Wall clock time and date at job start Tue Mar 31 2020 10:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36845 * 119.99798 * 2 1 4 4 H 1.08000 * 119.99945 * 185.24969 * 3 2 1 5 5 C 1.39065 * 119.99757 * 5.24317 * 3 2 1 6 6 N 1.31350 * 120.00585 * 5.26475 * 5 3 2 7 7 Si 1.86800 * 119.99625 * 185.26352 * 5 3 2 8 8 H 1.48493 * 109.47175 * 89.99834 * 7 5 3 9 9 H 1.48497 * 109.47127 * 210.00536 * 7 5 3 10 10 H 1.48503 * 109.47108 * 329.99981 * 7 5 3 11 11 C 1.34769 * 120.00162 * 179.97438 * 2 1 3 12 12 O 1.21618 * 120.00215 * 184.00699 * 11 2 1 13 13 C 1.47497 * 120.00135 * 4.01641 * 11 2 1 14 14 C 1.39593 * 120.21765 * 304.71656 * 13 11 2 15 15 C 1.37899 * 119.96605 * 180.29556 * 14 13 11 16 16 C 1.38546 * 120.41045 * 359.72357 * 15 14 13 17 17 C 1.38037 * 120.44782 * 359.97431 * 16 15 14 18 18 C 1.39200 * 120.02308 * 0.02664 * 17 16 15 19 19 C 1.48175 * 120.20552 * 180.02562 * 18 17 16 20 20 C 1.39472 * 120.12422 * 304.62753 * 19 18 17 21 21 C 1.37976 * 119.89479 * 179.97438 * 20 19 18 22 22 C 1.38336 * 120.14512 * 0.24511 * 21 20 19 23 23 C 1.38438 * 120.25271 * 359.49703 * 22 21 20 24 24 Cl 1.73603 * 119.94873 * 180.27282 * 23 22 21 25 25 C 1.38124 * 120.10341 * 0.50820 * 23 22 21 26 26 H 1.09004 * 109.47007 * 174.36702 * 1 2 3 27 27 H 1.08992 * 109.47756 * 294.37200 * 1 2 3 28 28 H 1.08998 * 109.46738 * 54.37600 * 1 2 3 29 29 H 0.96994 * 120.00248 * 179.97438 * 6 5 3 30 30 H 1.08005 * 120.01927 * 0.02562 * 14 13 11 31 31 H 1.08003 * 119.79518 * 179.74055 * 15 14 13 32 32 H 1.08003 * 119.77629 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.99025 * 180.02562 * 17 16 15 34 34 H 1.08010 * 120.05360 * 359.97438 * 20 19 18 35 35 H 1.08004 * 119.92686 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.87454 * 179.72201 * 22 21 20 37 37 H 1.08002 * 120.07556 * 179.72896 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.2258 1.1871 -0.0856 5 6 1.4582 2.3869 0.1101 6 7 0.1612 2.3822 0.3177 7 14 2.3745 4.0080 -0.0374 8 1 2.3960 4.4369 -1.4589 9 1 1.6890 5.0403 0.7809 10 1 3.7671 3.8355 0.4487 11 6 2.1389 -1.1671 0.0005 12 8 3.3529 -1.1684 0.0741 13 6 1.4042 -2.4430 -0.0884 14 6 0.3999 -2.7411 0.8342 15 6 -0.2795 -3.9382 0.7499 16 6 0.0239 -4.8479 -0.2500 17 6 1.0095 -4.5679 -1.1749 18 6 1.7069 -3.3651 -1.1070 19 6 2.7654 -3.0601 -2.0981 20 6 3.8284 -3.9442 -2.2814 21 6 4.8111 -3.6557 -3.2060 22 6 4.7467 -2.4896 -3.9473 23 6 3.6915 -1.6103 -3.7741 24 17 3.6149 -0.1526 -4.7138 25 6 2.7021 -1.8887 -2.8514 26 1 -0.3633 -1.0227 -0.1009 27 1 -0.3634 0.4240 0.9360 28 1 -0.3633 0.5986 -0.8353 29 1 -0.3207 3.2204 0.3949 30 1 0.1580 -2.0365 1.6162 31 1 -1.0532 -4.1678 1.4676 32 1 -0.5144 -5.7825 -0.3062 33 1 1.2398 -5.2822 -1.9516 34 1 3.8823 -4.8532 -1.7006 35 1 5.6348 -4.3397 -3.3480 36 1 5.5207 -2.2660 -4.6666 37 1 1.8814 -1.2003 -2.7135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193803202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:27 Heat of formation + Delta-G solvation = 28.874610 kcal Electronic energy + Delta-G solvation = -23708.706330 eV Core-core repulsion = 20249.393161 eV Total energy + Delta-G solvation = -3459.313169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95164 -38.45967 -37.42579 -36.10646 -34.72453 -32.42892 -31.86082 -30.67210 -30.33435 -28.77923 -26.36207 -24.84378 -23.34391 -22.85719 -22.02623 -20.91972 -19.27962 -17.26901 -16.91785 -16.40768 -15.80414 -15.33739 -15.15118 -14.66752 -14.61789 -14.10817 -13.79898 -13.55839 -13.50610 -13.12471 -13.07531 -12.67299 -12.34437 -11.86207 -11.67621 -11.58243 -11.30812 -11.18985 -11.05338 -11.01328 -10.86739 -10.76454 -10.45407 -10.37823 -10.23031 -9.08749 -9.06880 -8.61130 -8.48891 -8.29104 -8.05889 -7.88952 -6.29389 -3.82702 1.11337 1.50587 1.52139 1.83037 2.45113 3.14432 3.23024 3.28988 3.71601 3.86554 4.06686 4.21829 4.76040 4.82428 5.04555 5.12665 5.15768 5.25816 5.27228 5.39628 5.47052 5.64631 5.72403 5.77432 5.89279 6.02657 6.18479 6.21819 6.40263 6.49790 6.50440 6.56276 6.66791 6.70838 6.85136 7.04352 7.06733 7.17391 7.37240 7.52422 8.02741 8.45064 9.15136 9.39120 9.95012 10.64263 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.006869 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.812637 B = 4075.369073 C = 6214.876958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.432 5.432 3 C -0.294 4.294 4 H 0.106 0.894 5 C 0.028 3.972 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.466 3.534 12 O -0.582 6.582 13 C -0.068 4.068 14 C -0.095 4.095 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.027 4.027 19 C -0.015 4.015 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.027 4.027 24 Cl -0.074 7.074 25 C -0.074 4.074 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.267 0.733 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -12.110 -5.670 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.148 5.148 3 C -0.422 4.422 4 H 0.123 0.877 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.254 3.746 12 O -0.468 6.468 13 C -0.072 4.072 14 C -0.114 4.114 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.028 4.028 19 C -0.016 4.016 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.053 4.053 24 Cl -0.045 7.045 25 C -0.093 4.093 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.017 -11.754 -5.689 13.059 hybrid contribution 0.121 1.144 0.006 1.150 sum 0.138 -10.610 -5.683 12.037 Atomic orbital electron populations 1.22005 0.80294 0.97105 1.04477 1.43634 1.06103 1.04635 1.60450 1.19816 0.93610 0.81860 1.46922 0.87658 1.25330 0.95814 0.99779 0.96486 1.70121 1.06964 1.27327 1.47903 0.85864 0.79535 0.80647 0.78406 1.20203 1.20805 1.19271 1.17660 0.87415 0.82831 0.86698 1.90649 1.13101 1.86447 1.56605 1.20387 0.95721 0.95955 0.95111 1.21352 0.94529 0.96912 0.98627 1.21088 1.00137 0.94000 0.98746 1.21037 0.98111 0.99435 0.95443 1.21036 0.96601 0.95746 0.99453 1.18663 0.95726 0.94144 0.94309 1.18524 0.94535 0.93976 0.94545 1.21182 0.93553 0.99293 0.97790 1.20895 0.98902 0.96799 0.96439 1.20989 0.97259 0.94201 1.00961 1.20731 0.97682 0.89614 0.97322 1.98359 1.98249 1.36255 1.71657 1.21103 0.98429 0.96055 0.93719 0.95006 0.90647 0.91759 0.92234 0.85307 0.85954 0.86094 0.85886 0.85648 0.85339 0.85395 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.38 8.01 59.85 0.48 2.86 16 2 N -0.43 -11.07 3.02 -123.40 -0.37 -11.44 16 3 C -0.29 -8.16 9.55 -15.01 -0.14 -8.30 16 4 H 0.11 3.10 7.19 -52.49 -0.38 2.72 16 5 C 0.03 0.74 5.42 -17.45 -0.09 0.65 16 6 N -0.88 -22.91 9.52 55.50 0.53 -22.38 16 7 Si 0.93 20.93 29.56 -169.99 -5.02 15.91 16 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 C 0.47 11.53 5.32 -12.49 -0.07 11.46 16 12 O -0.58 -16.38 15.78 5.26 0.08 -16.30 16 13 C -0.07 -1.38 4.82 -104.69 -0.50 -1.88 16 14 C -0.10 -1.64 7.42 -39.20 -0.29 -1.93 16 15 C -0.12 -1.66 10.02 -39.59 -0.40 -2.06 16 16 C -0.12 -1.54 10.03 -39.54 -0.40 -1.94 16 17 C -0.11 -1.56 9.60 -39.30 -0.38 -1.93 16 18 C -0.03 -0.49 5.44 -104.53 -0.57 -1.05 16 19 C -0.02 -0.28 4.48 -104.92 -0.47 -0.75 16 20 C -0.10 -1.53 9.61 -39.22 -0.38 -1.91 16 21 C -0.11 -1.54 10.03 -39.64 -0.40 -1.94 16 22 C -0.12 -1.72 9.82 -39.47 -0.39 -2.10 16 23 C -0.03 -0.47 6.31 -39.55 -0.25 -0.72 16 24 Cl -0.07 -1.25 28.95 -51.86 -1.50 -2.76 16 25 C -0.07 -1.43 8.15 -39.19 -0.32 -1.75 16 26 H 0.03 0.63 4.64 -51.93 -0.24 0.39 16 27 H 0.08 1.79 6.93 -51.93 -0.36 1.43 16 28 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.13 2.21 7.44 -52.48 -0.39 1.82 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.78 7.73 -52.49 -0.41 2.37 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -30.87 329.93 -9.69 -40.57 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.82 Total: 4.74 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -4.56 Total: -13.31 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.16 Total: -33.82 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.08 Total: -16.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.87 -9.69 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193803202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.440 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds