Wall clock time and date at job start Tue Mar 31 2020 11:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48503 * 109.46860 * 269.99592 * 3 2 1 5 5 H 1.48498 * 109.47232 * 29.99656 * 3 2 1 6 6 H 1.48499 * 109.47351 * 150.00089 * 3 2 1 7 7 C 1.38958 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00179 * 199.91461 * 7 2 1 9 9 N 1.37099 * 119.99845 * 19.90865 * 7 2 1 10 10 C 1.46506 * 119.99559 * 38.29449 * 9 7 2 11 11 C 1.50701 * 109.46966 * 89.99777 * 10 9 7 12 12 C 1.38241 * 119.99909 * 89.99809 * 11 10 9 13 13 C 1.38236 * 119.99608 * 179.97438 * 12 11 10 14 14 C 1.38236 * 120.00242 * 359.97438 * 13 12 11 15 15 C 1.38229 * 119.99900 * 0.27335 * 14 13 12 16 16 C 1.38230 * 119.99912 * 269.97439 * 11 10 9 17 17 C 1.34768 * 120.00310 * 218.29083 * 9 7 2 18 18 O 1.21294 * 120.00088 * 185.03855 * 17 9 7 19 19 C 1.50702 * 120.00193 * 5.03290 * 17 9 7 20 20 C 1.50692 * 109.47628 * 185.36397 * 19 17 9 21 21 O 1.20761 * 120.00059 * 0.02562 * 20 19 17 22 22 C 1.50701 * 120.00185 * 180.02562 * 20 19 17 23 23 F 1.39907 * 109.47060 * 180.02562 * 22 20 19 24 24 F 1.39900 * 109.46974 * 299.99760 * 22 20 19 25 25 F 1.39894 * 109.47320 * 60.00105 * 22 20 19 26 26 H 0.96998 * 119.99750 * 354.98982 * 1 2 3 27 27 H 1.09000 * 109.47349 * 329.99566 * 10 9 7 28 28 H 1.09005 * 109.46920 * 209.99220 * 10 9 7 29 29 H 1.07995 * 119.99927 * 359.97438 * 12 11 10 30 30 H 1.08000 * 119.99956 * 180.02562 * 13 12 11 31 31 H 1.07995 * 119.99739 * 180.02562 * 14 13 12 32 32 H 1.08001 * 120.00459 * 179.72976 * 15 14 13 33 33 H 1.08005 * 120.00152 * 0.02562 * 16 11 10 34 34 H 1.09004 * 109.47152 * 305.36769 * 19 17 9 35 35 H 1.09007 * 109.46832 * 65.36307 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0404 -1.2313 0.3191 9 7 1.3848 -2.3554 -0.4033 10 6 0.4466 -2.3245 -1.5281 11 6 1.1936 -2.5779 -2.8122 12 6 1.3495 -3.8702 -3.2777 13 6 2.0342 -4.1025 -4.4559 14 6 2.5625 -3.0425 -5.1689 15 6 2.4110 -1.7508 -4.7007 16 6 1.7224 -1.5180 -3.5249 17 6 1.6343 -3.5161 0.2344 18 8 1.1541 -4.5505 -0.1787 19 6 2.5101 -3.5290 1.4608 20 6 2.7367 -4.9522 1.9014 21 8 2.2389 -5.8622 1.2831 22 6 3.5846 -5.2398 3.1136 23 9 3.6481 -6.6219 3.3211 24 9 4.8751 -4.7397 2.9093 25 9 3.0184 -4.6249 4.2353 26 1 -0.4850 0.8368 0.0734 27 1 -0.0337 -1.3472 -1.5739 28 1 -0.3112 -3.0958 -1.3904 29 1 0.9364 -4.6982 -2.7210 30 1 2.1557 -5.1120 -4.8199 31 1 3.0971 -3.2240 -6.0895 32 1 2.8275 -0.9230 -5.2554 33 1 1.6006 -0.5084 -3.1612 34 1 3.4680 -3.0638 1.2281 35 1 2.0217 -2.9741 2.2619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184464261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:47 Heat of formation + Delta-G solvation = -194.743770 kcal Electronic energy + Delta-G solvation = -26466.210599 eV Core-core repulsion = 22014.634705 eV Total energy + Delta-G solvation = -4451.575895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.34828 -48.86450 -48.83266 -41.41932 -40.32522 -39.25593 -36.66594 -33.69284 -33.04703 -31.71826 -31.67376 -28.69370 -27.45056 -26.15594 -23.33198 -22.89991 -22.01357 -20.99256 -19.78879 -19.76918 -19.26449 -18.68907 -17.77068 -17.28442 -16.93461 -16.53607 -16.19420 -15.96942 -15.81997 -15.69792 -15.58741 -15.37858 -15.24255 -15.04733 -14.96050 -14.95707 -14.86595 -14.20327 -14.13478 -13.90231 -13.52982 -13.16503 -13.05960 -12.87954 -12.69206 -12.49495 -12.03491 -11.89437 -11.74153 -11.41984 -10.96988 -10.33496 -9.74068 -9.55682 -9.45731 -8.28789 -6.06071 0.11242 0.50857 0.58124 1.06005 1.44985 1.54166 1.62333 1.99030 2.18161 2.34438 2.71626 2.85516 3.04856 3.07597 3.22186 3.45399 4.05331 4.13405 4.22112 4.28365 4.34262 4.39279 4.51719 4.64174 4.74901 4.88721 5.16363 5.23538 5.30307 5.52436 5.65481 5.66719 5.70295 5.89880 6.02074 6.21889 6.41476 7.14185 7.53337 8.00021 8.74183 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.005318 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.517087 B = 5264.135945 C = 6854.154305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.016 3.984 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.105 0.895 9 N -0.436 5.436 10 C 0.153 3.847 11 C -0.100 4.100 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.455 3.545 18 O -0.605 6.605 19 C -0.157 4.157 20 C 0.331 3.669 21 O -0.374 6.374 22 C 0.436 3.564 23 F -0.172 7.172 24 F -0.160 7.160 25 F -0.161 7.161 26 H 0.274 0.726 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.896 -1.313 -0.567 8.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.483 4.483 8 H 0.122 0.878 9 N -0.153 5.153 10 C 0.030 3.970 11 C -0.101 4.101 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.140 4.140 15 C -0.144 4.144 16 C -0.130 4.130 17 C 0.244 3.756 18 O -0.491 6.491 19 C -0.196 4.196 20 C 0.196 3.804 21 O -0.238 6.238 22 C 0.381 3.619 23 F -0.153 7.153 24 F -0.141 7.141 25 F -0.142 7.142 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.171 0.829 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.208 -2.197 -1.147 7.622 hybrid contribution 0.037 0.736 0.615 0.960 sum 7.245 -1.461 -0.532 7.410 Atomic orbital electron populations 1.69929 1.07797 1.29020 1.45766 1.26100 0.95550 1.02521 0.94710 0.85225 0.79000 0.77469 0.78602 1.20075 1.21299 1.17698 1.19787 0.96732 0.84638 1.47140 0.87765 1.43534 1.39409 1.06990 1.25411 1.20240 0.90913 1.02612 0.83213 1.20428 0.99548 0.93870 0.96284 1.21207 0.99862 0.96079 0.96925 1.21371 0.98341 1.00347 0.94784 1.21424 0.99882 0.92065 1.00641 1.21414 0.98938 0.98171 0.95866 1.21106 0.98113 0.98211 0.95520 1.20479 0.85013 0.84340 0.85765 1.90638 1.56380 1.33036 1.69028 1.21816 1.04910 0.93080 0.99767 1.25304 0.78665 0.93406 0.83039 1.90639 1.36578 1.47970 1.48619 1.20861 0.80342 0.74914 0.85827 1.93227 1.96293 1.30417 1.95410 1.93253 1.38916 1.87083 1.94850 1.93255 1.84537 1.82521 1.53889 0.91631 0.88316 0.94306 0.87989 0.84431 0.82939 0.83649 0.87203 0.82944 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.45 11.42 21.67 0.25 -43.20 16 2 C 0.02 0.70 4.99 84.93 0.42 1.13 16 3 Si 0.97 35.61 29.60 68.60 2.03 37.64 16 4 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.29 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 7 C -0.36 -15.96 8.57 84.04 0.72 -15.24 16 8 H 0.10 4.27 6.97 -2.91 -0.02 4.25 16 9 N -0.44 -20.46 2.50 -639.58 -1.60 -22.06 16 10 C 0.15 7.29 5.09 85.63 0.44 7.72 16 11 C -0.10 -4.23 5.46 -19.87 -0.11 -4.34 16 12 C -0.12 -4.88 9.57 22.27 0.21 -4.66 16 13 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 14 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 15 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 16 C -0.11 -4.17 9.70 22.27 0.22 -3.95 16 17 C 0.46 20.80 7.60 87.66 0.67 21.47 16 18 O -0.60 -31.21 13.04 20.34 0.27 -30.95 16 19 C -0.16 -5.36 4.98 29.10 0.14 -5.21 16 20 C 0.33 11.06 6.69 29.10 0.19 11.25 16 21 O -0.37 -15.57 14.45 21.95 0.32 -15.26 16 22 C 0.44 11.80 3.37 71.24 0.24 12.04 16 23 F -0.17 -4.95 16.92 44.97 0.76 -4.19 16 24 F -0.16 -3.94 17.28 44.97 0.78 -3.16 16 25 F -0.16 -4.07 17.28 44.97 0.78 -3.30 16 26 H 0.27 12.73 8.32 -92.71 -0.77 11.96 16 27 H 0.10 4.94 5.46 -2.39 -0.01 4.93 16 28 H 0.04 1.96 7.44 -2.38 -0.02 1.94 16 29 H 0.10 4.48 7.38 -2.91 -0.02 4.46 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 34 H 0.15 4.42 7.29 -2.38 -0.02 4.40 16 35 H 0.15 4.69 8.14 -2.38 -0.02 4.67 16 Total: -1.00 -59.93 323.22 8.54 -51.39 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.15 Total: 23.56 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 3.82 Total: 9.53 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -1.35 Total: -65.27 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: 0.58 Total: -46.20 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 2.32 Total: -10.64 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -59.93 8.54 -51.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184464261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.357 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds