Wall clock time and date at job start Tue Mar 31 2020 11:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86796 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47397 * 300.00456 * 3 2 1 6 6 H 1.48500 * 109.46875 * 60.00388 * 3 2 1 7 7 C 1.38643 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00300 * 0.27304 * 7 2 1 10 10 C 1.35752 * 117.00090 * 174.66432 * 9 7 2 11 11 C 1.38766 * 120.10530 * 5.59201 * 10 9 7 12 12 C 1.38127 * 119.99976 * 180.02562 * 11 10 9 13 13 C 1.38366 * 120.21215 * 0.02562 * 12 11 10 14 14 C 1.38169 * 120.20543 * 0.02562 * 13 12 11 15 15 C 1.38750 * 119.99511 * 359.68069 * 14 13 12 16 16 N 1.40023 * 120.10517 * 180.32311 * 15 14 13 17 17 C 1.37906 * 120.15450 * 269.99649 * 16 15 14 18 18 N 1.32473 * 135.04201 * 0.69167 * 17 16 15 19 19 C 1.32801 * 108.70669 * 179.54153 * 18 17 16 20 20 N 1.31613 * 110.14069 * 359.75526 * 19 18 17 21 21 C 1.34333 * 108.19628 * 0.02562 * 20 19 18 22 22 C 1.40690 * 135.13343 * 180.02562 * 21 20 19 23 23 N 1.37305 * 120.36379 * 359.97093 * 22 21 20 24 24 N 1.33431 * 119.27214 * 179.97438 * 22 21 20 25 25 C 1.31238 * 121.95868 * 0.02562 * 24 22 21 26 26 F 1.35103 * 118.89466 * 179.97438 * 25 24 22 27 27 H 0.97007 * 119.99410 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99766 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.89782 * 179.97438 * 12 11 10 30 30 H 1.08008 * 119.90121 * 179.97438 * 13 12 11 31 31 H 1.08003 * 120.00017 * 179.97438 * 14 13 12 32 32 H 1.07999 * 124.92886 * 179.72467 * 19 18 17 33 33 H 0.96999 * 120.00535 * 180.02562 * 23 22 21 34 34 H 0.97005 * 120.00035 * 0.02677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3682 -0.0066 10 6 2.0700 -3.5038 -0.1193 11 6 3.4561 -3.4398 -0.1050 12 6 4.2021 -4.5966 -0.2203 13 6 3.5718 -5.8215 -0.3508 14 6 2.1921 -5.8950 -0.3671 15 6 1.4344 -4.7391 -0.2458 16 7 0.0361 -4.8117 -0.2552 17 6 -0.6543 -4.7221 -1.4457 18 7 -0.3141 -4.5810 -2.7182 19 6 -1.4189 -4.5642 -3.4550 20 7 -2.4786 -4.6974 -2.6860 21 6 -2.0625 -4.8039 -1.4131 22 6 -2.6959 -4.9632 -0.1670 23 7 -4.0644 -5.0430 -0.0892 24 7 -1.9521 -5.0360 0.9383 25 6 -0.6423 -4.9628 0.9003 26 9 0.0499 -5.0430 2.0578 27 1 -0.4849 0.8402 0.0004 28 1 3.9516 -2.4855 -0.0046 29 1 5.2808 -4.5449 -0.2094 30 1 4.1600 -6.7228 -0.4410 31 1 1.7036 -6.8528 -0.4695 32 1 -1.4440 -4.4563 -4.5293 33 1 -4.4957 -5.1525 0.7727 34 1 -4.6000 -4.9898 -0.8963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:44 Heat of formation + Delta-G solvation = 94.751090 kcal Electronic energy + Delta-G solvation = -26153.886027 eV Core-core repulsion = 22197.845509 eV Total energy + Delta-G solvation = -3956.040518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.51521 -41.98907 -39.71005 -38.70097 -37.14228 -36.21430 -33.49470 -32.52350 -30.34525 -29.92008 -29.18688 -28.46712 -25.65215 -24.43430 -23.43405 -22.45975 -21.87750 -20.27550 -19.17310 -18.49706 -18.30504 -17.80797 -16.99072 -16.63079 -16.37101 -15.62427 -15.24020 -15.08643 -14.83647 -14.55942 -14.32434 -14.10225 -13.92741 -13.62824 -13.31228 -13.07841 -12.88264 -12.01543 -11.89561 -11.64372 -11.40564 -11.10108 -10.95883 -10.73540 -10.56457 -10.09924 -9.83004 -9.66203 -9.06983 -8.89472 -8.57109 -8.48594 -7.61984 -7.55262 -6.66861 -4.27631 0.39743 1.58224 1.74022 1.91353 2.03618 2.89452 3.00965 3.03192 3.09028 3.75016 3.78259 3.82255 4.03539 4.11963 4.35623 4.72398 4.75791 4.91989 5.20879 5.33212 5.45247 5.48900 5.74899 5.78376 5.87906 6.05855 6.31267 6.53238 6.67348 6.74591 6.81918 6.91151 6.99092 7.07308 7.13118 7.38507 7.51802 7.67853 7.71837 7.73697 8.75989 8.87169 9.34034 10.48915 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.006345 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.006406 B = 4411.670307 C = 5433.280807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.045 3.955 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.397 4.397 8 H 0.099 0.901 9 O -0.158 6.158 10 C 0.177 3.823 11 C -0.222 4.222 12 C -0.047 4.047 13 C -0.207 4.207 14 C -0.034 4.034 15 C -0.034 4.034 16 N -0.356 5.356 17 C 0.261 3.739 18 N -0.522 5.522 19 C 0.197 3.803 20 N -0.510 5.510 21 C -0.121 4.121 22 C 0.558 3.442 23 N -0.794 5.794 24 N -0.585 5.585 25 C 0.610 3.390 26 F -0.055 7.055 27 H 0.274 0.726 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.411 0.589 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -9.496 2.389 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.472 4.472 8 H 0.116 0.884 9 O -0.059 6.059 10 C 0.119 3.881 11 C -0.242 4.242 12 C -0.065 4.065 13 C -0.227 4.227 14 C -0.053 4.053 15 C -0.125 4.125 16 N -0.042 5.042 17 C 0.010 3.990 18 N -0.245 5.245 19 C -0.095 4.095 20 N -0.231 5.231 21 C -0.259 4.259 22 C 0.311 3.689 23 N -0.331 5.331 24 N -0.322 5.322 25 C 0.334 3.666 26 F -0.035 7.035 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.213 0.787 33 H 0.242 0.758 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.986 -9.258 2.379 9.763 hybrid contribution 0.703 1.033 0.021 1.250 sum -1.283 -8.225 2.399 8.663 Atomic orbital electron populations 1.70061 1.06137 1.28203 1.43506 1.25402 0.95919 0.99142 0.95775 0.85565 0.79182 0.79725 0.78505 1.18777 1.19838 1.19876 1.21464 0.92057 0.80126 1.53565 0.88373 1.83962 1.34662 1.11673 1.75608 1.19159 0.90638 0.86608 0.91668 1.21103 0.92439 0.99800 1.10821 1.20969 0.99177 0.92026 0.94331 1.20472 0.92998 0.97733 1.11501 1.20587 0.94054 0.95118 0.95552 1.16862 0.78574 0.93273 1.23786 1.40985 1.07151 1.52737 1.03344 1.19424 0.87577 1.05094 0.86902 1.70094 1.32636 1.23515 0.98261 1.24855 0.83217 1.01813 0.99597 1.70454 1.32700 1.21815 0.98105 1.19974 0.91617 1.20425 0.93862 1.17348 0.85188 0.80834 0.85492 1.42084 1.02347 1.74625 1.14038 1.67150 1.01238 1.34720 1.29128 1.17992 0.83553 0.88843 0.76198 1.91823 1.77417 1.91816 1.42396 0.91617 0.84353 0.86326 0.86215 0.86356 0.78699 0.75793 0.73904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.50 13.67 55.48 0.76 -23.75 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 3 Si 0.95 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.40 -10.71 9.49 30.88 0.29 -10.41 16 8 H 0.10 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.16 -4.39 9.50 0.09 0.00 -4.39 16 10 C 0.18 4.16 6.67 -38.92 -0.26 3.90 16 11 C -0.22 -4.48 9.16 -39.43 -0.36 -4.84 16 12 C -0.05 -0.77 10.04 -39.58 -0.40 -1.16 16 13 C -0.21 -3.26 10.04 -39.56 -0.40 -3.66 16 14 C -0.03 -0.60 9.96 -39.42 -0.39 -0.99 16 15 C -0.03 -0.72 4.54 -83.46 -0.38 -1.10 16 16 N -0.36 -7.57 2.44 -61.77 -0.15 -7.72 16 17 C 0.26 5.95 7.69 -155.27 -1.19 4.76 16 18 N -0.52 -12.27 11.32 -13.51 -0.15 -12.42 16 19 C 0.20 4.09 12.89 -91.44 -1.18 2.91 16 20 N -0.51 -10.45 11.38 -12.41 -0.14 -10.59 16 21 C -0.12 -2.49 7.16 -84.76 -0.61 -3.09 16 22 C 0.56 9.54 7.83 -155.17 -1.21 8.32 16 23 N -0.79 -9.30 8.99 31.29 0.28 -9.02 16 24 N -0.58 -10.26 10.39 -13.62 -0.14 -10.40 16 25 C 0.61 11.70 9.06 -89.94 -0.81 10.88 16 26 F -0.06 -0.98 16.63 2.25 0.04 -0.94 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.14 2.73 5.64 -52.48 -0.30 2.44 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.20 3.23 8.06 -52.49 -0.42 2.81 16 33 H 0.41 3.56 8.95 -40.82 -0.37 3.20 16 34 H 0.43 4.45 8.83 -40.82 -0.36 4.09 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -34.24 314.37 -8.91 -43.15 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -2.12 Total: 9.77 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -7.00 Total: 6.61 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: 0.45 Total: -73.90 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.00 Total: -4.39 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.24 -8.91 -43.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.906 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds