Wall clock time and date at job start Tue Mar 31 2020 11:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47420 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47171 * 30.00659 * 3 2 1 6 6 H 1.48498 * 109.47074 * 150.00393 * 3 2 1 7 7 C 1.37880 * 119.99437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00211 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99584 * 179.97438 * 7 2 1 10 10 C 1.53502 * 114.20184 * 180.02562 * 9 7 2 11 11 N 1.47071 * 87.98345 * 220.14930 * 10 9 7 12 12 C 1.34779 * 136.05809 * 207.08329 * 11 10 9 13 13 O 1.21515 * 119.99846 * 0.02562 * 12 11 10 14 14 O 1.34677 * 120.00025 * 180.02562 * 12 11 10 15 15 C 1.35938 * 117.00174 * 185.80652 * 14 12 11 16 16 C 1.38739 * 120.05629 * 267.47411 * 15 14 12 17 17 C 1.38118 * 119.94847 * 180.25036 * 16 15 14 18 18 C 1.38291 * 120.05462 * 359.72486 * 17 16 15 19 19 C 1.38245 * 120.10398 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.06035 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.02819 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47424 * 359.97438 * 21 20 19 23 23 F 1.39902 * 109.46862 * 239.99791 * 21 20 19 24 24 F 1.39898 * 109.47246 * 120.00422 * 21 20 19 25 25 C 1.47065 * 87.88562 * 27.34314 * 11 10 9 26 26 H 0.97010 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08993 * 113.28537 * 313.06697 * 9 7 2 28 28 H 1.08997 * 113.46411 * 105.37402 * 10 9 7 29 29 H 1.09000 * 113.52146 * 334.93650 * 10 9 7 30 30 H 1.08009 * 120.02658 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.97888 * 179.74660 * 17 16 15 32 32 H 1.08001 * 119.94984 * 180.02562 * 18 17 16 33 33 H 1.08008 * 119.96809 * 180.02562 * 19 18 17 34 34 H 1.09002 * 113.46694 * 87.43687 * 25 11 10 35 35 H 1.09000 * 113.47349 * 217.87482 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.1407 -2.5943 -0.0023 11 7 5.1446 -2.0872 0.9453 12 6 6.4189 -2.3897 1.2634 13 8 6.9907 -3.2937 0.6870 14 8 7.0584 -1.6900 2.2201 15 6 8.3766 -1.9639 2.4081 16 6 8.7630 -2.9066 3.3498 17 6 10.1031 -3.1795 3.5426 18 6 11.0593 -2.5179 2.7939 19 6 10.6765 -1.5827 1.8506 20 6 9.3370 -1.3070 1.6532 21 6 8.9206 -0.2869 0.6252 22 9 10.0579 0.2413 0.0050 23 9 8.2106 0.7431 1.2514 24 9 8.1065 -0.8977 -0.3347 25 6 4.1439 -1.1091 1.3978 26 1 -0.4850 0.8401 0.0004 27 1 3.9420 -0.5104 -0.7325 28 1 4.5600 -2.8808 -0.9667 29 1 3.4934 -3.3625 0.4208 30 1 8.0165 -3.4242 3.9342 31 1 10.4047 -3.9103 4.2785 32 1 12.1068 -2.7329 2.9458 33 1 11.4251 -1.0676 1.2668 34 1 3.4968 -1.4850 2.1903 35 1 4.5658 -0.1303 1.6262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195168023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:32 Heat of formation + Delta-G solvation = -162.639433 kcal Electronic energy + Delta-G solvation = -26928.294907 eV Core-core repulsion = 22478.111161 eV Total energy + Delta-G solvation = -4450.183746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.37294 -48.89850 -48.84157 -42.50354 -40.78103 -39.45006 -37.66256 -34.72555 -33.20811 -32.13667 -31.04041 -27.67596 -27.04851 -26.89367 -24.48120 -23.53208 -22.45335 -21.12693 -19.84777 -19.69677 -19.65474 -19.33146 -18.97589 -18.56977 -17.77229 -16.73608 -16.60857 -16.18590 -15.86062 -15.77855 -15.70569 -15.33579 -15.24858 -15.21707 -14.99919 -14.95295 -14.90582 -14.51830 -13.88956 -13.75453 -13.61809 -13.54987 -13.09762 -12.78530 -12.70655 -12.60593 -12.07756 -12.03091 -11.88071 -11.46964 -11.25971 -10.71233 -10.43207 -10.06926 -9.90782 -8.30453 -6.37598 -0.48085 -0.06325 0.96657 1.38243 1.43245 1.43712 1.49400 1.51719 2.30566 2.35626 2.48401 2.77435 2.80809 3.00318 3.18875 3.61188 3.85111 3.92921 4.01108 4.15929 4.16390 4.18448 4.32904 4.50671 4.57893 4.67060 4.71757 4.77792 4.93644 5.05647 5.18133 5.20625 5.29079 5.55141 5.66375 6.24744 6.54758 6.70310 7.01185 7.30052 8.84426 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.004338 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109280 B = 6452.975304 C = 7151.352554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.030 3.970 3 Si 0.929 3.071 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.509 4.509 8 H 0.053 0.947 9 C -0.011 4.011 10 C 0.144 3.856 11 N -0.632 5.632 12 C 0.669 3.331 13 O -0.586 6.586 14 O -0.314 6.314 15 C 0.115 3.885 16 C -0.128 4.128 17 C -0.062 4.062 18 C -0.102 4.102 19 C -0.064 4.064 20 C -0.211 4.211 21 C 0.500 3.500 22 F -0.167 7.167 23 F -0.180 7.180 24 F -0.188 7.188 25 C 0.097 3.903 26 H 0.269 0.731 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.148 0.852 31 H 0.183 0.817 32 H 0.187 0.813 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.827 -3.004 8.154 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.170 4.170 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.547 4.547 8 H 0.072 0.928 9 C -0.030 4.030 10 C 0.025 3.975 11 N -0.372 5.372 12 C 0.426 3.574 13 O -0.477 6.477 14 O -0.227 6.227 15 C 0.072 3.928 16 C -0.147 4.147 17 C -0.079 4.079 18 C -0.119 4.119 19 C -0.082 4.082 20 C -0.213 4.213 21 C 0.446 3.554 22 F -0.149 7.149 23 F -0.162 7.162 24 F -0.170 7.170 25 C -0.025 4.025 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.166 0.834 31 H 0.201 0.799 32 H 0.204 0.796 33 H 0.184 0.816 34 H 0.114 0.886 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.070 -3.203 8.030 26.519 hybrid contribution -0.644 1.118 -0.403 1.352 sum 24.426 -2.085 7.627 25.673 Atomic orbital electron populations 1.70007 1.08071 1.28362 1.51082 1.25701 0.95213 1.02514 0.93521 0.86025 0.80066 0.79488 0.79151 1.19754 1.21031 1.16588 1.20834 0.88880 0.93864 1.51155 0.92842 1.20724 0.94797 0.94175 0.93331 1.23189 0.84169 0.98840 0.91326 1.48688 1.07477 1.39195 1.41841 1.17697 0.81613 0.79745 0.78353 1.90941 1.67070 1.33570 1.56072 1.84340 1.22612 1.62138 1.53629 1.18472 0.79263 0.97620 0.97413 1.21625 0.99583 0.95322 0.98145 1.21814 0.90128 0.97842 0.98132 1.21819 1.02682 0.93875 0.93563 1.21357 0.91923 0.97075 0.97829 1.20432 0.97579 1.02898 1.00399 1.18488 0.74915 0.80998 0.80972 1.93153 1.50111 1.87550 1.84045 1.93217 1.79409 1.61307 1.82241 1.93244 1.74202 1.83058 1.66471 1.23924 0.86189 0.91300 1.01076 0.92171 0.91712 0.90549 0.88579 0.83436 0.79941 0.79579 0.81641 0.88579 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 2 C 0.03 1.62 5.47 84.65 0.46 2.08 16 3 Si 0.93 41.46 27.15 68.60 1.86 43.32 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.24 -10.08 5.72 99.48 0.57 -9.51 16 7 C -0.51 -26.39 9.38 25.60 0.24 -26.15 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 C -0.01 -0.46 2.97 -11.12 -0.03 -0.49 16 10 C 0.14 5.68 8.17 83.18 0.68 6.36 16 11 N -0.63 -25.56 3.69 -988.22 -3.64 -29.20 16 12 C 0.67 27.17 7.14 129.79 0.93 28.09 16 13 O -0.59 -25.70 16.58 19.79 0.33 -25.37 16 14 O -0.31 -11.50 9.23 0.26 0.00 -11.50 16 15 C 0.11 3.44 4.85 22.50 0.11 3.55 16 16 C -0.13 -2.79 9.99 22.36 0.22 -2.57 16 17 C -0.06 -0.78 10.04 22.25 0.22 -0.56 16 18 C -0.10 -1.14 10.04 22.28 0.22 -0.91 16 19 C -0.06 -1.13 9.43 22.26 0.21 -0.92 16 20 C -0.21 -5.76 5.38 -19.77 -0.11 -5.87 16 21 C 0.50 15.58 2.99 71.23 0.21 15.80 16 22 F -0.17 -4.38 15.97 44.97 0.72 -3.66 16 23 F -0.18 -6.03 16.93 44.97 0.76 -5.27 16 24 F -0.19 -7.06 15.06 44.97 0.68 -6.38 16 25 C 0.10 3.90 7.67 83.27 0.64 4.54 16 26 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 27 H 0.06 2.84 7.03 -2.39 -0.02 2.82 16 28 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 29 H 0.10 3.59 8.10 -2.39 -0.02 3.57 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 33 H 0.17 2.11 7.16 -2.91 -0.02 2.09 16 34 H 0.10 3.71 8.10 -2.39 -0.02 3.69 16 35 H 0.07 2.64 7.15 -2.39 -0.02 2.63 16 Total: -1.00 -69.62 318.23 6.02 -63.60 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.01 Total: 5.92 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 4.01 Total: 22.96 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.34 Total: -83.62 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: 0.33 Total: -36.87 kcal Atomic # 9 Polarization: -17.47 SS G_CDS: 2.16 Total: -15.31 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.86 Total: 43.32 kcal Total: -69.62 6.02 -63.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195168023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.043 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds