Wall clock time and date at job start Tue Mar 31 2020 11:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48492 * 109.47000 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47174 * 120.00176 * 3 2 1 6 6 H 1.48507 * 109.46881 * 239.99881 * 3 2 1 7 7 C 1.40054 * 120.00066 * 179.72468 * 2 1 3 8 8 H 1.07999 * 119.99940 * 357.42990 * 7 2 1 9 9 C 1.41579 * 120.00325 * 177.43543 * 7 2 1 10 10 N 1.33441 * 119.23223 * 6.73858 * 9 7 2 11 11 C 1.32186 * 120.85524 * 179.97438 * 10 9 7 12 12 Cl 1.73603 * 120.33744 * 179.97438 * 11 10 9 13 13 C 1.38838 * 119.32433 * 0.02562 * 11 10 9 14 14 C 1.40002 * 118.59090 * 0.02562 * 13 11 10 15 15 N 1.38544 * 120.44909 * 180.02562 * 14 13 11 16 16 C 1.46505 * 119.99966 * 359.97438 * 15 14 13 17 17 H 1.09000 * 115.54581 * 9.33504 * 16 15 14 18 18 C 1.52997 * 117.50022 * 223.62785 * 16 15 14 19 19 C 1.52999 * 117.49849 * 155.00310 * 16 15 14 20 20 H 1.08995 * 117.49913 * 0.02562 * 19 16 15 21 21 C 1.50698 * 117.49705 * 215.00415 * 19 16 15 22 22 C 1.38236 * 120.00164 * 299.72731 * 21 19 16 23 23 C 1.38240 * 119.99804 * 179.78844 * 22 21 19 24 24 C 1.38231 * 120.00055 * 0.44458 * 23 22 21 25 25 C 1.38241 * 120.00114 * 359.80711 * 24 23 22 26 26 C 1.38233 * 119.99585 * 359.97438 * 25 24 23 27 27 N 1.32596 * 119.10552 * 359.74427 * 14 13 11 28 28 H 0.96994 * 119.99974 * 175.03843 * 1 2 3 29 29 H 1.07999 * 120.70432 * 180.02562 * 13 11 10 30 30 H 0.96995 * 120.00100 * 180.02562 * 15 14 13 31 31 H 1.08997 * 117.49718 * 359.97438 * 18 16 15 32 32 H 1.09004 * 117.49877 * 145.01995 * 18 16 15 33 33 H 1.07999 * 119.99923 * 0.02562 * 22 21 19 34 34 H 1.08002 * 119.99539 * 180.27343 * 23 22 21 35 35 H 1.07999 * 119.99957 * 179.83346 * 24 23 22 36 36 H 1.07997 * 120.00122 * 180.02562 * 25 24 23 37 37 H 1.08004 * 119.99572 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0948 1.6964 1.2125 6 1 3.0948 1.6963 -1.2126 7 6 2.0072 -1.2129 0.0058 8 1 1.4680 -2.1475 0.0523 9 6 3.4219 -1.2138 -0.0490 10 7 4.0780 -0.0545 0.0308 11 6 5.3985 -0.0182 -0.0165 12 17 6.2382 1.4976 0.0878 13 6 6.1069 -1.2045 -0.1516 14 6 5.3927 -2.4058 -0.2341 15 7 6.0607 -3.6120 -0.3689 16 6 7.5244 -3.6363 -0.4267 17 1 8.0195 -2.6922 -0.1995 18 6 8.1752 -4.5416 -1.4744 19 6 8.2272 -4.9246 0.0060 20 1 7.6006 -5.7542 0.3332 21 6 9.5510 -4.7911 0.7136 22 6 10.6150 -4.1773 0.0794 23 6 11.8280 -4.0510 0.7302 24 6 11.9798 -4.5466 2.0116 25 6 10.9174 -5.1650 2.6439 26 6 9.7030 -5.2873 1.9948 27 7 4.0684 -2.3740 -0.1757 28 1 -0.4850 -0.8368 -0.0726 29 1 7.1862 -1.2008 -0.1922 30 1 5.5593 -4.4404 -0.4258 31 1 7.5143 -5.1194 -2.1205 32 1 9.0987 -4.1931 -1.9369 33 1 10.4974 -3.7931 -0.9231 34 1 12.6580 -3.5675 0.2363 35 1 12.9283 -4.4503 2.5190 36 1 11.0358 -5.5519 3.6452 37 1 8.8729 -5.7701 2.4889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169810231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:10 Heat of formation + Delta-G solvation = 78.003423 kcal Electronic energy + Delta-G solvation = -22226.527930 eV Core-core repulsion = 18801.637897 eV Total energy + Delta-G solvation = -3424.890033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00192 -39.43271 -37.57670 -36.06381 -34.59494 -33.49900 -31.55278 -31.12207 -30.64235 -29.34903 -26.45822 -24.03802 -23.07101 -22.46275 -22.45487 -20.90727 -20.39487 -18.82607 -17.51598 -16.93423 -16.65160 -15.70505 -15.20042 -14.85602 -14.71132 -14.42883 -14.10673 -13.91990 -13.52972 -13.31729 -13.08903 -13.05624 -12.66936 -12.32427 -12.23940 -11.97816 -11.47580 -11.40419 -11.18679 -10.87018 -10.80058 -10.68635 -10.57291 -9.79430 -9.75068 -9.38199 -9.10186 -9.03312 -8.79433 -8.54149 -7.69266 -7.49712 -7.46989 -5.12626 1.13073 1.22350 2.17923 2.43159 2.48983 3.32316 3.49910 3.60819 3.63940 3.98773 3.99147 4.38695 4.45142 4.53520 4.66412 4.69344 4.81622 4.85571 4.93458 5.04297 5.29058 5.41769 5.42101 5.46744 5.65753 5.69297 5.78140 5.86918 5.90736 5.99912 6.13622 6.29936 6.33449 6.39411 6.45931 6.62842 6.81667 7.30335 7.34177 7.75170 7.95382 8.05951 8.29822 8.51794 9.59483 9.83835 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003258 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.219434 B = 8591.268155 C = 9368.124221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.046 3.954 3 Si 1.151 2.849 4 H -0.330 1.330 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.431 4.431 8 H 0.095 0.905 9 C 0.431 3.569 10 N -0.618 5.618 11 C 0.295 3.705 12 Cl -0.066 7.066 13 C -0.397 4.397 14 C 0.471 3.529 15 N -0.693 5.693 16 C 0.122 3.878 17 H 0.135 0.865 18 C -0.190 4.190 19 C -0.134 4.134 20 H 0.114 0.886 21 C -0.044 4.044 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.118 4.118 26 C -0.113 4.113 27 N -0.630 5.630 28 H 0.287 0.713 29 H 0.122 0.878 30 H 0.402 0.598 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.458 -8.327 0.659 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.178 4.178 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.198 3.802 10 N -0.347 5.347 11 C 0.119 3.881 12 Cl -0.038 7.038 13 C -0.430 4.430 14 C 0.223 3.777 15 N -0.326 5.326 16 C 0.013 3.987 17 H 0.152 0.848 18 C -0.229 4.229 19 C -0.154 4.154 20 H 0.132 0.868 21 C -0.044 4.044 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.131 4.131 27 N -0.359 5.359 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.238 0.762 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.255 -6.589 0.790 19.424 hybrid contribution 0.996 -2.160 -0.067 2.379 sum 19.251 -8.749 0.724 21.158 Atomic orbital electron populations 1.70640 1.07993 1.33089 1.29018 1.27893 0.95283 1.06111 0.88481 0.81831 0.70511 0.69191 0.79920 1.26314 1.20929 1.21522 1.20596 0.88233 0.96900 1.40935 0.88747 1.19464 0.93862 0.79909 0.86960 1.66409 1.07140 1.30054 1.31090 1.21162 0.89822 0.85408 0.91688 1.98329 1.75908 1.33373 1.96194 1.20877 0.99754 0.90743 1.31605 1.18149 0.88838 0.84753 0.85962 1.43513 1.03139 1.06114 1.79802 1.21609 0.80730 0.95208 1.01137 0.84773 1.23693 1.03382 1.04483 0.91370 1.21622 0.96037 1.00782 0.96935 0.86756 1.19099 0.93353 0.97852 0.94102 1.21097 0.92841 0.99798 1.00218 1.21126 0.97422 0.99768 0.95174 1.21142 0.98906 0.99142 0.95440 1.21135 0.93189 0.99436 0.99834 1.20998 0.97580 1.00180 0.94327 1.68262 1.05804 1.30349 1.31439 0.90138 0.85969 0.76184 0.88032 0.87735 0.85754 0.86085 0.86261 0.86113 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.99 13.65 55.55 0.76 -20.23 16 2 C 0.05 1.25 5.52 -17.36 -0.10 1.15 16 3 Si 1.15 28.74 25.44 -169.99 -4.32 24.42 16 4 H -0.33 -8.07 7.11 56.52 0.40 -7.66 16 5 H -0.28 -7.08 6.91 56.52 0.39 -6.68 16 6 H -0.29 -7.23 6.97 56.52 0.39 -6.83 16 7 C -0.43 -11.82 9.81 -37.63 -0.37 -12.19 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.43 11.53 7.24 -158.35 -1.15 10.39 16 10 N -0.62 -16.00 4.51 -9.83 -0.04 -16.04 16 11 C 0.29 6.73 7.33 -17.18 -0.13 6.60 16 12 Cl -0.07 -1.28 29.15 -51.86 -1.51 -2.79 16 13 C -0.40 -8.18 9.24 -38.70 -0.36 -8.54 16 14 C 0.47 9.93 7.71 -154.97 -1.19 8.73 16 15 N -0.69 -11.16 5.72 -53.77 -0.31 -11.47 16 16 C 0.12 1.54 5.96 -67.93 -0.40 1.14 16 17 H 0.13 1.77 5.93 -51.93 -0.31 1.46 16 18 C -0.19 -1.90 9.79 -26.73 -0.26 -2.16 16 19 C -0.13 -1.41 5.97 -91.77 -0.55 -1.96 16 20 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.04 -0.46 5.61 -104.62 -0.59 -1.05 16 22 C -0.12 -1.18 9.30 -39.58 -0.37 -1.55 16 23 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.11 -1.15 9.74 -39.58 -0.39 -1.54 16 27 N -0.63 -15.58 10.39 -11.90 -0.12 -15.70 16 28 H 0.29 7.28 8.72 -40.82 -0.36 6.92 16 29 H 0.12 2.15 5.99 -52.49 -0.31 1.83 16 30 H 0.40 6.04 8.95 -40.82 -0.37 5.67 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 0.90 6.17 -51.93 -0.32 0.58 16 33 H 0.12 1.04 6.02 -52.49 -0.32 0.72 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -29.50 331.53 -11.35 -40.84 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.75 Total: 1.40 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -7.04 Total: -5.43 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.28 Total: -63.44 kcal Atomic # 14 Polarization: 28.74 SS G_CDS: -4.32 Total: 24.42 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.51 Total: -2.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.50 -11.35 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169810231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.848 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds