Wall clock time and date at job start Tue Mar 31 2020 11:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48503 * 109.46860 * 269.99592 * 3 2 1 5 5 H 1.48498 * 109.47232 * 29.99656 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00089 * 3 2 1 7 7 C 1.38958 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00179 * 199.91461 * 7 2 1 9 9 N 1.37099 * 119.99845 * 19.90865 * 7 2 1 10 10 C 1.46506 * 119.99559 * 38.29449 * 9 7 2 11 11 C 1.50701 * 109.46966 * 89.99777 * 10 9 7 12 12 C 1.38241 * 119.99909 * 89.99809 * 11 10 9 13 13 C 1.38236 * 119.99608 * 179.97438 * 12 11 10 14 14 C 1.38236 * 120.00242 * 359.97438 * 13 12 11 15 15 C 1.38229 * 119.99900 * 0.27335 * 14 13 12 16 16 C 1.38230 * 119.99912 * 269.97439 * 11 10 9 17 17 C 1.34768 * 120.00310 * 218.29083 * 9 7 2 18 18 O 1.21294 * 120.00088 * 185.03855 * 17 9 7 19 19 C 1.50702 * 120.00193 * 5.03290 * 17 9 7 20 20 C 1.50692 * 109.47628 * 185.36397 * 19 17 9 21 21 O 1.20761 * 120.00059 * 0.02562 * 20 19 17 22 22 C 1.50701 * 120.00185 * 180.02562 * 20 19 17 23 23 F 1.39907 * 109.47060 * 180.02562 * 22 20 19 24 24 F 1.39900 * 109.46974 * 299.99760 * 22 20 19 25 25 F 1.39894 * 109.47320 * 60.00105 * 22 20 19 26 26 H 0.96998 * 119.99750 * 354.98982 * 1 2 3 27 27 H 1.09000 * 109.47349 * 329.99566 * 10 9 7 28 28 H 1.09005 * 109.46920 * 209.99220 * 10 9 7 29 29 H 1.07995 * 119.99927 * 359.97438 * 12 11 10 30 30 H 1.08000 * 119.99956 * 180.02562 * 13 12 11 31 31 H 1.07995 * 119.99739 * 180.02562 * 14 13 12 32 32 H 1.08001 * 120.00459 * 179.72976 * 15 14 13 33 33 H 1.08005 * 120.00152 * 0.02562 * 16 11 10 34 34 H 1.09004 * 109.47152 * 305.36769 * 19 17 9 35 35 H 1.09007 * 109.46832 * 65.36307 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0404 -1.2313 0.3191 9 7 1.3848 -2.3554 -0.4033 10 6 0.4466 -2.3245 -1.5281 11 6 1.1936 -2.5779 -2.8122 12 6 1.3495 -3.8702 -3.2777 13 6 2.0342 -4.1025 -4.4559 14 6 2.5625 -3.0425 -5.1689 15 6 2.4110 -1.7508 -4.7007 16 6 1.7224 -1.5180 -3.5249 17 6 1.6343 -3.5161 0.2344 18 8 1.1541 -4.5505 -0.1787 19 6 2.5101 -3.5290 1.4608 20 6 2.7367 -4.9522 1.9014 21 8 2.2389 -5.8622 1.2831 22 6 3.5846 -5.2398 3.1136 23 9 3.6481 -6.6219 3.3211 24 9 4.8751 -4.7397 2.9093 25 9 3.0184 -4.6249 4.2353 26 1 -0.4850 0.8368 0.0734 27 1 -0.0337 -1.3472 -1.5739 28 1 -0.3112 -3.0958 -1.3904 29 1 0.9364 -4.6982 -2.7210 30 1 2.1557 -5.1120 -4.8199 31 1 3.0971 -3.2240 -6.0895 32 1 2.8275 -0.9230 -5.2554 33 1 1.6006 -0.5084 -3.1612 34 1 3.4680 -3.0638 1.2281 35 1 2.0217 -2.9741 2.2619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184464261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:48 Heat of formation + Delta-G solvation = -183.298341 kcal Electronic energy + Delta-G solvation = -26465.714288 eV Core-core repulsion = 22014.634705 eV Total energy + Delta-G solvation = -4451.079583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.16349 -47.68097 -47.66989 -39.86070 -38.83363 -37.68907 -34.91630 -32.01479 -31.47611 -30.29813 -30.21943 -27.33681 -25.79535 -24.49749 -21.92940 -21.51777 -20.59306 -19.31002 -18.60823 -18.50491 -17.87233 -17.09455 -16.24762 -15.74637 -15.38111 -15.01193 -14.69918 -14.54399 -14.41856 -14.34383 -14.23540 -14.07885 -13.94885 -13.79789 -13.79291 -13.51061 -13.39822 -12.82416 -12.57586 -12.39871 -12.06333 -11.55933 -11.42294 -11.35763 -11.06628 -10.84245 -10.51299 -10.41179 -10.23718 -9.95672 -9.27670 -8.62882 -8.34092 -8.10089 -7.67939 -6.55589 -4.27296 1.48386 1.91258 1.98754 2.36746 2.99789 3.12280 3.12810 3.43519 3.68337 3.93245 3.99453 4.25217 4.30048 4.74044 4.78155 4.87186 5.41305 5.46375 5.55839 5.70893 5.77121 5.87965 6.04881 6.11623 6.17725 6.42727 6.59501 6.72307 7.02120 7.03114 7.05693 7.08954 7.28022 7.41803 7.60475 7.74838 8.17245 8.89317 9.27317 9.72797 10.46267 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.005318 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.517087 B = 5264.135945 C = 6854.154305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.051 3.949 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.347 4.347 8 H 0.090 0.910 9 N -0.427 5.427 10 C 0.148 3.852 11 C -0.080 4.080 12 C -0.102 4.102 13 C -0.133 4.133 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.096 4.096 17 C 0.473 3.527 18 O -0.573 6.573 19 C -0.161 4.161 20 C 0.322 3.678 21 O -0.333 6.333 22 C 0.416 3.584 23 F -0.171 7.171 24 F -0.170 7.170 25 F -0.169 7.169 26 H 0.274 0.726 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -2.187 0.150 5.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.157 4.157 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.108 0.892 9 N -0.145 5.145 10 C 0.025 3.975 11 C -0.081 4.081 12 C -0.121 4.121 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.115 4.115 17 C 0.260 3.740 18 O -0.457 6.457 19 C -0.201 4.201 20 C 0.185 3.815 21 O -0.195 6.195 22 C 0.360 3.640 23 F -0.153 7.153 24 F -0.152 7.152 25 F -0.151 7.151 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.663 -3.079 -0.447 5.606 hybrid contribution 0.851 1.027 0.446 1.406 sum 5.515 -2.052 -0.001 5.884 Atomic orbital electron populations 1.69817 1.06278 1.28387 1.44610 1.25386 0.95113 0.99870 0.95326 0.86159 0.79796 0.81351 0.78830 1.20001 1.20798 1.19149 1.19435 0.96149 0.84664 1.47251 0.89204 1.43299 1.39585 1.06453 1.25180 1.20452 0.90849 1.04661 0.81533 1.20592 0.98151 0.92744 0.96598 1.21308 0.98168 0.97182 0.95396 1.21062 0.99620 0.98344 0.96071 1.20971 1.01251 0.93116 0.99857 1.21047 1.00464 0.96499 0.97110 1.21111 0.96942 0.99256 0.94189 1.19702 0.84627 0.84983 0.84692 1.90660 1.55006 1.32072 1.67915 1.21799 1.04628 0.92058 1.01597 1.25189 0.79401 0.94147 0.82806 1.90638 1.34787 1.47104 1.46967 1.21598 0.80544 0.74944 0.86912 1.93220 1.96302 1.30224 1.95510 1.93222 1.39813 1.87247 1.94917 1.93227 1.84570 1.82695 1.54590 0.91566 0.86737 0.91684 0.85627 0.86999 0.87140 0.86952 0.86221 0.85451 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.43 11.42 55.50 0.63 -19.79 16 2 C 0.05 1.14 4.99 -17.46 -0.09 1.05 16 3 Si 0.91 17.73 29.60 -169.99 -5.03 12.69 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.35 -7.82 8.57 -14.93 -0.13 -7.95 16 8 H 0.09 1.91 6.97 -52.49 -0.37 1.55 16 9 N -0.43 -9.75 2.50 -116.09 -0.29 -10.04 16 10 C 0.15 3.31 5.09 -5.19 -0.03 3.29 16 11 C -0.08 -1.63 5.46 -104.62 -0.57 -2.20 16 12 C -0.10 -1.99 9.57 -39.58 -0.38 -2.37 16 13 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 14 C -0.13 -2.09 10.05 -39.59 -0.40 -2.49 16 15 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 16 C -0.10 -1.83 9.70 -39.58 -0.38 -2.21 16 17 C 0.47 10.52 7.60 -10.99 -0.08 10.44 16 18 O -0.57 -14.09 13.04 -18.94 -0.25 -14.34 16 19 C -0.16 -2.81 4.98 -29.04 -0.14 -2.96 16 20 C 0.32 5.47 6.69 -29.04 -0.19 5.28 16 21 O -0.33 -6.82 14.45 -18.48 -0.27 -7.09 16 22 C 0.42 5.99 3.37 36.01 0.12 6.11 16 23 F -0.17 -2.58 16.92 2.25 0.04 -2.54 16 24 F -0.17 -2.32 17.28 2.25 0.04 -2.28 16 25 F -0.17 -2.33 17.28 2.25 0.04 -2.29 16 26 H 0.27 6.22 8.32 -40.82 -0.34 5.88 16 27 H 0.11 2.70 5.46 -51.93 -0.28 2.41 16 28 H 0.06 1.51 7.44 -51.93 -0.39 1.12 16 29 H 0.13 2.58 7.38 -52.49 -0.39 2.19 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 34 H 0.13 1.97 7.29 -51.93 -0.38 1.59 16 35 H 0.14 2.16 8.14 -51.92 -0.42 1.74 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -26.84 323.22 -6.34 -33.18 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.05 Total: 6.87 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.07 Total: 0.77 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.34 Total: -29.84 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.51 Total: -21.43 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.12 Total: -7.11 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.84 -6.34 -33.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184464261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.122 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds