Wall clock time and date at job start Tue Mar 31 2020 10:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36845 * 119.99798 * 2 1 4 4 H 1.08000 * 119.99945 * 185.24969 * 3 2 1 5 5 C 1.39065 * 119.99757 * 5.24317 * 3 2 1 6 6 N 1.31350 * 120.00585 * 5.26475 * 5 3 2 7 7 Si 1.86800 * 119.99625 * 185.26352 * 5 3 2 8 8 H 1.48493 * 109.47175 * 89.99834 * 7 5 3 9 9 H 1.48497 * 109.47127 * 210.00536 * 7 5 3 10 10 H 1.48503 * 109.47108 * 329.99981 * 7 5 3 11 11 C 1.34769 * 120.00162 * 179.97438 * 2 1 3 12 12 O 1.21618 * 120.00215 * 184.00699 * 11 2 1 13 13 C 1.47497 * 120.00135 * 4.01641 * 11 2 1 14 14 C 1.39593 * 120.21765 * 304.71656 * 13 11 2 15 15 C 1.37899 * 119.96605 * 180.29556 * 14 13 11 16 16 C 1.38546 * 120.41045 * 359.72357 * 15 14 13 17 17 C 1.38037 * 120.44782 * 359.97431 * 16 15 14 18 18 C 1.39200 * 120.02308 * 0.02664 * 17 16 15 19 19 C 1.48175 * 120.20552 * 180.02562 * 18 17 16 20 20 C 1.39472 * 120.12422 * 304.62753 * 19 18 17 21 21 C 1.37976 * 119.89479 * 179.97438 * 20 19 18 22 22 C 1.38336 * 120.14512 * 0.24511 * 21 20 19 23 23 C 1.38438 * 120.25271 * 359.49703 * 22 21 20 24 24 Cl 1.73603 * 119.94873 * 180.27282 * 23 22 21 25 25 C 1.38124 * 120.10341 * 0.50820 * 23 22 21 26 26 H 1.09004 * 109.47007 * 174.36702 * 1 2 3 27 27 H 1.08992 * 109.47756 * 294.37200 * 1 2 3 28 28 H 1.08998 * 109.46738 * 54.37600 * 1 2 3 29 29 H 0.96994 * 120.00248 * 179.97438 * 6 5 3 30 30 H 1.08005 * 120.01927 * 0.02562 * 14 13 11 31 31 H 1.08003 * 119.79518 * 179.74055 * 15 14 13 32 32 H 1.08003 * 119.77629 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.99025 * 180.02562 * 17 16 15 34 34 H 1.08010 * 120.05360 * 359.97438 * 20 19 18 35 35 H 1.08004 * 119.92686 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.87454 * 179.72201 * 22 21 20 37 37 H 1.08002 * 120.07556 * 179.72896 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.2258 1.1871 -0.0856 5 6 1.4582 2.3869 0.1101 6 7 0.1612 2.3822 0.3177 7 14 2.3745 4.0080 -0.0374 8 1 2.3960 4.4369 -1.4589 9 1 1.6890 5.0403 0.7809 10 1 3.7671 3.8355 0.4487 11 6 2.1389 -1.1671 0.0005 12 8 3.3529 -1.1684 0.0741 13 6 1.4042 -2.4430 -0.0884 14 6 0.3999 -2.7411 0.8342 15 6 -0.2795 -3.9382 0.7499 16 6 0.0239 -4.8479 -0.2500 17 6 1.0095 -4.5679 -1.1749 18 6 1.7069 -3.3651 -1.1070 19 6 2.7654 -3.0601 -2.0981 20 6 3.8284 -3.9442 -2.2814 21 6 4.8111 -3.6557 -3.2060 22 6 4.7467 -2.4896 -3.9473 23 6 3.6915 -1.6103 -3.7741 24 17 3.6149 -0.1526 -4.7138 25 6 2.7021 -1.8887 -2.8514 26 1 -0.3633 -1.0227 -0.1009 27 1 -0.3634 0.4240 0.9360 28 1 -0.3633 0.5986 -0.8353 29 1 -0.3207 3.2204 0.3949 30 1 0.1580 -2.0365 1.6162 31 1 -1.0532 -4.1678 1.4676 32 1 -0.5144 -5.7825 -0.3062 33 1 1.2398 -5.2822 -1.9516 34 1 3.8823 -4.8532 -1.7006 35 1 5.6348 -4.3397 -3.3480 36 1 5.5207 -2.2660 -4.6666 37 1 1.8814 -1.2003 -2.7135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193803202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:26 Heat of formation + Delta-G solvation = 12.581148 kcal Electronic energy + Delta-G solvation = -23709.412868 eV Core-core repulsion = 20249.393161 eV Total energy + Delta-G solvation = -3460.019706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38946 -39.90491 -38.91763 -37.42481 -36.72389 -33.81600 -33.59922 -32.06938 -31.62568 -30.00305 -28.29711 -26.67117 -24.69782 -24.17649 -23.34049 -22.22583 -20.85863 -19.07685 -18.42370 -18.05767 -17.10362 -16.78366 -16.65741 -16.14386 -16.00596 -15.86688 -15.34008 -15.11010 -14.74509 -14.41449 -14.35001 -14.31950 -13.79013 -13.65518 -13.36997 -12.90357 -12.87718 -12.70660 -12.58385 -12.46911 -12.29676 -12.25597 -12.17182 -12.09221 -11.72414 -11.09701 -10.50746 -10.18982 -9.91492 -9.76668 -9.72262 -9.29845 -8.30030 -5.93764 -0.12717 0.24086 0.27662 0.62257 1.14050 1.32120 1.34582 1.46917 2.02575 2.20806 2.60783 2.83029 3.03649 3.15915 3.55599 3.87750 3.92706 4.02698 4.09947 4.21701 4.24611 4.42819 4.50537 4.55325 4.61866 4.69466 4.80776 4.95018 5.06759 5.11549 5.25461 5.30549 5.36794 5.39049 5.43156 5.48263 5.53600 5.60469 5.86450 5.97841 6.05000 6.43562 7.11957 7.42691 7.99250 8.61734 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.006869 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.812637 B = 4075.369073 C = 6214.876958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.449 5.449 3 C -0.334 4.334 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.893 5.893 7 Si 0.986 3.014 8 H -0.271 1.271 9 H -0.265 1.265 10 H -0.275 1.275 11 C 0.471 3.529 12 O -0.628 6.628 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.111 4.111 16 C -0.099 4.099 17 C -0.104 4.104 18 C -0.041 4.041 19 C -0.035 4.035 20 C -0.103 4.103 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.046 4.046 24 Cl -0.082 7.082 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -15.367 -5.967 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.166 5.166 3 C -0.462 4.462 4 H 0.092 0.908 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.809 3.191 8 H -0.197 1.197 9 H -0.189 1.189 10 H -0.200 1.200 11 C 0.261 3.739 12 O -0.516 6.516 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.042 4.042 19 C -0.036 4.036 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.072 4.072 24 Cl -0.053 7.053 25 C -0.124 4.124 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.173 0.827 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.513 -15.019 -5.983 16.175 hybrid contribution 0.264 1.974 0.093 1.994 sum -0.249 -13.044 -5.890 14.315 Atomic orbital electron populations 1.21787 0.78996 0.98406 1.02709 1.43790 1.06962 1.04590 1.61262 1.19656 0.92691 0.83800 1.50005 0.90828 1.26012 0.96725 1.02027 0.95528 1.70201 1.07480 1.28288 1.47326 0.85039 0.78114 0.77224 0.78677 1.19660 1.18914 1.20031 1.18443 0.87157 0.84172 0.84101 1.90573 1.15394 1.87606 1.58047 1.20117 0.98185 0.94582 0.98485 1.21374 0.94626 0.98729 0.98062 1.21496 0.99703 0.92196 0.99470 1.21626 0.96466 1.00411 0.93188 1.21435 0.95858 0.94491 1.00347 1.18895 0.96424 0.95097 0.93745 1.18795 0.95970 0.94162 0.94651 1.21576 0.92692 0.99665 0.98102 1.21436 0.99216 0.96531 0.94532 1.21389 0.96692 0.93959 1.01432 1.20974 0.98536 0.90146 0.97578 1.98342 1.98322 1.36937 1.71700 1.20960 0.98648 0.96795 0.96033 0.92062 0.91967 0.93791 0.91671 0.86381 0.82187 0.81214 0.82636 0.82854 0.80834 0.82688 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.97 8.01 127.77 1.02 6.99 16 2 N -0.45 -24.67 3.02 -662.59 -2.00 -26.67 16 3 C -0.33 -19.85 9.55 84.11 0.80 -19.05 16 4 H 0.07 4.73 7.19 -2.91 -0.02 4.71 16 5 C 0.00 -0.09 5.42 84.96 0.46 0.37 16 6 N -0.89 -47.93 9.52 21.68 0.21 -47.72 16 7 Si 0.99 44.36 29.56 68.60 2.03 46.39 16 8 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 C 0.47 24.83 5.32 86.69 0.46 25.30 16 12 O -0.63 -37.76 15.78 -4.09 -0.06 -37.83 16 13 C -0.11 -4.57 4.82 -19.91 -0.10 -4.66 16 14 C -0.11 -3.69 7.42 22.52 0.17 -3.52 16 15 C -0.11 -2.61 10.02 22.26 0.22 -2.39 16 16 C -0.10 -1.98 10.03 22.30 0.22 -1.76 16 17 C -0.10 -2.54 9.60 22.45 0.22 -2.32 16 18 C -0.04 -1.42 5.44 -19.81 -0.11 -1.53 16 19 C -0.04 -1.28 4.48 -20.06 -0.09 -1.37 16 20 C -0.10 -2.92 9.61 22.51 0.22 -2.70 16 21 C -0.10 -2.45 10.03 22.23 0.22 -2.23 16 22 C -0.12 -3.32 9.82 22.34 0.22 -3.10 16 23 C -0.05 -1.66 6.31 22.29 0.14 -1.52 16 24 Cl -0.08 -2.91 28.95 -2.72 -0.08 -2.98 16 25 C -0.11 -4.30 8.15 22.53 0.18 -4.11 16 26 H 0.06 2.54 4.64 -2.38 -0.01 2.53 16 27 H 0.06 3.11 6.93 -2.39 -0.02 3.09 16 28 H 0.04 2.24 7.19 -2.39 -0.02 2.22 16 29 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.12 4.13 7.44 -2.91 -0.02 4.11 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.09 4.44 7.73 -2.91 -0.02 4.41 16 Total: -1.00 -74.71 329.93 5.46 -69.25 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.10 Total: 17.18 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.27 Total: -17.62 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.79 Total: -74.39 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.06 Total: -37.83 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.08 Total: -2.98 kcal Total: -74.71 5.46 -69.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193803202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.834 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds