Wall clock time and date at job start Tue Mar 31 2020 10:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47164 * 2 1 4 4 C 1.50701 * 109.47109 * 120.00355 * 2 1 3 5 5 H 1.07997 * 120.00087 * 120.00559 * 4 2 1 6 6 C 1.37875 * 119.99559 * 299.99826 * 4 2 1 7 7 N 1.31519 * 120.00590 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46877 * 90.00152 * 8 6 4 10 10 H 1.48497 * 109.47315 * 210.00270 * 8 6 4 11 11 H 1.48500 * 109.46926 * 330.00151 * 8 6 4 12 12 N 1.46501 * 109.47305 * 240.00119 * 2 1 3 13 13 S 1.65608 * 120.00079 * 94.99792 * 12 2 1 14 14 O 1.42099 * 106.40241 * 178.54028 * 13 12 2 15 15 O 1.42097 * 106.39895 * 311.46103 * 13 12 2 16 16 C 1.76196 * 107.21621 * 65.00284 * 13 12 2 17 17 C 1.32909 * 125.21411 * 89.99878 * 16 13 12 18 18 C 1.39203 * 115.71122 * 179.97438 * 17 16 13 19 19 C 1.34633 * 113.66177 * 0.02562 * 18 17 16 20 20 S 1.75738 * 125.20881 * 269.69615 * 16 13 12 21 21 C 1.51414 * 124.78450 * 179.97438 * 19 18 17 22 22 C 1.53170 * 108.70227 * 343.68653 * 21 19 18 23 23 C 1.53156 * 108.96308 * 49.66361 * 22 21 19 24 24 C 1.52273 * 123.50888 * 179.97438 * 18 17 16 25 25 H 1.09001 * 109.46973 * 60.00003 * 1 2 3 26 26 H 1.09001 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47389 * 299.99866 * 1 2 3 28 28 H 0.96994 * 120.00508 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00027 * 275.00303 * 12 2 1 30 30 H 1.08010 * 122.14326 * 0.02562 * 17 16 13 31 31 H 1.08994 * 109.59750 * 223.92426 * 21 19 18 32 32 H 1.08992 * 109.59753 * 103.45488 * 21 19 18 33 33 H 1.08998 * 109.55923 * 289.82074 * 22 21 19 34 34 H 1.09000 * 109.55513 * 169.50783 * 22 21 19 35 35 H 1.08994 * 109.49981 * 169.49195 * 23 22 21 36 36 H 1.09002 * 109.49896 * 49.38414 * 23 22 21 37 37 H 1.09004 * 109.58147 * 282.34252 * 24 18 17 38 38 H 1.09000 * 109.58677 * 42.75274 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3444 -0.9491 5.1122 11 1 2.4880 -2.5654 3.7121 12 7 2.0184 -0.6906 -1.1962 13 16 2.4122 0.1773 -2.5506 14 8 2.8777 -0.7634 -3.5086 15 8 1.3247 1.0593 -2.7922 16 6 3.7928 1.1910 -2.1372 17 6 5.0679 0.8401 -2.2686 18 6 6.0009 1.7978 -1.8811 19 6 5.4478 2.9393 -1.4297 20 16 3.6946 2.8239 -1.4950 21 6 6.2268 4.1436 -0.9443 22 6 7.6709 3.7152 -0.6669 23 6 8.2027 2.9436 -1.8783 24 6 7.5066 1.5833 -1.9561 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1608 3.4844 29 1 2.1110 -1.6562 -1.1949 30 1 5.3615 -0.1260 -2.6522 31 1 5.7763 4.5254 -0.0282 32 1 6.2161 4.9188 -1.7104 33 1 7.6986 3.0745 0.2145 34 1 8.2872 4.5981 -0.4974 35 1 9.2775 2.7966 -1.7729 36 1 7.9997 3.5093 -2.7877 37 1 7.8286 0.9594 -1.1223 38 1 7.7599 1.0969 -2.8981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187232669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:29 Heat of formation + Delta-G solvation = -66.327770 kcal Electronic energy + Delta-G solvation = -22369.438681 eV Core-core repulsion = 19043.484885 eV Total energy + Delta-G solvation = -3325.953796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15636 -36.69160 -35.46655 -35.30997 -35.13442 -32.20680 -30.94881 -29.10373 -28.27863 -25.22447 -23.80047 -23.64593 -21.22332 -20.91038 -19.06855 -18.07489 -17.72974 -17.20204 -16.17056 -15.85867 -15.26819 -14.97031 -14.80495 -14.45033 -13.98753 -13.60568 -13.24643 -12.98877 -12.79697 -12.67206 -12.62260 -12.19760 -11.79624 -11.64347 -11.60392 -11.51256 -11.18511 -11.15726 -11.02458 -11.00505 -10.94543 -10.69958 -10.58802 -10.32355 -10.26049 -10.12610 -9.22715 -8.72691 -8.62619 -8.32258 -8.11227 -6.14481 -4.22645 0.71342 1.06284 1.71084 2.07039 2.59417 3.22485 3.29741 3.32350 3.73532 4.26433 4.33213 4.51731 4.68276 4.71951 4.96535 5.03269 5.16514 5.17227 5.32158 5.40032 5.51028 5.59760 5.69477 5.76542 5.81796 5.89380 6.06739 6.14015 6.30599 6.32824 6.56275 6.82246 7.05130 7.08766 7.57075 7.69263 7.80685 8.02616 8.26046 8.80228 9.43496 10.91157 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.005803 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.362931 B = 4824.097026 C = 6119.550583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.043 0.957 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.096 6.096 13 S 2.711 3.289 14 O -0.978 6.978 15 O -0.959 6.959 16 C -0.776 4.776 17 C 0.004 3.996 18 C -0.134 4.134 19 C -0.156 4.156 20 S 0.230 5.770 21 C -0.054 4.054 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.056 4.056 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.264 0.736 29 H 0.410 0.590 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 5.277 -6.767 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.169 3.831 3 H 0.060 0.940 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.858 5.858 13 S 2.796 3.204 14 O -0.968 6.968 15 O -0.949 6.949 16 C -0.976 4.976 17 C -0.031 4.031 18 C -0.147 4.147 19 C -0.276 4.276 20 S 0.501 5.499 21 C -0.093 4.093 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.095 4.095 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.395 6.600 -7.047 14.187 hybrid contribution 1.951 -1.605 1.100 2.755 sum 12.347 4.995 -5.947 14.586 Atomic orbital electron populations 1.22241 0.97974 1.00012 1.01558 1.18582 0.91502 0.92228 0.80811 0.93975 1.21274 1.31986 1.13219 0.89976 0.91790 1.24903 0.94839 0.95016 0.98998 1.69877 1.35954 1.22597 1.23903 0.86498 0.78555 0.80035 0.82328 1.20664 1.21057 1.19805 1.55565 1.80389 1.18400 1.31436 1.01335 0.72981 0.73166 0.72917 1.93519 1.82538 1.61351 1.59388 1.93576 1.49960 1.67092 1.84258 1.35786 1.20492 1.15618 1.25685 1.19674 0.89874 0.99697 0.93830 1.19704 0.96788 0.93503 1.04718 1.25426 0.98109 0.99972 1.04108 1.84212 1.00347 1.06547 1.58841 1.20407 0.94425 0.93109 1.01322 1.21590 0.94638 1.00429 0.98832 1.21554 0.99530 0.95994 0.98613 1.20532 0.88861 0.97633 1.02491 0.95557 0.94829 0.88904 0.92558 0.75578 0.83532 0.89899 0.89906 0.91166 0.91108 0.91364 0.91654 0.90442 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.29 37.16 0.35 -3.50 16 2 C 0.27 6.61 2.76 -69.08 -0.19 6.42 16 3 H 0.04 1.08 7.63 -51.93 -0.40 0.68 16 4 C -0.52 -13.57 8.76 -34.44 -0.30 -13.88 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -1.10 -22.68 5.46 -5.88 -0.03 -22.71 16 13 S 2.71 53.79 5.79 -107.50 -0.62 53.17 16 14 O -0.98 -19.90 17.78 -57.17 -1.02 -20.92 16 15 O -0.96 -21.23 17.17 -57.17 -0.98 -22.21 16 16 C -0.78 -14.20 6.38 28.89 0.18 -14.02 16 17 C 0.00 0.07 9.66 -41.06 -0.40 -0.33 16 18 C -0.13 -1.93 5.78 -104.76 -0.60 -2.53 16 19 C -0.16 -2.26 6.35 -35.23 -0.22 -2.49 16 20 S 0.23 3.97 22.96 -107.50 -2.47 1.51 16 21 C -0.05 -0.58 6.26 -27.44 -0.17 -0.75 16 22 C -0.12 -1.07 5.94 -26.56 -0.16 -1.22 16 23 C -0.12 -1.06 5.89 -26.65 -0.16 -1.21 16 24 C -0.06 -0.60 6.15 -27.10 -0.17 -0.77 16 25 H 0.03 0.60 7.64 -51.93 -0.40 0.21 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.41 7.64 8.83 -34.48 -0.30 7.34 16 30 H 0.15 2.11 8.04 -52.48 -0.42 1.68 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -30.83 337.38 -11.55 -42.37 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.18 Total: 4.40 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -1.94 Total: -32.65 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.60 Total: -46.10 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.00 Total: -43.13 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -3.09 Total: 54.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.83 -11.55 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187232669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.956 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds