487 -42.03868 -39.94346 -38.59949 -36.39908 -35.71218 -32.94493 -31.79788 -29.36714 -28.73209 -28.37107 -25.40694 -23.80397 -22.42436 -22.22633 -21.68952 -19.37468 -19.21509 -19.20385 -19.00910 -18.16512 -17.99037 -17.33198 -17.05832 -16.43809 -16.05967 -15.78345 -15.29834 -15.26130 -14.96704 -14.84874 -14.83627 -14.60203 -14.55308 -14.41969 -14.33115 -14.04522 -13.80224 -13.26504 -13.19039 -12.99504 -12.87522 -12.75616 -12.58623 -12.16630 -11.81068 -11.57433 -11.43280 -11.28647 -11.12409 -10.79242 -9.48886 -8.72666 -8.23326 -6.24125 0.66882 1.08089 1.22442 1.40401 1.45970 1.50517 2.04435 2.17518 2.20000 2.61313 2.71181 2.94471 3.28382 3.29691 3.45016 3.54678 3.70411 3.91765 4.17024 4.40209 4.43840 4.58541 4.63086 4.71524 4.79307 4.99719 5.11101 5.25700 5.47056 5.54916 5.78882 5.82083 6.02267 6.14117 6.38990 6.41291 6.71786 6.83792 7.01873 7.12524 8.27957 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.007825 B = 0.006872 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.325379 B = 4073.493122 C = 7229.726776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.082 0.918 9 C 0.066 3.934 10 C -0.172 4.172 11 C -0.096 4.096 12 C -0.278 4.278 13 C 0.522 3.478 14 F -0.191 7.191 15 F -0.187 7.187 16 F -0.189 7.189 17 C -0.127 4.127 18 C 0.111 3.889 19 N -0.737 5.737 20 C 0.126 3.874 21 H 0.132 0.868 22 C 0.033 3.967 23 O -0.360 6.360 24 C 0.481 3.519 25 O -0.511 6.511 26 C -0.178 4.178 27 H 0.289 0.711 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.164 0.836 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -8.464 2.249 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.500 4.500 8 H 0.100 0.900 9 C 0.061 3.939 10 C -0.193 4.193 11 C -0.116 4.116 12 C -0.281 4.281 13 C 0.468 3.532 14 F -0.173 7.173 15 F -0.169 7.169 16 F -0.171 7.171 17 C -0.150 4.150 18 C 0.012 3.988 19 N -0.370 5.370 20 C 0.019 3.981 21 H 0.149 0.851 22 C -0.043 4.043 23 O -0.276 6.276 24 C 0.325 3.675 25 O -0.399 6.399 26 C -0.216 4.216 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.148 0.852 31 H 0.232 0.768 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.182 0.818 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.207 -8.349 2.389 8.960 hybrid contribution -0.021 1.140 -0.204 1.158 sum 2.185 -7.209 2.185 7.843 Atomic orbital electron populations 1.69865 1.08741 1.30625 1.34581 1.26593 0.95374 1.04098 0.91655 0.85313 0.79163 0.76756 0.79271 1.19213 1.19692 1.18283 1.19566 0.97253 0.91620 1.41532 0.90009 1.17715 0.93214 0.91776 0.91202 1.20734 0.99697 0.96710 1.02190 1.20216 0.99357 0.91872 1.00159 1.19035 1.03540 0.90682 1.14864 1.18288 0.76478 0.84748 0.73665 1.93077 1.56412 1.93387 1.74380 1.93136 1.69823 1.73453 1.80475 1.93137 1.90253 1.84706 1.49000 1.19834 0.96486 0.96627 1.02089 1.17636 0.91284 0.92949 0.96976 1.44015 1.29228 1.07140 1.56644 1.22224 0.96905 0.87536 0.91458 0.85051 1.25040 0.76123 1.02073 1.01033 1.86706 1.35738 1.72668 1.32479 1.23566 0.91326 0.72261 0.80347 1.90688 1.40213 1.44943 1.64080 1.23268 0.89882 1.09020 0.99467 0.90015 0.87372 0.87600 0.85237 0.76813 0.88254 0.85113 0.81832 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.56 10.87 21.83 0.24 -38.32 16 2 C 0.04 1.77 5.18 85.24 0.44 2.22 16 3 Si 0.97 35.11 29.59 68.60 2.03 37.14 16 4 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.47 -21.64 8.51 23.37 0.20 -21.44 16 8 H 0.08 3.56 6.68 -2.91 -0.02 3.54 16 9 C 0.07 3.02 5.59 -21.17 -0.12 2.90 16 10 C -0.17 -8.14 8.63 22.46 0.19 -7.95 16 11 C -0.10 -4.12 9.35 22.01 0.21 -3.91 16 12 C -0.28 -10.77 5.39 -19.72 -0.11 -10.88 16 13 C 0.52 18.04 3.31 71.23 0.24 18.28 16 14 F -0.19 -6.69 15.94 44.97 0.72 -5.97 16 15 F -0.19 -6.10 17.23 44.97 0.77 -5.32 16 16 F -0.19 -6.30 17.23 44.97 0.77 -5.52 16 17 C -0.13 -4.53 8.74 22.38 0.20 -4.33 16 18 C 0.11 4.30 6.68 38.99 0.26 4.56 16 19 N -0.74 -22.91 5.24 -312.26 -1.64 -24.54 16 20 C 0.13 2.68 3.04 46.13 0.14 2.82 16 21 H 0.13 2.33 6.72 -2.39 -0.02 2.31 16 22 C 0.03 0.67 7.68 72.49 0.56 1.23 16 23 O -0.36 -9.72 10.93 -47.90 -0.52 -10.24 16 24 C 0.48 13.02 8.65 71.43 0.62 13.64 16 25 O -0.51 -17.70 18.00 21.64 0.39 -17.31 16 26 C -0.18 -3.31 6.52 30.67 0.20 -3.11 16 27 H 0.29 12.56 8.30 -92.71 -0.77 11.79 16 28 H 0.11 5.44 6.13 -2.91 -0.02 5.42 16 29 H 0.11 4.26 7.12 -2.91 -0.02 4.24 16 30 H 0.13 3.72 6.32 -2.91 -0.02 3.70 16 31 H 0.40 13.06 6.81 -92.71 -0.63 12.43 16 32 H 0.10 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.16 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.12 2.33 8.04 -2.39 -0.02 2.31 16 Total: -1.00 -56.96 314.12 6.33 -50.63 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.55 Total: 25.43 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 3.02 Total: -5.97 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.40 Total: -62.86 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.13 Total: -27.55 kcal Atomic # 9 Polarization: -19.08 SS G_CDS: 2.27 Total: -16.81 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -56.96 6.33 -50.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169128262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.312 kcal (2) G-P(sol) polarization free energy of solvation -56.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds