Wall clock time and date at job start Tue Mar 31 2020 11:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86796 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47397 * 300.00456 * 3 2 1 6 6 H 1.48500 * 109.46875 * 60.00388 * 3 2 1 7 7 C 1.38643 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00224 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00300 * 0.27304 * 7 2 1 10 10 C 1.35752 * 117.00090 * 174.66432 * 9 7 2 11 11 C 1.38766 * 120.10530 * 5.59201 * 10 9 7 12 12 C 1.38127 * 119.99976 * 180.02562 * 11 10 9 13 13 C 1.38366 * 120.21215 * 0.02562 * 12 11 10 14 14 C 1.38169 * 120.20543 * 0.02562 * 13 12 11 15 15 C 1.38750 * 119.99511 * 359.68069 * 14 13 12 16 16 N 1.40023 * 120.10517 * 180.32311 * 15 14 13 17 17 C 1.37906 * 120.15450 * 269.99649 * 16 15 14 18 18 N 1.32473 * 135.04201 * 0.69167 * 17 16 15 19 19 C 1.32801 * 108.70669 * 179.54153 * 18 17 16 20 20 N 1.31613 * 110.14069 * 359.75526 * 19 18 17 21 21 C 1.34333 * 108.19628 * 0.02562 * 20 19 18 22 22 C 1.40690 * 135.13343 * 180.02562 * 21 20 19 23 23 N 1.37305 * 120.36379 * 359.97093 * 22 21 20 24 24 N 1.33431 * 119.27214 * 179.97438 * 22 21 20 25 25 C 1.31238 * 121.95868 * 0.02562 * 24 22 21 26 26 F 1.35103 * 118.89466 * 179.97438 * 25 24 22 27 27 H 0.97007 * 119.99410 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99766 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.89782 * 179.97438 * 12 11 10 30 30 H 1.08008 * 119.90121 * 179.97438 * 13 12 11 31 31 H 1.08003 * 120.00017 * 179.97438 * 14 13 12 32 32 H 1.07999 * 124.92886 * 179.72467 * 19 18 17 33 33 H 0.96999 * 120.00535 * 180.02562 * 23 22 21 34 34 H 0.97005 * 120.00035 * 0.02677 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3963 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3682 -0.0066 10 6 2.0700 -3.5038 -0.1193 11 6 3.4561 -3.4398 -0.1050 12 6 4.2021 -4.5966 -0.2203 13 6 3.5718 -5.8215 -0.3508 14 6 2.1921 -5.8950 -0.3671 15 6 1.4344 -4.7391 -0.2458 16 7 0.0361 -4.8117 -0.2552 17 6 -0.6543 -4.7221 -1.4457 18 7 -0.3141 -4.5810 -2.7182 19 6 -1.4189 -4.5642 -3.4550 20 7 -2.4786 -4.6974 -2.6860 21 6 -2.0625 -4.8039 -1.4131 22 6 -2.6959 -4.9632 -0.1670 23 7 -4.0644 -5.0430 -0.0892 24 7 -1.9521 -5.0360 0.9383 25 6 -0.6423 -4.9628 0.9003 26 9 0.0499 -5.0430 2.0578 27 1 -0.4849 0.8402 0.0004 28 1 3.9516 -2.4855 -0.0046 29 1 5.2808 -4.5449 -0.2094 30 1 4.1600 -6.7228 -0.4410 31 1 1.7036 -6.8528 -0.4695 32 1 -1.4440 -4.4563 -4.5293 33 1 -4.4957 -5.1525 0.7727 34 1 -4.6000 -4.9898 -0.8963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:44 Heat of formation + Delta-G solvation = 72.062923 kcal Electronic energy + Delta-G solvation = -26154.869860 eV Core-core repulsion = 22197.845509 eV Total energy + Delta-G solvation = -3957.024351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.99608 -43.50641 -41.30113 -40.22920 -38.73183 -37.66468 -34.84410 -34.40328 -31.92454 -31.41278 -30.73967 -29.96499 -27.52503 -25.89925 -24.93704 -23.98660 -23.46441 -21.78695 -20.63771 -20.05908 -19.96959 -19.36578 -18.49952 -18.16293 -17.79563 -17.09957 -16.70348 -16.62859 -16.43635 -16.12033 -15.79207 -15.71773 -15.55435 -15.13531 -14.80592 -14.73722 -14.36407 -13.71503 -13.42341 -13.22764 -12.86226 -12.70246 -12.43145 -12.22908 -12.14407 -11.72960 -11.42442 -11.10960 -10.93079 -10.53497 -10.10491 -10.03874 -9.24740 -9.04197 -8.58118 -6.27993 -1.07951 0.09549 0.23898 0.41913 0.52415 1.30084 1.39019 1.48968 1.50760 2.07516 2.21447 2.43942 2.45932 2.61660 2.84210 2.96486 3.21248 3.30931 3.69676 3.93055 4.02408 4.14651 4.31080 4.35310 4.43770 4.56224 4.84030 4.98018 5.08653 5.30997 5.35446 5.46783 5.55497 5.59369 5.73933 5.84517 5.90377 6.02732 6.13791 6.54993 6.85284 7.28437 7.55288 8.63308 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.006345 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.006406 B = 4411.670307 C = 5433.280807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.019 2.981 4 H -0.243 1.243 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.415 4.415 8 H 0.111 0.889 9 O -0.215 6.215 10 C 0.141 3.859 11 C -0.235 4.235 12 C -0.036 4.036 13 C -0.175 4.175 14 C -0.043 4.043 15 C -0.042 4.042 16 N -0.367 5.367 17 C 0.225 3.775 18 N -0.557 5.557 19 C 0.176 3.824 20 N -0.506 5.506 21 C -0.141 4.141 22 C 0.565 3.435 23 N -0.754 5.754 24 N -0.576 5.576 25 C 0.610 3.390 26 F -0.048 7.048 27 H 0.272 0.728 28 H 0.135 0.865 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.142 0.858 32 H 0.225 0.775 33 H 0.431 0.569 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -11.460 2.869 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.166 1.166 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.129 0.871 9 O -0.120 6.120 10 C 0.087 3.913 11 C -0.255 4.255 12 C -0.054 4.054 13 C -0.194 4.194 14 C -0.062 4.062 15 C -0.133 4.133 16 N -0.055 5.055 17 C -0.024 4.024 18 N -0.282 5.282 19 C -0.116 4.116 20 N -0.227 5.227 21 C -0.279 4.279 22 C 0.314 3.686 23 N -0.291 5.291 24 N -0.315 5.315 25 C 0.334 3.666 26 F -0.027 7.027 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.160 0.840 32 H 0.242 0.758 33 H 0.266 0.734 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.536 -11.293 2.866 11.664 hybrid contribution 0.287 1.225 -0.078 1.261 sum -0.249 -10.068 2.789 10.450 Atomic orbital electron populations 1.70216 1.08228 1.28846 1.47691 1.26652 0.96783 1.02917 0.95342 0.84517 0.78663 0.74555 0.78434 1.16636 1.19933 1.19110 1.21951 0.92833 0.80760 1.53538 0.87137 1.83945 1.36044 1.12632 1.79377 1.19825 0.92242 0.86503 0.92722 1.21328 0.91504 1.01438 1.11233 1.21494 1.01340 0.90695 0.91835 1.21150 0.92366 0.99311 1.06578 1.21048 0.95100 0.94944 0.95077 1.17364 0.79130 0.93688 1.23099 1.41058 1.07333 1.53680 1.03444 1.19677 0.88828 1.06747 0.87135 1.69988 1.34215 1.24717 0.99234 1.25448 0.82767 1.02448 1.00910 1.70406 1.32554 1.21591 0.98141 1.20277 0.91397 1.21403 0.94869 1.17417 0.86873 0.79931 0.84359 1.42099 1.00280 1.70903 1.15853 1.67294 1.00488 1.34942 1.28726 1.18242 0.84092 0.88208 0.76068 1.91831 1.77421 1.91667 1.41827 0.91880 0.84751 0.81677 0.81226 0.84004 0.75828 0.73444 0.72645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.67 21.61 0.30 -55.97 16 2 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 3 Si 1.02 42.37 29.55 68.60 2.03 44.40 16 4 H -0.24 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.42 -23.55 9.49 67.92 0.64 -22.90 16 8 H 0.11 5.61 5.21 -2.91 -0.02 5.60 16 9 O -0.22 -12.65 9.50 -22.59 -0.21 -12.86 16 10 C 0.14 6.78 6.67 22.70 0.15 6.93 16 11 C -0.24 -9.35 9.16 22.37 0.20 -9.15 16 12 C -0.04 -1.04 10.04 22.27 0.22 -0.82 16 13 C -0.18 -4.69 10.04 22.28 0.22 -4.47 16 14 C -0.04 -1.41 9.96 22.38 0.22 -1.19 16 15 C -0.04 -1.80 4.54 38.26 0.17 -1.63 16 16 N -0.37 -15.98 2.44 -349.35 -0.85 -16.84 16 17 C 0.23 10.57 7.69 133.90 1.03 11.60 16 18 N -0.56 -27.08 11.32 -196.64 -2.23 -29.31 16 19 C 0.18 7.46 12.89 180.63 2.33 9.79 16 20 N -0.51 -20.93 11.38 -193.18 -2.20 -23.13 16 21 C -0.14 -5.87 7.16 40.06 0.29 -5.58 16 22 C 0.56 18.95 7.83 133.71 1.05 20.00 16 23 N -0.75 -16.14 8.99 -54.92 -0.49 -16.63 16 24 N -0.58 -20.00 10.39 -197.00 -2.05 -22.04 16 25 C 0.61 23.68 9.06 180.11 1.63 25.31 16 26 F -0.05 -1.72 16.63 44.97 0.75 -0.97 16 27 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.13 5.33 5.64 -2.91 -0.02 5.31 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.23 7.52 8.06 -2.91 -0.02 7.50 16 33 H 0.43 6.26 8.95 -92.71 -0.83 5.43 16 34 H 0.44 8.14 8.83 -92.70 -0.82 7.32 16 Total: -1.00 -81.98 314.37 3.25 -78.73 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.42 Total: 27.27 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 8.63 Total: 27.34 kcal Atomic # 7 Polarization: -156.40 SS G_CDS: -7.52 Total: -163.92 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.21 Total: -12.86 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.75 Total: -0.97 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -81.98 3.25 -78.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.797 kcal (2) G-P(sol) polarization free energy of solvation -81.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds