Wall clock time and date at job start Tue Mar 31 2020 11:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86796 * 119.99778 * 2 1 4 4 H 1.48506 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47303 * 300.00348 * 3 2 1 6 6 H 1.48498 * 109.47397 * 60.00254 * 3 2 1 7 7 C 1.39921 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00252 * 175.36258 * 7 2 1 9 9 C 1.41322 * 120.00164 * 355.36259 * 7 2 1 10 10 C 1.40819 * 120.22506 * 34.84373 * 9 7 2 11 11 C 1.37543 * 119.90915 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.38628 * 359.97438 * 11 10 9 13 13 C 1.39054 * 120.46982 * 0.02562 * 12 11 10 14 14 N 1.39962 * 119.96258 * 179.97438 * 13 12 11 15 15 C 1.38431 * 120.00241 * 335.32997 * 14 13 12 16 16 N 1.32896 * 120.72557 * 354.27913 * 15 14 13 17 17 C 1.32504 * 121.14041 * 180.26105 * 16 15 14 18 18 O 1.35499 * 118.84687 * 179.72249 * 17 16 15 19 19 N 1.32158 * 122.30721 * 359.44008 * 17 16 15 20 20 C 1.32922 * 120.60381 * 0.26068 * 19 17 16 21 21 N 1.37187 * 134.84531 * 180.02562 * 20 19 17 22 22 H 0.96999 * 126.28385 * 359.97438 * 21 20 19 23 23 C 1.36415 * 107.43463 * 179.97438 * 21 20 19 24 24 N 1.30107 * 109.96646 * 359.97438 * 23 21 20 25 25 C 1.35545 * 109.44077 * 0.02562 * 24 23 21 26 26 C 1.38639 * 120.07835 * 0.26753 * 13 12 11 27 27 F 1.35099 * 120.19546 * 179.72624 * 26 13 12 28 28 H 0.97000 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.04929 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.80693 * 180.02562 * 11 10 9 31 31 H 1.08010 * 119.76272 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99946 * 155.32490 * 14 13 12 33 33 H 0.96703 * 114.00266 * 269.73158 * 18 17 16 34 34 H 1.08004 * 125.01571 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8838 2.3964 1.2125 7 6 2.0082 -1.2117 -0.0005 8 1 3.0855 -1.2132 -0.0762 9 6 1.3051 -2.4337 0.0979 10 6 0.0404 -2.5744 -0.5051 11 6 -0.6384 -3.7665 -0.4048 12 6 -0.0845 -4.8329 0.2869 13 6 1.1633 -4.7115 0.8884 14 7 1.7121 -5.7946 1.5844 15 6 0.8830 -6.7664 2.1179 16 7 -0.4382 -6.6289 2.0770 17 6 -1.2393 -7.5514 2.5897 18 8 -2.5794 -7.3611 2.5275 19 7 -0.7773 -8.6531 3.1547 20 6 0.5308 -8.8756 3.2341 21 7 1.3117 -9.8835 3.7404 22 1 0.9959 -10.6919 4.1735 23 6 2.6139 -9.5402 3.5228 24 7 2.6749 -8.3902 2.9172 25 6 1.4197 -7.9231 2.7085 26 6 1.8617 -3.5168 0.8046 27 9 3.0718 -3.3945 1.3928 28 1 -0.4850 0.8400 0.0004 29 1 -0.3961 -1.7475 -1.0455 30 1 -1.6081 -3.8727 -0.8682 31 1 -0.6262 -5.7646 0.3590 32 1 2.6735 -5.8645 1.6929 33 1 -2.9465 -6.8956 3.2914 34 1 3.4680 -10.1355 3.8100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170232454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:51 Heat of formation + Delta-G solvation = 55.429337 kcal Electronic energy + Delta-G solvation = -25071.446986 eV Core-core repulsion = 21113.701348 eV Total energy + Delta-G solvation = -3957.745637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.37636 -42.54484 -39.74131 -38.18589 -36.76243 -35.49766 -33.65499 -32.78918 -32.00991 -29.70391 -29.42444 -27.64375 -25.39513 -24.08293 -23.57545 -21.87970 -20.98951 -20.90353 -19.52534 -18.93882 -17.82558 -17.19198 -16.71789 -16.18837 -16.03151 -15.92207 -15.13124 -14.98029 -14.63120 -14.51096 -14.25249 -14.06760 -13.42633 -13.18792 -12.78591 -12.12714 -11.99930 -11.92901 -11.71275 -11.52878 -11.34363 -11.08789 -11.04388 -10.55465 -10.41418 -10.06469 -9.94327 -9.77473 -9.44436 -9.21304 -8.71086 -8.25858 -7.35292 -6.86319 -6.63137 -4.48559 0.72969 1.31194 2.23710 2.57922 2.64280 2.77494 3.07469 3.09657 3.12323 3.17836 3.48658 3.88625 3.94222 3.98989 4.52429 4.60093 4.64916 4.85223 5.38409 5.40319 5.62903 5.74102 6.08328 6.22576 6.58877 6.64776 6.69047 6.88756 6.96556 7.06457 7.19295 7.36386 7.44158 7.57070 7.69539 7.83470 7.95051 7.99350 8.10810 8.34584 8.51654 8.77002 8.80551 10.20670 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.003623 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.242788 B = 7727.510574 C = 8674.678949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.106 4.106 12 C -0.193 4.193 13 C 0.117 3.883 14 N -0.610 5.610 15 C 0.523 3.477 16 N -0.566 5.566 17 C 0.559 3.441 18 O -0.453 6.453 19 N -0.581 5.581 20 C 0.323 3.677 21 N -0.581 5.581 22 H 0.429 0.571 23 C 0.242 3.758 24 N -0.454 5.454 25 C -0.119 4.119 26 C -0.037 4.037 27 F -0.160 7.160 28 H 0.280 0.720 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.424 0.576 33 H 0.412 0.588 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 -14.510 6.688 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.089 3.911 10 C -0.155 4.155 11 C -0.125 4.125 12 C -0.214 4.214 13 C 0.023 3.977 14 N -0.230 5.230 15 C 0.270 3.730 16 N -0.305 5.305 17 C 0.251 3.749 18 O -0.256 6.256 19 N -0.320 5.320 20 C 0.081 3.919 21 N -0.198 5.198 22 H 0.269 0.731 23 C -0.046 4.046 24 N -0.173 5.173 25 C -0.246 4.246 26 C -0.060 4.060 27 F -0.139 7.139 28 H 0.091 0.909 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.271 0.729 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.129 -13.884 5.791 15.044 hybrid contribution 0.738 -0.036 1.282 1.480 sum 0.867 -13.920 7.073 15.638 Atomic orbital electron populations 1.69747 1.07293 1.28950 1.37393 1.25845 0.94960 1.01235 0.92284 0.86087 0.80671 0.80459 0.78478 1.18464 1.19841 1.19868 1.19423 0.95021 0.89730 1.44621 0.90202 1.17475 0.93078 0.90811 0.89739 1.21567 0.95978 0.96672 1.01298 1.20734 0.98692 0.93559 0.99563 1.20686 0.95346 1.00793 1.04595 1.17515 0.96310 0.84998 0.98890 1.42100 1.08570 1.20533 1.51790 1.17405 0.86661 0.84147 0.84753 1.68072 1.01796 1.31988 1.28618 1.19452 0.85392 0.83486 0.86557 1.84697 1.13685 1.79527 1.47665 1.66578 1.12276 1.25707 1.27412 1.18174 0.88690 0.89343 0.95695 1.42743 1.06416 1.19603 1.51026 0.73134 1.25344 0.85398 0.94578 0.99278 1.70197 1.21540 1.09361 1.16229 1.19559 0.91779 0.99096 1.14162 1.17733 0.85352 0.95248 1.07644 1.91263 1.42946 1.96605 1.83091 0.90931 0.84499 0.88100 0.85076 0.73705 0.72890 0.75833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.45 10.60 55.55 0.59 -19.86 16 2 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 3 Si 0.92 18.87 29.56 -169.99 -5.03 13.84 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.16 8.70 -37.78 -0.33 -12.49 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 C 0.09 2.44 5.55 -106.78 -0.59 1.85 16 10 C -0.13 -3.38 8.67 -38.86 -0.34 -3.72 16 11 C -0.11 -2.41 10.01 -39.68 -0.40 -2.80 16 12 C -0.19 -4.30 8.68 -39.12 -0.34 -4.64 16 13 C 0.12 2.64 6.45 -83.69 -0.54 2.10 16 14 N -0.61 -11.98 5.44 -9.67 -0.05 -12.03 16 15 C 0.52 9.68 7.33 -154.62 -1.13 8.55 16 16 N -0.57 -10.53 6.73 -13.74 -0.09 -10.62 16 17 C 0.56 9.18 8.68 -91.23 -0.79 8.39 16 18 O -0.45 -6.24 13.64 -18.19 -0.25 -6.49 16 19 N -0.58 -9.05 10.49 -14.05 -0.15 -9.20 16 20 C 0.32 4.67 8.50 -155.80 -1.33 3.34 16 21 N -0.58 -5.42 6.20 -13.24 -0.08 -5.50 16 22 H 0.43 2.36 8.96 -40.82 -0.37 2.00 16 23 C 0.24 2.16 12.99 -89.43 -1.16 1.00 16 24 N -0.45 -6.31 11.28 -11.82 -0.13 -6.45 16 25 C -0.12 -1.93 7.16 -84.51 -0.61 -2.54 16 26 C -0.04 -0.93 7.31 -38.47 -0.28 -1.21 16 27 F -0.16 -3.91 16.36 2.25 0.04 -3.87 16 28 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 29 H 0.14 3.52 6.14 -52.49 -0.32 3.20 16 30 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.13 2.83 5.56 -52.48 -0.29 2.54 16 32 H 0.42 7.79 8.47 -40.82 -0.35 7.44 16 33 H 0.41 3.49 9.06 45.56 0.41 3.90 16 34 H 0.23 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -32.60 307.53 -9.75 -42.35 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -1.30 Total: 13.64 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -7.93 Total: -0.45 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.08 Total: -63.65 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.25 Total: -6.49 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.60 -9.75 -42.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170232454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.783 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds