Wall clock time and date at job start Tue Mar 31 2020 11:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86796 * 120.00692 * 2 1 4 4 H 1.48502 * 109.47169 * 240.00032 * 3 2 1 5 5 H 1.48503 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48488 * 109.47291 * 119.99659 * 3 2 1 7 7 C 1.39675 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.40964 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.38991 * 126.93340 * 359.97438 * 9 7 2 11 11 N 1.35597 * 109.23737 * 179.97438 * 10 9 7 12 12 H 0.97005 * 124.70695 * 180.02562 * 11 10 9 13 13 C 1.38178 * 110.59544 * 0.02562 * 11 10 9 14 14 C 1.39167 * 132.73566 * 179.97438 * 13 11 10 15 15 C 1.38013 * 120.24376 * 180.02562 * 14 13 11 16 16 C 1.38351 * 120.77262 * 359.97438 * 15 14 13 17 17 C 1.39169 * 120.10510 * 0.25252 * 16 15 14 18 18 C 1.48127 * 120.28547 * 179.66375 * 17 16 15 19 19 C 1.39511 * 120.08194 * 64.88239 * 18 17 16 20 20 C 1.38003 * 119.92615 * 179.97438 * 19 18 17 21 21 F 1.35098 * 119.95547 * 180.02562 * 20 19 18 22 22 C 1.39081 * 120.08291 * 359.97438 * 20 19 18 23 23 O 1.35911 * 119.91834 * 180.02562 * 22 20 19 24 24 C 1.38717 * 120.16723 * 0.04332 * 22 20 19 25 25 C 1.38172 * 120.07193 * 359.70221 * 24 22 20 26 26 F 1.35096 * 120.04342 * 180.29693 * 25 24 22 27 27 C 1.40217 * 107.88446 * 359.97438 * 13 11 10 28 28 H 0.96999 * 119.99629 * 0.02562 * 1 2 3 29 29 H 1.08003 * 125.38468 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.87949 * 0.02562 * 14 13 11 31 31 H 1.07997 * 119.61061 * 180.02562 * 15 14 13 32 32 H 1.08011 * 119.94775 * 180.02562 * 16 15 14 33 33 H 1.08006 * 120.03595 * 359.95657 * 19 18 17 34 34 H 0.96702 * 114.00114 * 90.00041 * 23 22 20 35 35 H 1.07999 * 119.96122 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2451 1.6176 0.0000 4 1 3.0988 1.6962 -1.2125 5 1 1.2801 2.7464 -0.0006 6 1 3.0987 1.6962 1.2124 7 6 2.0092 -1.2097 0.0005 8 1 3.0891 -1.2098 0.0010 9 6 1.3042 -2.4304 0.0005 10 6 -0.0756 -2.5980 0.0005 11 7 -0.3647 -3.9228 0.0000 12 1 -1.2615 -4.2924 -0.0005 13 6 0.7954 -4.6735 0.0002 14 6 1.0330 -6.0447 0.0002 15 6 2.3265 -6.5261 0.0009 16 6 3.4045 -5.6589 0.0011 17 6 3.1938 -4.2833 0.0058 18 6 4.3450 -3.3512 0.0135 19 6 5.2148 -3.3052 -1.0764 20 6 6.2860 -2.4352 -1.0661 21 9 7.1283 -2.3898 -2.1214 22 6 6.4990 -1.6045 0.0289 23 8 7.5547 -0.7487 0.0353 24 6 5.6367 -1.6476 1.1146 25 6 4.5590 -2.5123 1.1091 26 9 3.7162 -2.5494 2.1643 27 6 1.8819 -3.7871 0.0003 28 1 -0.4849 0.8401 -0.0004 29 1 -0.8026 -1.7994 0.0001 30 1 0.2022 -6.7347 -0.0003 31 1 2.4991 -7.5922 0.0006 32 1 4.4113 -6.0502 0.0012 33 1 5.0500 -3.9499 -1.9271 34 1 7.3578 0.1216 -0.3375 35 1 5.8054 -1.0013 1.9633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211359645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:17 Heat of formation + Delta-G solvation = -54.208520 kcal Electronic energy + Delta-G solvation = -25955.637305 eV Core-core repulsion = 21940.924701 eV Total energy + Delta-G solvation = -4014.712604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.66093 -48.27970 -39.90881 -39.04014 -36.84188 -35.57402 -33.56157 -31.67802 -30.21451 -29.16741 -28.09665 -27.40745 -24.84153 -23.29681 -22.50355 -21.01319 -20.64061 -19.51727 -18.61154 -17.67826 -17.03855 -16.51578 -16.31238 -15.83532 -15.51064 -15.20678 -14.82243 -14.51677 -14.39823 -14.25718 -13.87653 -13.69096 -13.26096 -13.21383 -13.08533 -12.57591 -12.54436 -11.72889 -11.54073 -11.24841 -11.19875 -11.11698 -10.95723 -10.72446 -10.59507 -10.48392 -9.83889 -9.71040 -9.46374 -8.82581 -8.43447 -7.93918 -7.15367 -6.67216 -6.53260 -4.03393 1.07733 1.28961 2.00786 2.51081 3.05040 3.11057 3.12889 3.51114 4.03792 4.04768 4.14899 4.38932 4.48713 4.61913 4.74334 4.90366 5.07595 5.40166 5.54992 5.62407 5.75417 5.85643 5.88645 6.12842 6.13434 6.31653 6.36508 6.39069 6.56845 6.71199 6.94286 7.03649 7.11727 7.25994 7.33947 7.51768 7.60624 7.79001 7.94098 8.22394 8.60444 8.96237 9.09105 9.14843 10.44926 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.007919 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.277113 B = 3534.766477 C = 5549.465327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.410 4.410 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.088 4.088 11 N -0.590 5.590 12 H 0.395 0.605 13 C 0.083 3.917 14 C -0.140 4.140 15 C -0.119 4.119 16 C -0.163 4.163 17 C -0.011 4.011 18 C -0.027 4.027 19 C -0.101 4.101 20 C 0.056 3.944 21 F -0.135 7.135 22 C 0.092 3.908 23 O -0.488 6.488 24 C -0.163 4.163 25 C 0.148 3.852 26 F -0.114 7.114 27 C -0.102 4.102 28 H 0.273 0.727 29 H 0.193 0.807 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.392 0.608 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 -3.928 -0.282 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.013 3.987 10 C -0.212 4.212 11 N -0.191 5.191 12 H 0.228 0.772 13 C -0.028 4.028 14 C -0.162 4.162 15 C -0.138 4.138 16 C -0.183 4.183 17 C -0.012 4.012 18 C -0.029 4.029 19 C -0.120 4.120 20 C 0.037 3.963 21 F -0.114 7.114 22 C 0.047 3.953 23 O -0.298 6.298 24 C -0.183 4.183 25 C 0.128 3.872 26 F -0.092 7.092 27 C -0.109 4.109 28 H 0.084 0.916 29 H 0.210 0.790 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.165 0.835 34 H 0.248 0.752 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.126 -4.111 -0.019 7.377 hybrid contribution -0.364 1.132 -0.235 1.212 sum 5.762 -2.978 -0.254 6.491 Atomic orbital electron populations 1.69426 1.07055 1.27893 1.42023 1.25570 0.94781 1.00419 0.94526 0.86378 0.79978 0.81061 0.79483 1.19398 1.20515 1.19255 1.18733 0.93793 0.88983 1.42774 0.91167 1.18008 0.90543 0.89031 1.01108 1.23432 0.98186 0.81946 1.17622 1.41578 1.05183 1.06710 1.65653 0.77156 1.18133 0.87194 0.91884 1.05620 1.19905 0.96643 0.91551 1.08084 1.20298 0.91678 0.98110 1.03763 1.20543 0.97997 0.91447 1.08313 1.17722 0.89745 0.91454 1.02282 1.18668 0.95186 0.96584 0.92422 1.20945 0.92850 0.99042 0.99139 1.17812 0.91819 1.01561 0.85150 1.91468 1.69537 1.95740 1.54665 1.17952 0.89861 0.94913 0.92620 1.84815 1.32959 1.27001 1.84992 1.21108 0.94595 1.01913 1.00639 1.17348 0.88413 0.96030 0.85367 1.91578 1.69032 1.94983 1.53585 1.19310 0.90284 0.94958 1.06379 0.91575 0.79042 0.87895 0.87122 0.87274 0.83512 0.75180 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.15 10.33 55.54 0.57 -20.58 16 2 C 0.06 1.43 5.49 -17.33 -0.10 1.33 16 3 Si 0.90 19.15 29.56 -169.99 -5.02 14.13 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.41 -10.64 8.40 -38.01 -0.32 -10.96 16 8 H 0.07 1.75 4.71 -52.49 -0.25 1.51 16 9 C 0.02 0.47 6.10 -104.83 -0.64 -0.17 16 10 C -0.09 -2.15 10.89 -15.61 -0.17 -2.32 16 11 N -0.59 -12.39 5.99 -9.81 -0.06 -12.45 16 12 H 0.40 6.74 8.96 -40.82 -0.37 6.37 16 13 C 0.08 1.78 7.23 -83.91 -0.61 1.18 16 14 C -0.14 -2.55 10.06 -39.32 -0.40 -2.95 16 15 C -0.12 -2.02 10.00 -39.62 -0.40 -2.42 16 16 C -0.16 -2.93 9.73 -39.19 -0.38 -3.31 16 17 C -0.01 -0.24 5.02 -104.73 -0.53 -0.76 16 18 C -0.03 -0.53 4.34 -104.84 -0.45 -0.99 16 19 C -0.10 -1.72 9.70 -39.19 -0.38 -2.10 16 20 C 0.06 0.93 7.30 -39.35 -0.29 0.64 16 21 F -0.14 -2.18 17.10 2.25 0.04 -2.14 16 22 C 0.09 1.47 6.71 -39.09 -0.26 1.21 16 23 O -0.49 -6.67 13.35 -19.46 -0.26 -6.93 16 24 C -0.16 -2.73 9.95 -39.43 -0.39 -3.12 16 25 C 0.15 2.87 4.81 -39.08 -0.19 2.68 16 26 F -0.11 -2.45 16.32 2.25 0.04 -2.41 16 27 C -0.10 -2.40 5.97 -104.64 -0.62 -3.03 16 28 H 0.27 6.47 8.30 -40.82 -0.34 6.13 16 29 H 0.19 4.86 5.68 -52.48 -0.30 4.56 16 30 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.39 3.63 9.06 45.56 0.41 4.04 16 35 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -29.01 312.69 -7.85 -36.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -1.75 Total: 13.91 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -6.12 Total: -25.09 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.52 Total: -33.03 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.26 Total: -6.93 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.08 Total: -4.55 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.01 -7.85 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211359645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.356 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds