Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 C 1.52995 * 109.47250 * 120.00013 * 2 1 3 5 5 S 1.81407 * 109.46950 * 240.00336 * 2 1 3 6 6 C 1.76195 * 102.99884 * 65.79370 * 5 2 1 7 7 C 1.38732 * 120.10614 * 352.78711 * 6 5 2 8 8 C 1.38245 * 119.99279 * 179.97438 * 7 6 5 9 9 C 1.38263 * 120.20065 * 0.02562 * 8 7 6 10 10 C 1.38282 * 120.20339 * 0.02562 * 9 8 7 11 11 C 1.38646 * 120.00458 * 359.69473 * 10 9 8 12 12 N 1.40009 * 120.09916 * 180.28004 * 11 10 9 13 13 S 1.65606 * 119.99774 * 324.65838 * 12 11 10 14 14 O 1.42102 * 106.40007 * 177.87083 * 13 12 11 15 15 O 1.42094 * 106.40380 * 310.79159 * 13 12 11 16 16 C 1.76203 * 107.21661 * 64.33401 * 13 12 11 17 17 H 1.07994 * 120.00335 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99630 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00235 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99779 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46758 * 90.00310 * 20 18 16 22 22 H 1.48497 * 109.47098 * 209.99731 * 20 18 16 23 23 H 1.48497 * 109.47287 * 330.00503 * 20 18 16 24 24 H 1.09001 * 109.47334 * 78.07467 * 1 2 3 25 25 H 1.09008 * 109.47040 * 198.07223 * 1 2 3 26 26 H 1.08993 * 109.47215 * 318.06895 * 1 2 3 27 27 H 1.08998 * 109.47304 * 50.16506 * 3 2 1 28 28 H 1.08997 * 109.47327 * 170.16521 * 3 2 1 29 29 H 1.09003 * 109.47478 * 290.16355 * 3 2 1 30 30 H 1.09005 * 109.46984 * 60.00524 * 4 2 1 31 31 H 1.08999 * 109.46910 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47243 * 300.00315 * 4 2 1 33 33 H 1.08003 * 120.00029 * 359.94818 * 7 6 5 34 34 H 1.08008 * 119.89547 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.89996 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.99752 * 179.97438 * 10 9 8 37 37 H 0.96996 * 120.00017 * 144.65833 * 12 11 10 38 38 H 0.97002 * 120.00082 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 2.1346 -0.8551 -1.4812 6 6 1.6030 0.1969 -2.7909 7 6 0.7733 1.2761 -2.5234 8 6 0.3581 2.1003 -3.5527 9 6 0.7668 1.8526 -4.8501 10 6 1.5929 0.7786 -5.1262 11 6 2.0192 -0.0501 -4.0996 12 7 2.8604 -1.1346 -4.3760 13 16 2.6865 -1.9778 -5.7906 14 8 3.7049 -2.9689 -5.7947 15 8 1.3038 -2.2837 -5.9080 16 6 3.0647 -0.8703 -7.1078 17 1 3.3452 0.1500 -6.8918 18 6 3.0025 -1.3063 -8.4143 19 7 2.6613 -2.5488 -8.6774 20 14 3.4027 -0.1319 -9.8109 21 1 4.8541 -0.2037 -10.1173 22 1 2.6231 -0.5122 -11.0162 23 1 3.0495 1.2534 -9.4094 24 1 -0.3634 0.2124 -1.0055 25 1 -0.3633 -0.9770 0.3188 26 1 -0.3633 0.7645 0.6867 27 1 1.5404 2.0045 0.7891 28 1 3.1156 1.4476 0.1755 29 1 1.8270 1.9032 -0.9647 30 1 1.6767 -1.7490 1.2491 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -0.2075 2.1392 33 1 0.4515 1.4720 -1.5113 34 1 -0.2883 2.9398 -3.3428 35 1 0.4391 2.4994 -5.6506 36 1 1.9098 0.5879 -6.1409 37 1 3.5451 -1.3920 -3.7389 38 1 2.6172 -2.8555 -9.5966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = -81.200109 kcal Electronic energy + Delta-G solvation = -22483.621111 eV Core-core repulsion = 19157.022402 eV Total energy + Delta-G solvation = -3326.598709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.42319 -37.74451 -37.49925 -36.32211 -35.78423 -35.24347 -32.21903 -29.94002 -28.52750 -28.29333 -28.11461 -24.02132 -23.45738 -21.61996 -20.93941 -19.83691 -19.03628 -18.33240 -17.75842 -17.15219 -16.65874 -16.21886 -15.94960 -15.67977 -15.46801 -15.29667 -15.20964 -14.54488 -14.11868 -14.00092 -13.71113 -13.44939 -13.24019 -13.09079 -13.04853 -12.89287 -12.68778 -12.65398 -12.59390 -12.36898 -12.28214 -12.22007 -12.06882 -11.79382 -11.29660 -11.16341 -10.96032 -10.79066 -10.60710 -9.37011 -8.81898 -8.29850 -7.56228 0.03705 0.28640 0.44738 0.59041 1.34786 1.35382 1.49851 1.52459 2.17845 2.53032 2.71453 2.75582 3.55096 3.74552 3.74995 3.88970 4.10371 4.12089 4.16377 4.37426 4.44607 4.62785 4.63315 4.70140 4.77763 4.81367 4.85386 4.90108 4.90931 5.09210 5.16438 5.24243 5.27169 5.31115 5.35343 5.36483 5.61125 5.79658 5.93334 6.19110 6.69270 8.16149 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004600 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.860971 B = 6085.012260 C = 6833.408769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.039 4.039 3 C -0.167 4.167 4 C -0.126 4.126 5 S -0.169 6.169 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.093 4.093 10 C -0.192 4.192 11 C 0.172 3.828 12 N -1.059 6.059 13 S 2.706 3.294 14 O -1.037 7.037 15 O -1.029 7.029 16 C -1.031 5.031 17 H 0.133 0.867 18 C 0.073 3.927 19 N -0.891 5.891 20 Si 0.995 3.005 21 H -0.256 1.256 22 H -0.262 1.262 23 H -0.240 1.240 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.419 0.581 38 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 13.810 16.438 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.149 4.149 3 C -0.225 4.225 4 C -0.185 4.185 5 S 0.074 5.926 6 C -0.241 4.241 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.114 4.114 10 C -0.214 4.214 11 C 0.070 3.930 12 N -0.805 5.805 13 S 2.809 3.191 14 O -1.028 7.028 15 O -1.019 7.019 16 C -1.165 5.165 17 H 0.151 0.849 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.812 3.188 21 H -0.180 1.180 22 H -0.186 1.186 23 H -0.162 1.162 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.194 0.806 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.254 0.746 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.790 11.580 16.233 20.297 hybrid contribution 0.290 1.001 -0.970 1.424 sum -3.500 12.581 15.263 20.087 Atomic orbital electron populations 1.22475 0.91644 1.04272 1.03458 1.23094 0.99477 0.98922 0.93384 1.22597 1.02490 0.92956 1.04444 1.21713 1.01725 1.00341 0.94695 1.85586 1.73008 1.34588 0.99381 1.21596 1.04936 1.02553 0.94981 1.21965 0.96815 0.93703 1.02275 1.21473 1.00711 1.00704 0.91489 1.21371 0.95578 0.95864 0.98578 1.22146 1.02455 0.96363 1.00420 1.17275 0.93555 0.88516 0.93687 1.53621 1.44308 1.43313 1.39287 1.00520 0.72262 0.73706 0.72594 1.93324 1.60952 1.61236 1.87238 1.93336 1.37109 1.84949 1.86495 1.30800 1.63240 1.14384 1.08041 0.84922 1.26081 0.88238 0.97187 1.02597 1.69991 1.39175 1.17935 1.25084 0.85063 0.79624 0.78803 0.75315 1.18006 1.18604 1.16229 0.92017 0.91478 0.88444 0.88532 0.91733 0.90895 0.92221 0.91890 0.88031 0.80565 0.81494 0.82862 0.83622 0.74563 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.90 71.98 0.57 -2.09 16 2 C -0.04 -0.75 0.86 -10.80 -0.01 -0.76 16 3 C -0.17 -2.63 7.93 71.98 0.57 -2.06 16 4 C -0.13 -1.93 8.39 71.98 0.60 -1.32 16 5 S -0.17 -5.16 19.75 -56.49 -1.12 -6.28 16 6 C -0.12 -4.23 5.82 22.70 0.13 -4.09 16 7 C -0.12 -3.22 6.07 22.39 0.14 -3.09 16 8 C -0.12 -2.95 10.04 22.28 0.22 -2.72 16 9 C -0.09 -2.77 10.04 22.29 0.22 -2.55 16 10 C -0.19 -7.62 9.11 22.38 0.20 -7.42 16 11 C 0.17 7.11 6.20 38.24 0.24 7.35 16 12 N -1.06 -48.59 5.47 -50.94 -0.28 -48.87 16 13 S 2.71 154.24 4.68 -56.49 -0.26 153.97 16 14 O -1.04 -65.15 18.02 -128.00 -2.31 -67.46 16 15 O -1.03 -64.86 17.70 -128.00 -2.27 -67.12 16 16 C -1.03 -56.61 7.63 67.73 0.52 -56.09 16 17 H 0.13 6.50 6.41 -2.91 -0.02 6.48 16 18 C 0.07 3.99 5.46 84.65 0.46 4.46 16 19 N -0.89 -53.10 13.19 21.45 0.28 -52.82 16 20 Si 0.99 40.29 29.54 68.60 2.03 42.32 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 23 H -0.24 -8.82 7.11 99.48 0.71 -8.12 16 24 H 0.06 1.24 5.03 -2.39 -0.01 1.23 16 25 H 0.07 1.15 8.01 -2.38 -0.02 1.13 16 26 H 0.10 1.00 7.87 -2.39 -0.02 0.99 16 27 H 0.10 0.95 7.93 -2.39 -0.02 0.93 16 28 H 0.06 1.07 8.11 -2.39 -0.02 1.05 16 29 H 0.07 1.32 4.19 -2.39 -0.01 1.31 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.18 3.36 3.14 -2.91 -0.01 3.36 16 34 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.15 6.41 4.03 -2.91 -0.01 6.40 16 37 H 0.42 17.49 8.13 -96.75 -0.79 16.70 16 38 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -79.74 326.80 0.27 -79.47 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.32 Total: 37.18 kcal Atomic # 6 Polarization: -74.26 SS G_CDS: 3.87 Total: -70.39 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: 0.00 Total: -101.69 kcal Atomic # 8 Polarization: -130.01 SS G_CDS: -4.57 Total: -134.58 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 149.07 SS G_CDS: -1.38 Total: 147.69 kcal Total: -79.74 0.27 -79.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.733 kcal (2) G-P(sol) polarization free energy of solvation -79.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds