Wall clock time and date at job start Tue Mar 31 2020 10:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47164 * 2 1 4 4 C 1.50701 * 109.47109 * 120.00355 * 2 1 3 5 5 H 1.07997 * 120.00087 * 120.00559 * 4 2 1 6 6 C 1.37875 * 119.99559 * 299.99826 * 4 2 1 7 7 N 1.31519 * 120.00590 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46877 * 90.00152 * 8 6 4 10 10 H 1.48497 * 109.47315 * 210.00270 * 8 6 4 11 11 H 1.48500 * 109.46926 * 330.00151 * 8 6 4 12 12 N 1.46501 * 109.47305 * 240.00119 * 2 1 3 13 13 S 1.65608 * 120.00079 * 94.99792 * 12 2 1 14 14 O 1.42099 * 106.40241 * 178.54028 * 13 12 2 15 15 O 1.42097 * 106.39895 * 311.46103 * 13 12 2 16 16 C 1.76196 * 107.21621 * 65.00284 * 13 12 2 17 17 C 1.32909 * 125.21411 * 89.99878 * 16 13 12 18 18 C 1.39203 * 115.71122 * 179.97438 * 17 16 13 19 19 C 1.34633 * 113.66177 * 0.02562 * 18 17 16 20 20 S 1.75738 * 125.20881 * 269.69615 * 16 13 12 21 21 C 1.51414 * 124.78450 * 179.97438 * 19 18 17 22 22 C 1.53170 * 108.70227 * 343.68653 * 21 19 18 23 23 C 1.53156 * 108.96308 * 49.66361 * 22 21 19 24 24 C 1.52273 * 123.50888 * 179.97438 * 18 17 16 25 25 H 1.09001 * 109.46973 * 60.00003 * 1 2 3 26 26 H 1.09001 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47389 * 299.99866 * 1 2 3 28 28 H 0.96994 * 120.00508 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00027 * 275.00303 * 12 2 1 30 30 H 1.08010 * 122.14326 * 0.02562 * 17 16 13 31 31 H 1.08994 * 109.59750 * 223.92426 * 21 19 18 32 32 H 1.08992 * 109.59753 * 103.45488 * 21 19 18 33 33 H 1.08998 * 109.55923 * 289.82074 * 22 21 19 34 34 H 1.09000 * 109.55513 * 169.50783 * 22 21 19 35 35 H 1.08994 * 109.49981 * 169.49195 * 23 22 21 36 36 H 1.09002 * 109.49896 * 49.38414 * 23 22 21 37 37 H 1.09004 * 109.58147 * 282.34252 * 24 18 17 38 38 H 1.09000 * 109.58677 * 42.75274 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3444 -0.9491 5.1122 11 1 2.4880 -2.5654 3.7121 12 7 2.0184 -0.6906 -1.1962 13 16 2.4122 0.1773 -2.5506 14 8 2.8777 -0.7634 -3.5086 15 8 1.3247 1.0593 -2.7922 16 6 3.7928 1.1910 -2.1372 17 6 5.0679 0.8401 -2.2686 18 6 6.0009 1.7978 -1.8811 19 6 5.4478 2.9393 -1.4297 20 16 3.6946 2.8239 -1.4950 21 6 6.2268 4.1436 -0.9443 22 6 7.6709 3.7152 -0.6669 23 6 8.2027 2.9436 -1.8783 24 6 7.5066 1.5833 -1.9561 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1608 3.4844 29 1 2.1110 -1.6562 -1.1949 30 1 5.3615 -0.1260 -2.6522 31 1 5.7763 4.5254 -0.0282 32 1 6.2161 4.9188 -1.7104 33 1 7.6986 3.0745 0.2145 34 1 8.2872 4.5981 -0.4974 35 1 9.2775 2.7966 -1.7729 36 1 7.9997 3.5093 -2.7877 37 1 7.8286 0.9594 -1.1223 38 1 7.7599 1.0969 -2.8981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187232669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:29 Heat of formation + Delta-G solvation = -86.224626 kcal Electronic energy + Delta-G solvation = -22370.301474 eV Core-core repulsion = 19043.484885 eV Total energy + Delta-G solvation = -3326.816589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19479 -38.34721 -37.29223 -36.98497 -36.16757 -34.13926 -31.80424 -30.21071 -30.15872 -27.24450 -24.92768 -24.55389 -22.89637 -22.14544 -20.49061 -19.53432 -19.08847 -18.64393 -17.94539 -17.29217 -17.02547 -16.38053 -15.92003 -15.68815 -15.30198 -14.74852 -14.56787 -14.28879 -14.13640 -13.93754 -13.78464 -13.73903 -13.55378 -13.32755 -13.20227 -13.04668 -12.84385 -12.66282 -12.42350 -12.39090 -12.23855 -12.16796 -12.01067 -11.73166 -11.53874 -11.28968 -11.13945 -10.59980 -10.19776 -9.88802 -9.40897 -8.13632 -6.28336 -0.66403 -0.40066 0.40094 0.83548 1.39808 1.43926 1.45858 1.55240 2.13304 2.44824 2.69004 3.15948 3.51608 3.59227 3.83924 4.00363 4.07511 4.21147 4.36061 4.48818 4.58401 4.62472 4.66552 4.82776 4.88193 4.90081 5.02002 5.08328 5.10926 5.13349 5.20644 5.32832 5.44956 5.50580 5.57551 5.72225 6.00491 6.06664 6.38707 6.81530 7.41037 8.91878 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.005803 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.362931 B = 4824.097026 C = 6119.550583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.276 3.724 3 H 0.027 0.973 4 C -0.538 4.538 5 H 0.068 0.932 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.267 1.267 12 N -1.096 6.096 13 S 2.728 3.272 14 O -0.984 6.984 15 O -0.988 6.988 16 C -0.803 4.803 17 C 0.011 3.989 18 C -0.144 4.144 19 C -0.138 4.138 20 S 0.171 5.829 21 C -0.058 4.058 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.056 4.056 25 H 0.027 0.973 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.418 0.582 30 H 0.164 0.836 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.121 5.184 -6.508 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.578 4.578 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.858 5.858 13 S 2.816 3.184 14 O -0.974 6.974 15 O -0.978 6.978 16 C -1.005 5.005 17 C -0.024 4.024 18 C -0.156 4.156 19 C -0.258 4.258 20 S 0.441 5.559 21 C -0.098 4.098 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.096 4.096 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.254 0.746 30 H 0.181 0.819 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.305 6.465 -6.810 16.285 hybrid contribution 1.133 -1.526 0.971 2.134 sum 14.437 4.939 -5.839 16.338 Atomic orbital electron populations 1.22157 0.98376 1.00109 1.00635 1.18335 0.91213 0.91703 0.81655 0.95568 1.21559 1.32044 1.13420 0.90734 0.91379 1.25656 0.95006 0.95648 1.01738 1.69998 1.36849 1.23756 1.24523 0.85535 0.77952 0.79178 0.78836 1.20269 1.20930 1.19092 1.55374 1.80890 1.18978 1.30532 1.00515 0.72831 0.72676 0.72332 1.93500 1.82689 1.61807 1.59436 1.93531 1.51970 1.67649 1.84674 1.35360 1.20486 1.15898 1.28796 1.20122 0.89498 1.00696 0.92131 1.20171 0.98762 0.92712 1.03982 1.25926 0.95887 1.01370 1.02583 1.84357 1.04196 1.06962 1.60379 1.20668 0.95144 0.92062 1.01880 1.21631 0.93419 1.01502 0.98686 1.21583 1.00714 0.94634 0.98496 1.20704 0.85935 0.99305 1.03606 0.95416 0.94135 0.90831 0.92506 0.74618 0.81887 0.89746 0.87899 0.92000 0.88453 0.88895 0.91303 0.89792 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.61 9.29 71.98 0.67 -6.94 16 2 C 0.28 13.65 2.76 44.25 0.12 13.77 16 3 H 0.03 1.40 7.63 -2.39 -0.02 1.38 16 4 C -0.54 -27.89 8.76 25.60 0.22 -27.67 16 5 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -50.17 11.32 21.45 0.24 -49.93 16 8 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 N -1.10 -45.95 5.46 -172.52 -0.94 -46.89 16 13 S 2.73 110.13 5.79 -56.49 -0.33 109.80 16 14 O -0.98 -39.96 17.78 -128.00 -2.28 -42.24 16 15 O -0.99 -45.22 17.17 -128.00 -2.20 -47.42 16 16 C -0.80 -29.65 6.38 66.65 0.43 -29.23 16 17 C 0.01 0.35 9.66 21.33 0.21 0.56 16 18 C -0.14 -3.87 5.78 -19.95 -0.12 -3.99 16 19 C -0.14 -3.82 6.35 25.09 0.16 -3.66 16 20 S 0.17 6.05 22.96 -56.49 -1.30 4.76 16 21 C -0.06 -1.13 6.26 30.13 0.19 -0.94 16 22 C -0.11 -1.68 5.94 30.70 0.18 -1.49 16 23 C -0.12 -1.59 5.89 30.65 0.18 -1.41 16 24 C -0.06 -1.02 6.15 30.36 0.19 -0.83 16 25 H 0.03 1.31 7.64 -2.39 -0.02 1.29 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.42 15.65 8.83 -96.74 -0.85 14.79 16 30 H 0.16 4.43 8.04 -2.91 -0.02 4.41 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -66.10 337.38 -1.67 -67.77 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.22 Total: 21.04 kcal Atomic # 6 Polarization: -63.22 SS G_CDS: 2.88 Total: -60.34 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -0.70 Total: -96.83 kcal Atomic # 8 Polarization: -85.18 SS G_CDS: -4.47 Total: -89.66 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 116.18 SS G_CDS: -1.62 Total: 114.56 kcal Total: -66.10 -1.67 -67.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187232669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.456 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds