Wall clock time and date at job start Tue Mar 31 2020 10:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35971 * 117.00037 * 180.02562 * 17 16 14 19 19 C 1.38648 * 120.05168 * 359.72807 * 18 17 16 20 20 C 1.38179 * 119.98189 * 179.69798 * 19 18 17 21 21 C 1.38361 * 120.08384 * 0.59907 * 20 19 18 22 22 Cl 1.73601 * 119.95295 * 179.69980 * 21 20 19 23 23 C 1.38358 * 120.09905 * 359.67962 * 21 20 19 24 24 C 1.38332 * 120.01491 * 0.02562 * 23 21 20 25 25 F 1.35099 * 120.04180 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.08001 * 120.01159 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.96049 * 180.26965 * 20 19 18 37 37 H 1.07995 * 119.99245 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8044 4.5002 3.6117 19 6 -1.0519 4.6236 4.7697 20 6 -1.5745 5.2830 5.8658 21 6 -2.8528 5.8098 5.8137 22 17 -3.5090 6.6307 7.1955 23 6 -3.6089 5.6836 4.6619 24 6 -3.0875 5.0295 3.5601 25 9 -3.8255 4.9055 2.4353 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0559 4.2084 4.8135 36 1 -0.9864 5.3827 6.7661 37 1 -4.6064 6.0957 4.6230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182495076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:46 Heat of formation + Delta-G solvation = -103.270084 kcal Electronic energy + Delta-G solvation = -23294.103024 eV Core-core repulsion = 19398.290406 eV Total energy + Delta-G solvation = -3895.812618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.98004 -40.47620 -39.07301 -37.82614 -36.51677 -35.08366 -32.52841 -31.31371 -31.15585 -30.25208 -28.34517 -26.65670 -23.57547 -23.02731 -22.69828 -20.52537 -19.48738 -18.82451 -17.67914 -17.47547 -16.78111 -16.61882 -15.80441 -15.57663 -15.47786 -15.33321 -14.88235 -14.45586 -14.25049 -13.81409 -13.49284 -13.42111 -12.95991 -12.73594 -12.41057 -12.32371 -11.79972 -11.69619 -11.49444 -11.36154 -11.30376 -11.05259 -10.94453 -10.85795 -10.38555 -10.25078 -9.68827 -9.41351 -9.17449 -9.10012 -8.56348 -8.44672 -7.96145 -6.18053 -4.28422 0.63952 0.69211 1.69079 2.59077 3.03263 3.15996 3.21543 3.27584 3.28185 3.83137 4.03257 4.26598 4.35654 4.48952 4.59461 4.87098 5.01187 5.04636 5.13442 5.20456 5.30283 5.52830 5.62145 5.69072 6.09333 6.34783 6.40529 6.60465 6.92209 6.98072 7.14513 7.27278 7.33467 7.54558 7.64489 7.82055 8.10838 8.50512 8.68735 8.96842 9.38715 10.87212 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.002518 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.871218 B =11119.145532 C =11765.360861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.502 3.498 15 O -0.521 6.521 16 C 0.034 3.966 17 O -0.273 6.273 18 C 0.111 3.889 19 C -0.175 4.175 20 C -0.076 4.076 21 C -0.052 4.052 22 Cl -0.062 7.062 23 C -0.108 4.108 24 C 0.085 3.915 25 F -0.121 7.121 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.024 0.976 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.389 0.611 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 9.165 18.075 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.398 6.398 16 C -0.044 4.044 17 O -0.184 6.184 18 C 0.063 3.937 19 C -0.194 4.194 20 C -0.095 4.095 21 C -0.079 4.079 22 Cl -0.033 7.033 23 C -0.128 4.128 24 C 0.064 3.936 25 F -0.099 7.099 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.848 9.050 17.045 21.666 hybrid contribution 1.293 0.010 0.398 1.353 sum -8.555 9.060 17.443 21.437 Atomic orbital electron populations 1.21852 0.98263 0.98215 1.01254 1.21954 0.92637 0.99671 1.02435 1.18850 0.94327 0.89191 0.80497 0.93111 1.21157 0.90478 1.39453 1.06463 0.92054 1.24887 0.98690 0.94719 0.95333 1.69879 1.35320 1.37290 1.09293 0.86496 0.84688 0.78333 0.77509 1.20140 1.21092 1.20168 1.46396 1.13841 1.56045 1.18995 1.19686 0.83563 0.80280 0.88038 1.90748 1.50940 1.58389 1.39699 1.22825 0.82633 0.99331 0.99659 1.86305 1.30694 1.68050 1.33375 1.19221 0.92257 0.94175 0.88054 1.21176 1.01619 1.04402 0.92202 1.20897 0.93471 0.96070 0.99069 1.20419 0.95020 1.02781 0.89707 1.98378 1.85969 1.77480 1.41489 1.20813 1.01459 1.00036 0.90481 1.16707 0.88347 1.03839 0.84675 1.91572 1.75649 1.94162 1.48508 0.94426 0.93050 0.95686 0.88131 0.94925 0.92387 0.77825 0.89133 0.89034 0.83226 0.83876 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.70 -13.42 5.02 -54.93 -0.28 -13.70 16 14 C 0.50 9.39 6.48 -10.99 -0.07 9.32 16 15 O -0.52 -12.20 13.64 -14.35 -0.20 -12.39 16 16 C 0.03 0.45 5.22 36.01 0.19 0.64 16 17 O -0.27 -4.23 9.53 -39.56 -0.38 -4.60 16 18 C 0.11 1.37 6.69 -39.18 -0.26 1.11 16 19 C -0.18 -1.58 9.04 -39.45 -0.36 -1.93 16 20 C -0.08 -0.60 9.82 -39.56 -0.39 -0.99 16 21 C -0.05 -0.46 6.32 -39.49 -0.25 -0.71 16 22 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 23 C -0.11 -1.05 9.80 -39.50 -0.39 -1.43 16 24 C 0.08 1.05 7.31 -39.30 -0.29 0.76 16 25 F -0.12 -1.76 17.11 2.25 0.04 -1.72 16 26 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 6.10 8.54 -40.82 -0.35 5.75 16 33 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 34 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 35 H 0.15 0.99 6.30 -52.49 -0.33 0.66 16 36 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -30.77 332.94 -7.99 -38.76 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.11 Total: 4.07 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.19 Total: -4.94 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.35 Total: -37.18 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.57 Total: -17.00 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.77 -7.99 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182495076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.509 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds