Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 C 1.52995 * 109.47250 * 120.00013 * 2 1 3 5 5 S 1.81407 * 109.46950 * 240.00336 * 2 1 3 6 6 C 1.76195 * 102.99884 * 65.79370 * 5 2 1 7 7 C 1.38732 * 120.10614 * 352.78711 * 6 5 2 8 8 C 1.38245 * 119.99279 * 179.97438 * 7 6 5 9 9 C 1.38263 * 120.20065 * 0.02562 * 8 7 6 10 10 C 1.38282 * 120.20339 * 0.02562 * 9 8 7 11 11 C 1.38646 * 120.00458 * 359.69473 * 10 9 8 12 12 N 1.40009 * 120.09916 * 180.28004 * 11 10 9 13 13 S 1.65606 * 119.99774 * 324.65838 * 12 11 10 14 14 O 1.42102 * 106.40007 * 177.87083 * 13 12 11 15 15 O 1.42094 * 106.40380 * 310.79159 * 13 12 11 16 16 C 1.76203 * 107.21661 * 64.33401 * 13 12 11 17 17 H 1.07994 * 120.00335 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99630 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00235 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99779 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46758 * 90.00310 * 20 18 16 22 22 H 1.48497 * 109.47098 * 209.99731 * 20 18 16 23 23 H 1.48497 * 109.47287 * 330.00503 * 20 18 16 24 24 H 1.09001 * 109.47334 * 78.07467 * 1 2 3 25 25 H 1.09008 * 109.47040 * 198.07223 * 1 2 3 26 26 H 1.08993 * 109.47215 * 318.06895 * 1 2 3 27 27 H 1.08998 * 109.47304 * 50.16506 * 3 2 1 28 28 H 1.08997 * 109.47327 * 170.16521 * 3 2 1 29 29 H 1.09003 * 109.47478 * 290.16355 * 3 2 1 30 30 H 1.09005 * 109.46984 * 60.00524 * 4 2 1 31 31 H 1.08999 * 109.46910 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47243 * 300.00315 * 4 2 1 33 33 H 1.08003 * 120.00029 * 359.94818 * 7 6 5 34 34 H 1.08008 * 119.89547 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.89996 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.99752 * 179.97438 * 10 9 8 37 37 H 0.96996 * 120.00017 * 144.65833 * 12 11 10 38 38 H 0.97002 * 120.00082 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 2.1346 -0.8551 -1.4812 6 6 1.6030 0.1969 -2.7909 7 6 0.7733 1.2761 -2.5234 8 6 0.3581 2.1003 -3.5527 9 6 0.7668 1.8526 -4.8501 10 6 1.5929 0.7786 -5.1262 11 6 2.0192 -0.0501 -4.0996 12 7 2.8604 -1.1346 -4.3760 13 16 2.6865 -1.9778 -5.7906 14 8 3.7049 -2.9689 -5.7947 15 8 1.3038 -2.2837 -5.9080 16 6 3.0647 -0.8703 -7.1078 17 1 3.3452 0.1500 -6.8918 18 6 3.0025 -1.3063 -8.4143 19 7 2.6613 -2.5488 -8.6774 20 14 3.4027 -0.1319 -9.8109 21 1 4.8541 -0.2037 -10.1173 22 1 2.6231 -0.5122 -11.0162 23 1 3.0495 1.2534 -9.4094 24 1 -0.3634 0.2124 -1.0055 25 1 -0.3633 -0.9770 0.3188 26 1 -0.3633 0.7645 0.6867 27 1 1.5404 2.0045 0.7891 28 1 3.1156 1.4476 0.1755 29 1 1.8270 1.9032 -0.9647 30 1 1.6767 -1.7490 1.2491 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -0.2075 2.1392 33 1 0.4515 1.4720 -1.5113 34 1 -0.2883 2.9398 -3.3428 35 1 0.4391 2.4994 -5.6506 36 1 1.9098 0.5879 -6.1409 37 1 3.5451 -1.3920 -3.7389 38 1 2.6172 -2.8555 -9.5966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = -56.626411 kcal Electronic energy + Delta-G solvation = -22482.555515 eV Core-core repulsion = 19157.022402 eV Total energy + Delta-G solvation = -3325.533114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.12947 -36.79484 -35.33298 -34.30746 -34.08328 -33.21408 -31.00000 -28.52412 -27.54401 -27.45696 -26.34043 -22.71012 -22.11862 -20.72516 -18.98921 -18.16623 -17.42789 -16.48360 -16.28414 -15.77217 -15.08141 -14.83362 -14.45198 -14.36751 -14.20398 -14.02633 -13.59519 -13.31544 -12.91728 -12.76022 -12.37608 -12.17918 -12.09596 -11.91220 -11.84915 -11.33159 -11.29084 -11.27274 -10.97912 -10.71880 -10.64370 -10.51030 -10.38559 -10.30195 -9.98270 -9.77554 -9.38463 -9.31743 -8.90148 -7.99144 -7.05221 -6.79541 -5.44310 1.51908 1.63576 1.70585 2.15656 2.57700 3.02571 3.09745 3.15114 3.97008 4.03548 4.50878 4.52277 4.53430 4.55327 4.88615 5.04805 5.31066 5.35815 5.36395 5.51113 5.52604 5.58550 5.60233 5.61473 5.63274 5.77827 5.86330 5.87817 6.02535 6.04760 6.09538 6.36776 6.49366 6.58427 6.80831 6.91082 7.16552 7.27575 7.75238 7.81453 8.76397 10.14291 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004600 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.860971 B = 6085.012260 C = 6833.408769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.054 4.054 3 C -0.168 4.168 4 C -0.127 4.127 5 S -0.111 6.111 6 C -0.122 4.122 7 C -0.131 4.131 8 C -0.140 4.140 9 C -0.090 4.090 10 C -0.160 4.160 11 C 0.217 3.783 12 N -1.067 6.067 13 S 2.702 3.298 14 O -0.996 6.996 15 O -0.988 6.988 16 C -1.023 5.023 17 H 0.112 0.888 18 C 0.134 3.866 19 N -0.839 5.839 20 Si 0.922 3.078 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.260 1.260 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.171 0.829 37 H 0.413 0.587 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 10.096 14.758 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.164 4.164 3 C -0.226 4.226 4 C -0.185 4.185 5 S 0.132 5.868 6 C -0.239 4.239 7 C -0.155 4.155 8 C -0.161 4.161 9 C -0.111 4.111 10 C -0.182 4.182 11 C 0.113 3.887 12 N -0.809 5.809 13 S 2.803 3.197 14 O -0.987 6.987 15 O -0.978 6.978 16 C -1.156 5.156 17 H 0.130 0.870 18 C -0.085 4.085 19 N -0.468 5.468 20 Si 0.746 3.254 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.184 1.184 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.188 0.812 37 H 0.247 0.753 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.669 7.877 14.516 16.730 hybrid contribution 0.013 2.096 -0.670 2.201 sum -2.656 9.973 13.846 17.269 Atomic orbital electron populations 1.22463 0.92607 1.03085 1.03602 1.22879 0.98884 0.98622 0.95999 1.22606 1.02170 0.93851 1.04013 1.21669 1.01801 1.00415 0.94662 1.85391 1.72193 1.32617 0.96560 1.21439 1.04896 1.01734 0.95831 1.21465 0.98482 0.95167 1.00361 1.20930 1.01974 1.00341 0.92854 1.21009 0.96662 0.96914 0.96497 1.22162 1.00231 0.94296 1.01544 1.16950 0.91744 0.88198 0.91810 1.54367 1.43282 1.42578 1.40716 1.01047 0.73499 0.73525 0.71653 1.93395 1.60213 1.58887 1.86162 1.93406 1.35192 1.83825 1.85411 1.30580 1.63438 1.13662 1.07969 0.86967 1.24757 0.89011 0.95327 0.99380 1.69888 1.37560 1.15556 1.23816 0.86126 0.79334 0.80757 0.79216 1.19077 1.19857 1.18372 0.90464 0.91340 0.91788 0.91747 0.91484 0.89820 0.91616 0.91586 0.91084 0.83783 0.86181 0.85584 0.81203 0.75309 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 7.90 37.16 0.29 -1.30 16 2 C -0.05 -0.58 0.86 -90.62 -0.08 -0.66 16 3 C -0.17 -1.64 7.93 37.16 0.29 -1.34 16 4 C -0.13 -1.13 8.39 37.16 0.31 -0.82 16 5 S -0.11 -1.69 19.75 -107.50 -2.12 -3.81 16 6 C -0.12 -2.10 5.82 -38.92 -0.23 -2.32 16 7 C -0.13 -1.87 6.07 -39.40 -0.24 -2.11 16 8 C -0.14 -1.93 10.04 -39.57 -0.40 -2.33 16 9 C -0.09 -1.42 10.04 -39.56 -0.40 -1.82 16 10 C -0.16 -3.14 9.11 -39.41 -0.36 -3.50 16 11 C 0.22 4.36 6.20 -83.49 -0.52 3.84 16 12 N -1.07 -23.11 5.47 32.55 0.18 -22.93 16 13 S 2.70 72.71 4.68 -107.50 -0.50 72.20 16 14 O -1.00 -29.42 18.02 -57.17 -1.03 -30.45 16 15 O -0.99 -29.33 17.70 -57.17 -1.01 -30.34 16 16 C -1.02 -27.19 7.63 30.60 0.23 -26.95 16 17 H 0.11 2.67 6.41 -52.49 -0.34 2.34 16 18 C 0.13 3.62 5.46 -17.82 -0.10 3.53 16 19 N -0.84 -24.11 13.19 55.43 0.73 -23.38 16 20 Si 0.92 19.79 29.54 -169.99 -5.02 14.77 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H 0.08 0.89 5.03 -51.93 -0.26 0.63 16 25 H 0.07 0.67 8.01 -51.92 -0.42 0.25 16 26 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 27 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 28 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 29 H 0.08 0.91 4.19 -51.93 -0.22 0.69 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 1.67 3.14 -52.48 -0.16 1.50 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.17 3.60 4.03 -52.48 -0.21 3.39 16 37 H 0.41 8.00 8.13 -34.48 -0.28 7.72 16 38 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -34.10 326.80 -9.41 -43.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.38 Total: 11.30 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -1.18 Total: -35.79 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.91 Total: -46.31 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -2.04 Total: -60.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 71.02 SS G_CDS: -2.63 Total: 68.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.10 -9.41 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.110 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds