Wall clock time and date at job start Tue Mar 31 2020 11:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47420 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47171 * 30.00659 * 3 2 1 6 6 H 1.48498 * 109.47074 * 150.00393 * 3 2 1 7 7 C 1.37880 * 119.99437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00211 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.53502 * 114.20184 * 180.02562 * 9 7 2 11 11 N 1.47071 * 87.98345 * 220.14930 * 10 9 7 12 12 C 1.34779 * 136.05809 * 207.08329 * 11 10 9 13 13 O 1.21515 * 119.99846 * 0.02562 * 12 11 10 14 14 O 1.34677 * 120.00025 * 180.02562 * 12 11 10 15 15 C 1.35938 * 117.00174 * 185.80652 * 14 12 11 16 16 C 1.38739 * 120.05629 * 267.47411 * 15 14 12 17 17 C 1.38118 * 119.94847 * 180.25036 * 16 15 14 18 18 C 1.38291 * 120.05462 * 359.72486 * 17 16 15 19 19 C 1.38245 * 120.10398 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.06035 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.02819 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47424 * 359.97438 * 21 20 19 23 23 F 1.39902 * 109.46862 * 239.99791 * 21 20 19 24 24 F 1.39898 * 109.47246 * 120.00422 * 21 20 19 25 25 C 1.47065 * 87.88562 * 27.34314 * 11 10 9 26 26 H 0.97010 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.28537 * 313.06697 * 9 7 2 28 28 H 1.08997 * 113.46411 * 105.37402 * 10 9 7 29 29 H 1.09000 * 113.52146 * 334.93650 * 10 9 7 30 30 H 1.08009 * 120.02658 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.97888 * 179.74660 * 17 16 15 32 32 H 1.08001 * 119.94984 * 180.02562 * 18 17 16 33 33 H 1.08008 * 119.96809 * 180.02562 * 19 18 17 34 34 H 1.09002 * 113.46694 * 87.43687 * 25 11 10 35 35 H 1.09000 * 113.47349 * 217.87482 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.1407 -2.5943 -0.0023 11 7 5.1446 -2.0872 0.9453 12 6 6.4189 -2.3897 1.2634 13 8 6.9907 -3.2937 0.6870 14 8 7.0584 -1.6900 2.2201 15 6 8.3766 -1.9639 2.4081 16 6 8.7630 -2.9066 3.3498 17 6 10.1031 -3.1795 3.5426 18 6 11.0593 -2.5179 2.7939 19 6 10.6765 -1.5827 1.8506 20 6 9.3370 -1.3070 1.6532 21 6 8.9206 -0.2869 0.6252 22 9 10.0579 0.2413 0.0050 23 9 8.2106 0.7431 1.2514 24 9 8.1065 -0.8977 -0.3347 25 6 4.1439 -1.1091 1.3978 26 1 -0.4850 0.8401 0.0004 27 1 3.9420 -0.5104 -0.7325 28 1 4.5600 -2.8808 -0.9667 29 1 3.4934 -3.3625 0.4208 30 1 8.0165 -3.4242 3.9342 31 1 10.4047 -3.9103 4.2785 32 1 12.1068 -2.7329 2.9458 33 1 11.4251 -1.0676 1.2668 34 1 3.4968 -1.4850 2.1903 35 1 4.5658 -0.1303 1.6262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195168023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:33 Heat of formation + Delta-G solvation = -144.191050 kcal Electronic energy + Delta-G solvation = -26927.494925 eV Core-core repulsion = 22478.111161 eV Total energy + Delta-G solvation = -4449.383764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.16309 -47.72121 -47.56247 -41.22089 -39.41593 -38.21642 -36.20633 -32.72716 -32.32988 -30.96574 -29.58078 -26.31291 -25.62939 -25.20140 -23.38518 -22.49243 -21.10896 -19.53055 -18.68978 -18.49869 -18.43187 -17.68445 -17.50311 -17.03268 -16.50078 -15.71963 -15.19261 -14.91847 -14.57427 -14.50624 -14.34774 -14.10909 -14.01152 -13.74987 -13.73571 -13.66575 -13.37371 -13.01695 -12.90910 -12.53282 -12.14447 -11.96983 -11.91164 -11.66429 -10.95419 -10.91487 -10.76847 -10.42256 -10.10058 -9.70570 -9.60909 -9.33377 -9.16292 -8.70229 -8.29297 -6.24833 -4.28669 0.46023 0.76243 2.24464 2.56785 3.01399 3.17569 3.21739 3.31051 3.34037 3.60293 3.88820 4.09082 4.29247 4.37151 4.50065 4.57377 4.85040 4.94958 4.97705 5.02012 5.36989 5.63954 5.73226 5.80166 5.81831 5.89450 5.93990 6.08154 6.14521 6.30522 6.35872 6.40465 6.64109 7.07196 7.48205 8.11791 8.30876 8.51892 8.77840 9.35764 10.86650 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.004338 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109280 B = 6452.975304 C = 7151.352554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.140 3.860 11 N -0.626 5.626 12 C 0.667 3.333 13 O -0.566 6.566 14 O -0.310 6.310 15 C 0.167 3.833 16 C -0.120 4.120 17 C -0.074 4.074 18 C -0.123 4.123 19 C -0.062 4.062 20 C -0.191 4.191 21 C 0.507 3.493 22 F -0.178 7.178 23 F -0.169 7.169 24 F -0.166 7.166 25 C 0.087 3.913 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.174 -2.649 6.792 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.100 0.900 9 C -0.024 4.024 10 C 0.020 3.980 11 N -0.366 5.366 12 C 0.423 3.577 13 O -0.454 6.454 14 O -0.223 6.223 15 C 0.123 3.877 16 C -0.138 4.138 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.080 4.080 20 C -0.193 4.193 21 C 0.453 3.547 22 F -0.160 7.160 23 F -0.151 7.151 24 F -0.147 7.147 25 C -0.035 4.035 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.108 0.892 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.385 -2.847 6.653 22.576 hybrid contribution 0.332 1.114 -0.016 1.162 sum 21.716 -1.734 6.637 22.774 Atomic orbital electron populations 1.69886 1.06362 1.27463 1.48812 1.24978 0.94669 0.99163 0.93595 0.86938 0.80685 0.83526 0.79006 1.19984 1.21087 1.18317 1.20696 0.87000 0.95054 1.52449 0.89964 1.20833 0.97048 0.92433 0.92092 1.23276 0.84140 0.99917 0.90653 1.48772 1.07097 1.39089 1.41601 1.17655 0.81933 0.79864 0.78209 1.90982 1.66668 1.32579 1.55171 1.84326 1.20689 1.62557 1.54768 1.17944 0.80551 0.94505 0.94665 1.21340 0.97527 0.96090 0.98858 1.21274 0.91788 0.98048 0.98130 1.21222 1.00458 0.96382 0.96015 1.20941 0.93283 0.96617 0.97155 1.20340 0.96057 1.02583 1.00281 1.18154 0.75041 0.80697 0.80837 1.93146 1.51018 1.87646 1.84147 1.93251 1.78980 1.60723 1.82118 1.93297 1.73332 1.82651 1.65444 1.24139 0.86245 0.90919 1.02243 0.92239 0.91745 0.91335 0.89446 0.83981 0.84177 0.84237 0.83748 0.89245 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.07 27.15 -169.99 -4.62 15.46 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.68 5.72 56.52 0.32 -5.36 16 7 C -0.51 -13.09 9.38 -34.44 -0.32 -13.41 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.00 -0.09 2.97 -91.12 -0.27 -0.36 16 10 C 0.14 2.75 8.17 -8.50 -0.07 2.68 16 11 N -0.63 -12.72 3.69 -190.89 -0.70 -13.42 16 12 C 0.67 13.56 7.14 54.06 0.39 13.94 16 13 O -0.57 -12.39 16.58 -19.28 -0.32 -12.71 16 14 O -0.31 -5.68 9.23 -24.74 -0.23 -5.90 16 15 C 0.17 2.57 4.85 -39.22 -0.19 2.38 16 16 C -0.12 -1.43 9.99 -39.44 -0.39 -1.83 16 17 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 18 C -0.12 -1.00 10.04 -39.56 -0.40 -1.40 16 19 C -0.06 -0.65 9.43 -39.60 -0.37 -1.02 16 20 C -0.19 -2.72 5.38 -104.48 -0.56 -3.28 16 21 C 0.51 7.97 2.99 36.00 0.11 8.08 16 22 F -0.18 -2.42 15.97 2.25 0.04 -2.38 16 23 F -0.17 -2.82 16.93 2.25 0.04 -2.79 16 24 F -0.17 -3.08 15.06 2.25 0.03 -3.04 16 25 C 0.09 1.76 7.67 -8.37 -0.06 1.70 16 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.06 1.43 7.03 -51.93 -0.37 1.06 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 30 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.14 1.18 7.16 -52.48 -0.38 0.81 16 34 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 35 H 0.06 1.29 7.15 -51.93 -0.37 0.92 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -30.96 318.23 -6.12 -37.07 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.28 Total: -0.97 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.65 Total: 8.47 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.07 Total: -38.00 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.55 Total: -18.61 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.21 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.62 Total: 15.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.96 -6.12 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195168023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.119 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds